CF417240 | Citrus Genome Database

Overview


Name	CF417240
Unique Name	CF417240
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	681

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig4591	contig	Csv1_Contig4591:178..859.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.348e-26
Identity = 46/86 (53.49%), Postives = 61/86 (70.93%), Query Frame = -3

Query:  272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529
            P   PK+ F TKIYHPNI+  G ICLDI + +WSPAL +  VLLSI +LL  PNPDDPL  +IA+ +K+++ +    A+EWT+ YA
Sbjct:   61 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYA 146

HSP 2 Score: 39.6614 bits (91), Expect = 9.348e-26
Identity = 18/48 (37.50%), Postives = 27/48 (56.25%), Query Frame = -2

Query:  531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674
            L  +P    SA P  D++ ++   I+GP  S Y+GGVF L +  P +Y
Sbjct:   13 LQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 60

[Close]

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.348e-26
Identity = 46/86 (53.49%), Postives = 61/86 (70.93%), Query Frame = -3

Query:  272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529
            P   PK+ F TKIYHPNI+  G ICLDI + +WSPAL +  VLLSI +LL  PNPDDPL  +IA+ +K+++ +    A+EWT+ YA
Sbjct:   61 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYA 146

HSP 2 Score: 39.6614 bits (91), Expect = 9.348e-26
Identity = 18/48 (37.50%), Postives = 27/48 (56.25%), Query Frame = -2

Query:  531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674
            L  +P    SA P  D++ ++   I+GP  S Y+GGVF L +  P +Y
Sbjct:   13 LQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 60

[Close]

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2E3_MOUSE (Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 2.036e-25
Identity = 48/87 (55.17%), Postives = 58/87 (66.67%), Query Frame = -3

Query:  269 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 529
            P   PKV F T+IYH NI+  G ICLDI KD WSPAL I  VLLSI +LL+  NP DPL  +IA  + TN AE    A++WT+ YA+
Sbjct:  121 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYAT 207

HSP 2 Score: 42.743 bits (99), Expect = 2.036e-25
Identity = 20/45 (44.44%), Postives = 26/45 (57.78%), Query Frame = -2

Query:  531 EPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 665
            +P P  SA P  DN+  +   ILGP  S YEGGVF L++    +Y
Sbjct:   76 DPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDY 120

[Close]

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.036e-25
Identity = 48/87 (55.17%), Postives = 58/87 (66.67%), Query Frame = -3

Query:  269 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 529
            P   PKV F T+IYH NI+  G ICLDI KD WSPAL I  VLLSI +LL+  NP DPL  +IA  + TN AE    A++WT+ YA+
Sbjct:  121 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYAT 207

HSP 2 Score: 42.743 bits (99), Expect = 2.036e-25
Identity = 20/45 (44.44%), Postives = 26/45 (57.78%), Query Frame = -2

Query:  531 EPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 665
            +P P  SA P  DN+  +   ILGP  S YEGGVF L++    +Y
Sbjct:   76 DPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDY 120

[Close]

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.036e-25
Identity = 48/87 (55.17%), Postives = 58/87 (66.67%), Query Frame = -3

Query:  269 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 529
            P   PKV F T+IYH NI+  G ICLDI KD WSPAL I  VLLSI +LL+  NP DPL  +IA  + TN AE    A++WT+ YA+
Sbjct:  121 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYAT 207

HSP 2 Score: 42.743 bits (99), Expect = 2.036e-25
Identity = 20/45 (44.44%), Postives = 26/45 (57.78%), Query Frame = -2

Query:  531 EPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 665
            +P P  SA P  DN+  +   ILGP  S YEGGVF L++    +Y
Sbjct:   76 DPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDY 120

[Close]

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2E2_MOUSE (Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus GN=Ube2e2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.038e-25
Identity = 48/87 (55.17%), Postives = 58/87 (66.67%), Query Frame = -3

Query:  269 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 529
            P   PKV F T+IYH NI+  G ICLDI KD WSPAL I  VLLSI +LL+  NP DPL  +IA  + TN AE    A++WT+ YA+
Sbjct:  115 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 201

HSP 2 Score: 42.3578 bits (98), Expect = 2.038e-25
Identity = 20/45 (44.44%), Postives = 26/45 (57.78%), Query Frame = -2

Query:  531 EPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 665
            +P P  SA P  DN+  +   ILGP  S YEGGVF L++    +Y
Sbjct:   70 DPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDY 114

[Close]

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2E2_HUMAN (Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens GN=UBE2E2 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.038e-25
Identity = 48/87 (55.17%), Postives = 58/87 (66.67%), Query Frame = -3

Query:  269 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 529
            P   PKV F T+IYH NI+  G ICLDI KD WSPAL I  VLLSI +LL+  NP DPL  +IA  + TN AE    A++WT+ YA+
Sbjct:  115 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 201

HSP 2 Score: 42.3578 bits (98), Expect = 2.038e-25
Identity = 20/45 (44.44%), Postives = 26/45 (57.78%), Query Frame = -2

Query:  531 EPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 665
            +P P  SA P  DN+  +   ILGP  S YEGGVF L++    +Y
Sbjct:   70 DPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDY 114

[Close]

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC27_ARATH (Ubiquitin carrier protein E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.622e-25
Identity = 45/87 (51.72%), Postives = 59/87 (67.82%), Query Frame = -3

Query:  272 PMAAPKVRFLTKIYHPNID-KLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529
            P   PK++F TK++HPNI  + G ICLDI KD+WSPAL ++T L+SIQALLSAP P DP    +A+ +  N    V TA+ WT  +A
Sbjct:   63 PFEPPKMQFSTKVWHPNISSQSGAICLDILKDQWSPALTLKTALVSIQALLSAPEPKDPQDAVVAEQYMKNYQVFVSTARYWTETFA 149

HSP 2 Score: 40.817 bits (94), Expect = 7.622e-25
Identity = 16/46 (34.78%), Postives = 27/46 (58.70%), Query Frame = -2

Query:  531 SEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 668
            ++ + GI   P  DN+      I GP  +PYEGG F++++ +P+ Y
Sbjct:   17 NQDSSGIRVCPKSDNLTRLTGTIPGPIGTPYEGGTFQIDITMPDGY 62

[Close]

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.702e-25
Identity = 47/88 (53.41%), Postives = 61/88 (69.32%), Query Frame = -3

Query:  266 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 529
            P   PKV F TK+YHPNID  G ICLDI K++WSPA     VLLSI +LL+ PNP+DPL   IA  +K ++++   TA++WT+ YA G
Sbjct:   62 PFKPPKVNFKTKVYHPNIDSKGSICLDILKEQWSPAPTTSKVLLSICSLLTDPNPNDPLVPEIAHLYKVDKSKYESTAQKWTQKYAMG 149

HSP 2 Score: 35.4242 bits (80), Expect = 7.702e-25
Identity = 16/45 (35.56%), Postives = 26/45 (57.78%), Query Frame = -2

Query:  531 PAPGISASP-SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 662
            P    SA P +E+++ ++   I+GP  SPY GGVF + +    +Y
Sbjct:   17 PPANCSAGPVAEEDIFHWQATIMGPHDSPYSGGVFTVSIDFSSDY 61

[Close]

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBCD2_DROME (Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophila melanogaster GN=UbcD2 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.057e-23
Identity = 46/87 (52.87%), Postives = 55/87 (63.22%), Query Frame = -3

Query:  269 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 529
            P   PKV F T+IYH NI+  G ICLDI KD WSPAL I  VLLSI +LL+  NP DPL  +IA  +  N  E    A+ WT+ YA+
Sbjct:  146 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLQNREEHDRIARLWTKRYAT 232

HSP 2 Score: 43.1282 bits (100), Expect = 1.057e-23
Identity = 21/45 (46.67%), Postives = 26/45 (57.78%), Query Frame = -2

Query:  531 EPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 665
            +P P  SA P  DN+  +   ILGP  S YEGGVF L++    EY
Sbjct:  101 DPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEY 145

The following BLAST results are available for this feature:

BLAST of CF417240 vs. ExPASy Swiss-Prot

BLAST of CF417240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199


Match Name	E-value	Identity	Description
UB2D1_HUMAN	9.348e-26	53.49	Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens...	[more]
UB2D1_BOVIN	9.348e-26	53.49	Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G...	[more]
UB2E3_MOUSE	2.036e-25	55.17	Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus...	[more]
UB2E3_HUMAN	2.036e-25	55.17	Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens...	[more]
UB2E3_BOVIN	2.036e-25	55.17	Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G...	[more]
UB2E2_MOUSE	2.038e-25	55.17	Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus...	[more]
UB2E2_HUMAN	2.038e-25	55.17	Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens...	[more]
UBC27_ARATH	7.622e-25	51.72	Ubiquitin carrier protein E2 27 OS=Arabidopsis tha...	[more]
UBC12_ARATH	7.702e-25	53.41	Probable ubiquitin-conjugating enzyme E2 12 OS=Ara...	[more]
UBCD2_DROME	1.057e-23	52.87	Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophi...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_115000-170 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_A07 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417240 ID=CF417240; Name=CF417240; organism=Citrus sinensis; type=EST; length=681bp
GTTTTTTTTTTTTTTTTTTTTTGCTTCGAAATTTAAGAGTTGAGAAACAA
TGTATATCATCTAATCATACAAGTTCAAAGACATGGCTTCCACAAGAAGA
AAATAATTGACATGTGCGGTAAGATGGAAGCTTTCAGAATGTCAAACTCC
GAATGTTCAAACATCAATTCAATTCTTCCAAATTTTCCATTTTAAACACA
GTGAATAGCATACATTGCACAATTGTTATTTGAATGAAGTGATATTTTCC
ACCATGTCATCAAGCACCACTGGCATATAAACGTGTCCATTCCTTCGCTG
TTTCAACCGCTTCGGCCTCATTTGTTTTCCAGTGTTTGGCAATGTTCTCA
GAGAGAGGATCATCGGGGTTAGGAGCACTCAGAAGTGCTTGAATGCTCAA
AAGTACAGTCCGAATCTGGAGAGCTGGACTCCACTTGTCTTTCANAATAT
CAAGACAAATCCTTCCAAGCTTATCAATGTTAGGATGATATATCTTGGTA
AGAAATCGGACCTTTGGAGCAGCCATTGGNATATTCTTCAGGCAAAAATA
ATTCCAATTTGAACACCCCTCCTTCATATGGAGATTGTGTTGGACCAAGG
ATCATCACATTAAAGTATCGCATATTATCTTCCGAGGGAGATGCACTTAT
TCCTGGTGCTGGTTCACTGAGGAGACGCTGT