CF417240
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 3.032e-27 Identity = 47/86 (54.65%), Postives = 59/86 (68.60%), Query Frame = -3 Query: 272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529 P PKV F T+IYHPNI+ G ICLDI + +WSPAL I VLLSI +LL PNPDDPL IA+ +KT+ + ++EWT+ YA Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146 HSP 2 Score: 45.0542 bits (105), Expect = 3.032e-27 Identity = 20/48 (41.67%), Postives = 28/48 (58.33%), Query Frame = -2 Query: 531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674 L +P SA P D+M ++ I+GP SPY+GGVF L + P +Y Sbjct: 13 LARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 3.032e-27 Identity = 47/86 (54.65%), Postives = 59/86 (68.60%), Query Frame = -3 Query: 272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529 P PKV F T+IYHPNI+ G ICLDI + +WSPAL I VLLSI +LL PNPDDPL IA+ +KT+ + ++EWT+ YA Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146 HSP 2 Score: 45.0542 bits (105), Expect = 3.032e-27 Identity = 20/48 (41.67%), Postives = 28/48 (58.33%), Query Frame = -2 Query: 531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674 L +P SA P D+M ++ I+GP SPY+GGVF L + P +Y Sbjct: 13 LARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2D3_HUMAN (Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 3.032e-27 Identity = 47/86 (54.65%), Postives = 59/86 (68.60%), Query Frame = -3 Query: 272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529 P PKV F T+IYHPNI+ G ICLDI + +WSPAL I VLLSI +LL PNPDDPL IA+ +KT+ + ++EWT+ YA Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146 HSP 2 Score: 45.0542 bits (105), Expect = 3.032e-27 Identity = 20/48 (41.67%), Postives = 28/48 (58.33%), Query Frame = -2 Query: 531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674 L +P SA P D+M ++ I+GP SPY+GGVF L + P +Y Sbjct: 13 LARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 3.032e-27 Identity = 47/86 (54.65%), Postives = 59/86 (68.60%), Query Frame = -3 Query: 272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529 P PKV F T+IYHPNI+ G ICLDI + +WSPAL I VLLSI +LL PNPDDPL IA+ +KT+ + ++EWT+ YA Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146 HSP 2 Score: 45.0542 bits (105), Expect = 3.032e-27 Identity = 20/48 (41.67%), Postives = 28/48 (58.33%), Query Frame = -2 Query: 531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674 L +P SA P D+M ++ I+GP SPY+GGVF L + P +Y Sbjct: 13 LARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBE2T_BOVIN (Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN=UBE2T PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 5.086e-27 Identity = 43/90 (47.78%), Postives = 58/90 (64.44%), Query Frame = -3 Query: 272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXK----DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529 P P++RFLT IYHPNID GRICLD+ K W P+L I T+L IQ L++ PNPDDPL +I+ +K N+ + A++WT +A Sbjct: 62 PFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATLLTCIQQLMAEPNPDDPLMADISSEFKYNKPVFFKNARQWTEKHA 151 HSP 2 Score: 49.2914 bits (116), Expect = 5.086e-27 Identity = 23/48 (47.92%), Postives = 28/48 (58.33%), Query Frame = -2 Query: 531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674 L +EP PGI+ D M ILG +PYE GVFKLE+ +PE Y Sbjct: 14 LAAEPPPGITCWQDGDRMEDLRAQILGGANTPYEKGVFKLEVHIPERY 61
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.134e-26 Identity = 47/86 (54.65%), Postives = 57/86 (66.28%), Query Frame = -3 Query: 272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529 P PKV F TKIYHPNI+ G ICLDI + +WSPAL + VLLSI +LL PNPDDPL IA +K + + A+EWT+ YA Sbjct: 61 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLAREWTQKYA 146 HSP 2 Score: 43.5134 bits (101), Expect = 1.134e-26 Identity = 19/48 (39.58%), Postives = 28/48 (58.33%), Query Frame = -2 Query: 531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674 L +P SA P D++ ++ I+GP SPY+GGVF L + P +Y Sbjct: 13 LQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 1.921e-26 Identity = 46/86 (53.49%), Postives = 58/86 (67.44%), Query Frame = -3 Query: 272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529 P PKV F T+IYHPNI+ ICLDI + +WSPAL I VLLSI +LL PNPDDPL IA+ +KT+ + ++EWT+ YA Sbjct: 61 PFKPPKVAFTTRIYHPNINSNDSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146 HSP 2 Score: 45.0542 bits (105), Expect = 1.921e-26 Identity = 20/48 (41.67%), Postives = 28/48 (58.33%), Query Frame = -2 Query: 531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674 L +P SA P D+M ++ I+GP SPY+GGVF L + P +Y Sbjct: 13 LARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2E1_MOUSE (Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus GN=Ube2e1 PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 9.253e-26 Identity = 48/87 (55.17%), Postives = 58/87 (66.67%), Query Frame = -3 Query: 269 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 529 P PKV F T+IYH NI+ G ICLDI KD WSPAL I VLLSI +LL+ NP DPL +IA + TN AE A++WT+ YA+ Sbjct: 107 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 193 HSP 2 Score: 43.5134 bits (101), Expect = 9.253e-26 Identity = 21/45 (46.67%), Postives = 26/45 (57.78%), Query Frame = -2 Query: 531 EPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 665 +P P SA P DN+ + ILGP S YEGGVF L++ EY Sbjct: 62 DPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEY 106
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2E1_HUMAN (Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens GN=UBE2E1 PE=1 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 9.253e-26 Identity = 48/87 (55.17%), Postives = 58/87 (66.67%), Query Frame = -3 Query: 269 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 529 P PKV F T+IYH NI+ G ICLDI KD WSPAL I VLLSI +LL+ NP DPL +IA + TN AE A++WT+ YA+ Sbjct: 107 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 193 HSP 2 Score: 43.5134 bits (101), Expect = 9.253e-26 Identity = 21/45 (46.67%), Postives = 26/45 (57.78%), Query Frame = -2 Query: 531 EPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 665 +P P SA P DN+ + ILGP S YEGGVF L++ EY Sbjct: 62 DPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEY 106
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 9.348e-26 Identity = 46/86 (53.49%), Postives = 61/86 (70.93%), Query Frame = -3 Query: 272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529 P PK+ F TKIYHPNI+ G ICLDI + +WSPAL + VLLSI +LL PNPDDPL +IA+ +K+++ + A+EWT+ YA Sbjct: 61 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYA 146 HSP 2 Score: 39.6614 bits (91), Expect = 9.348e-26 Identity = 18/48 (37.50%), Postives = 27/48 (56.25%), Query Frame = -2 Query: 531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674 L +P SA P D++ ++ I+GP S Y+GGVF L + P +Y Sbjct: 13 LQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 60 The following BLAST results are available for this feature:
BLAST of CF417240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 199
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417240 ID=CF417240; Name=CF417240; organism=Citrus sinensis; type=EST; length=681bpback to top |