CF417240 | Citrus Genome Database

Overview


Name	CF417240
Unique Name	CF417240
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	681

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig4591	contig	Csv1_Contig4591:178..859.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.032e-27
Identity = 47/86 (54.65%), Postives = 59/86 (68.60%), Query Frame = -3

Query:  272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529
            P   PKV F T+IYHPNI+  G ICLDI + +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +    ++EWT+ YA
Sbjct:   61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146

HSP 2 Score: 45.0542 bits (105), Expect = 3.032e-27
Identity = 20/48 (41.67%), Postives = 28/48 (58.33%), Query Frame = -2

Query:  531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674
            L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +Y
Sbjct:   13 LARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60

[Close]

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.032e-27
Identity = 47/86 (54.65%), Postives = 59/86 (68.60%), Query Frame = -3

Query:  272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529
            P   PKV F T+IYHPNI+  G ICLDI + +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +    ++EWT+ YA
Sbjct:   61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146

HSP 2 Score: 45.0542 bits (105), Expect = 3.032e-27
Identity = 20/48 (41.67%), Postives = 28/48 (58.33%), Query Frame = -2

Query:  531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674
            L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +Y
Sbjct:   13 LARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60

[Close]

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2D3_HUMAN (Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.032e-27
Identity = 47/86 (54.65%), Postives = 59/86 (68.60%), Query Frame = -3

Query:  272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529
            P   PKV F T+IYHPNI+  G ICLDI + +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +    ++EWT+ YA
Sbjct:   61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146

HSP 2 Score: 45.0542 bits (105), Expect = 3.032e-27
Identity = 20/48 (41.67%), Postives = 28/48 (58.33%), Query Frame = -2

Query:  531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674
            L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +Y
Sbjct:   13 LARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60

[Close]

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.032e-27
Identity = 47/86 (54.65%), Postives = 59/86 (68.60%), Query Frame = -3

Query:  272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529
            P   PKV F T+IYHPNI+  G ICLDI + +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +    ++EWT+ YA
Sbjct:   61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146

HSP 2 Score: 45.0542 bits (105), Expect = 3.032e-27
Identity = 20/48 (41.67%), Postives = 28/48 (58.33%), Query Frame = -2

Query:  531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674
            L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +Y
Sbjct:   13 LARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60

[Close]

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBE2T_BOVIN (Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN=UBE2T PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.086e-27
Identity = 43/90 (47.78%), Postives = 58/90 (64.44%), Query Frame = -3

Query:  272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXK----DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529
            P   P++RFLT IYHPNID  GRICLD+ K      W P+L I T+L  IQ L++ PNPDDPL  +I+  +K N+    + A++WT  +A
Sbjct:   62 PFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATLLTCIQQLMAEPNPDDPLMADISSEFKYNKPVFFKNARQWTEKHA 151

HSP 2 Score: 49.2914 bits (116), Expect = 5.086e-27
Identity = 23/48 (47.92%), Postives = 28/48 (58.33%), Query Frame = -2

Query:  531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674
            L +EP PGI+     D M      ILG   +PYE GVFKLE+ +PE Y
Sbjct:   14 LAAEPPPGITCWQDGDRMEDLRAQILGGANTPYEKGVFKLEVHIPERY 61

[Close]

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.134e-26
Identity = 47/86 (54.65%), Postives = 57/86 (66.28%), Query Frame = -3

Query:  272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529
            P   PKV F TKIYHPNI+  G ICLDI + +WSPAL +  VLLSI +LL  PNPDDPL   IA  +K +  +    A+EWT+ YA
Sbjct:   61 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLAREWTQKYA 146

HSP 2 Score: 43.5134 bits (101), Expect = 1.134e-26
Identity = 19/48 (39.58%), Postives = 28/48 (58.33%), Query Frame = -2

Query:  531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674
            L  +P    SA P  D++ ++   I+GP  SPY+GGVF L +  P +Y
Sbjct:   13 LQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60

[Close]

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.921e-26
Identity = 46/86 (53.49%), Postives = 58/86 (67.44%), Query Frame = -3

Query:  272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529
            P   PKV F T+IYHPNI+    ICLDI + +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +    ++EWT+ YA
Sbjct:   61 PFKPPKVAFTTRIYHPNINSNDSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146

HSP 2 Score: 45.0542 bits (105), Expect = 1.921e-26
Identity = 20/48 (41.67%), Postives = 28/48 (58.33%), Query Frame = -2

Query:  531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674
            L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +Y
Sbjct:   13 LARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60

[Close]

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2E1_MOUSE (Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus GN=Ube2e1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.253e-26
Identity = 48/87 (55.17%), Postives = 58/87 (66.67%), Query Frame = -3

Query:  269 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 529
            P   PKV F T+IYH NI+  G ICLDI KD WSPAL I  VLLSI +LL+  NP DPL  +IA  + TN AE    A++WT+ YA+
Sbjct:  107 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 193

HSP 2 Score: 43.5134 bits (101), Expect = 9.253e-26
Identity = 21/45 (46.67%), Postives = 26/45 (57.78%), Query Frame = -2

Query:  531 EPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 665
            +P P  SA P  DN+  +   ILGP  S YEGGVF L++    EY
Sbjct:   62 DPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEY 106

[Close]

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2E1_HUMAN (Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens GN=UBE2E1 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.253e-26
Identity = 48/87 (55.17%), Postives = 58/87 (66.67%), Query Frame = -3

Query:  269 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 529
            P   PKV F T+IYH NI+  G ICLDI KD WSPAL I  VLLSI +LL+  NP DPL  +IA  + TN AE    A++WT+ YA+
Sbjct:  107 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 193

HSP 2 Score: 43.5134 bits (101), Expect = 9.253e-26
Identity = 21/45 (46.67%), Postives = 26/45 (57.78%), Query Frame = -2

Query:  531 EPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 665
            +P P  SA P  DN+  +   ILGP  S YEGGVF L++    EY
Sbjct:   62 DPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEY 106

[Close]

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.348e-26
Identity = 46/86 (53.49%), Postives = 61/86 (70.93%), Query Frame = -3

Query:  272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529
            P   PK+ F TKIYHPNI+  G ICLDI + +WSPAL +  VLLSI +LL  PNPDDPL  +IA+ +K+++ +    A+EWT+ YA
Sbjct:   61 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYA 146

HSP 2 Score: 39.6614 bits (91), Expect = 9.348e-26
Identity = 18/48 (37.50%), Postives = 27/48 (56.25%), Query Frame = -2

Query:  531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674
            L  +P    SA P  D++ ++   I+GP  S Y+GGVF L +  P +Y
Sbjct:   13 LQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 60

The following BLAST results are available for this feature:

BLAST of CF417240 vs. ExPASy Swiss-Prot

BLAST of CF417240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199


Match Name	E-value	Identity	Description
UB2D3_MOUSE	3.032e-27	54.65	Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus...	[more]
UB2D3_MACFA	3.032e-27	54.65	Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fasci...	[more]
UB2D3_HUMAN	3.032e-27	54.65	Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens...	[more]
UB2D2_PIG	3.032e-27	54.65	Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G...	[more]
UBE2T_BOVIN	5.086e-27	47.78	Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN...	[more]
UB2D4_HUMAN	1.134e-26	54.65	Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens...	[more]
UB2D3_BOVIN	1.921e-26	53.49	Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G...	[more]
UB2E1_MOUSE	9.253e-26	55.17	Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus...	[more]
UB2E1_HUMAN	9.253e-26	55.17	Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens...	[more]
UB2D1_MOUSE	9.348e-26	53.49	Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-170 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_A07 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417240 ID=CF417240; Name=CF417240; organism=Citrus sinensis; type=EST; length=681bp
GTTTTTTTTTTTTTTTTTTTTTGCTTCGAAATTTAAGAGTTGAGAAACAA
TGTATATCATCTAATCATACAAGTTCAAAGACATGGCTTCCACAAGAAGA
AAATAATTGACATGTGCGGTAAGATGGAAGCTTTCAGAATGTCAAACTCC
GAATGTTCAAACATCAATTCAATTCTTCCAAATTTTCCATTTTAAACACA
GTGAATAGCATACATTGCACAATTGTTATTTGAATGAAGTGATATTTTCC
ACCATGTCATCAAGCACCACTGGCATATAAACGTGTCCATTCCTTCGCTG
TTTCAACCGCTTCGGCCTCATTTGTTTTCCAGTGTTTGGCAATGTTCTCA
GAGAGAGGATCATCGGGGTTAGGAGCACTCAGAAGTGCTTGAATGCTCAA
AAGTACAGTCCGAATCTGGAGAGCTGGACTCCACTTGTCTTTCANAATAT
CAAGACAAATCCTTCCAAGCTTATCAATGTTAGGATGATATATCTTGGTA
AGAAATCGGACCTTTGGAGCAGCCATTGGNATATTCTTCAGGCAAAAATA
ATTCCAATTTGAACACCCCTCCTTCATATGGAGATTGTGTTGGACCAAGG
ATCATCACATTAAAGTATCGCATATTATCTTCCGAGGGAGATGCACTTAT
TCCTGGTGCTGGTTCACTGAGGAGACGCTGT