CF417240 | Citrus Genome Database

Overview


Name	CF417240
Unique Name	CF417240
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	681

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig4591	contig	Csv1_Contig4591:178..859.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.780e-23
Identity = 32/73 (43.84%), Postives = 49/73 (67.12%), Query Frame = -3

Query:  311 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAE 529
            P   P VRFL+K++HPN+   G ICLDI +++WSP   + ++L SIQ+LL  PNP+ P +   A+ ++ N+ E
Sbjct:   64 PNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKRE 136

HSP 2 Score: 53.1434 bits (126), Expect = 6.780e-23
Identity = 23/52 (44.23%), Postives = 34/52 (65.38%), Query Frame = -2

Query:  525 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYXN 680
            +RL  +P  G+S +PSE+N+  +N +I GP  +P+E G FKL +   EEY N
Sbjct:   14 KRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPN 65

[Close]

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.780e-23
Identity = 32/73 (43.84%), Postives = 49/73 (67.12%), Query Frame = -3

Query:  311 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAE 529
            P   P VRFL+K++HPN+   G ICLDI +++WSP   + ++L SIQ+LL  PNP+ P +   A+ ++ N+ E
Sbjct:   64 PNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKRE 136

HSP 2 Score: 53.1434 bits (126), Expect = 6.780e-23
Identity = 23/52 (44.23%), Postives = 34/52 (65.38%), Query Frame = -2

Query:  525 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYXN 680
            +RL  +P  G+S +PSE+N+  +N +I GP  +P+E G FKL +   EEY N
Sbjct:   14 KRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPN 65

[Close]

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.823e-23
Identity = 31/73 (42.47%), Postives = 49/73 (67.12%), Query Frame = -3

Query:  311 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAE 529
            P   P VRF++K++HPN+   G ICLDI +++WSP   + ++L SIQ+LL  PNP+ P +   A+ ++ N+ E
Sbjct:   64 PNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKRE 136

HSP 2 Score: 53.9138 bits (128), Expect = 8.823e-23
Identity = 23/52 (44.23%), Postives = 34/52 (65.38%), Query Frame = -2

Query:  525 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYXN 680
            +RL  +P  G+S +PSE+N+  +N +I GP  +P+E G FKL +   EEY N
Sbjct:   14 KRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPN 65

[Close]

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 8.823e-23
Identity = 31/73 (42.47%), Postives = 49/73 (67.12%), Query Frame = -3

Query:  311 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAE 529
            P   P VRF++K++HPN+   G ICLDI +++WSP   + ++L SIQ+LL  PNP+ P +   A+ ++ N+ E
Sbjct:   64 PNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKRE 136

HSP 2 Score: 53.9138 bits (128), Expect = 8.823e-23
Identity = 23/52 (44.23%), Postives = 34/52 (65.38%), Query Frame = -2

Query:  525 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYXN 680
            +RL  +P  G+S +PSE+N+  +N +I GP  +P+E G FKL +   EEY N
Sbjct:   14 KRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPN 65

[Close]

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.148e-22
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = -3

Query:  311 KNXPMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAE 538
            ++ P   P VRF+++++HPNI   G ICLDI +++WSP   +  VL SIQ+LL  PNPD P +   A+ +  N+ E
Sbjct:   61 EDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKRE 136

HSP 2 Score: 55.0694 bits (131), Expect = 1.148e-22
Identity = 22/52 (42.31%), Postives = 35/52 (67.31%), Query Frame = -2

Query:  525 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYXN 680
            +RL  +P  GIS +P ++N+ ++N +I GP  +P++GG FKL L   E+Y N
Sbjct:   14 KRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPN 65

[Close]

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC2_CANGA (Ubiquitin-conjugating enzyme E2 2 OS=Candida glabrata GN=UBC2 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.487e-22
Identity = 29/83 (34.94%), Postives = 54/83 (65.06%), Query Frame = -3

Query:  290 KNXPMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKE 538
            ++ P   P V+FL++++HPN+   G ICLDI +++W+P   + ++L SIQ+L + PNP  P +   A  +K ++++ ++  KE
Sbjct:   61 EDYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYIKRVKE 143

HSP 2 Score: 55.8398 bits (133), Expect = 1.487e-22
Identity = 24/52 (46.15%), Postives = 34/52 (65.38%), Query Frame = -2

Query:  525 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYXN 680
            +R+  +  PG+SASP  DN+  +N MI+GP  +PYE G F+L L   E+Y N
Sbjct:   14 KRMKEDSPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEDYPN 65

[Close]

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.937e-22
Identity = 29/80 (36.25%), Postives = 52/80 (65.00%), Query Frame = -3

Query:  290 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKE 529
            P   P V+FL++++HPN+   G ICLDI +++W+P   + ++L SIQ+L + PNP  P +   A  ++ ++++ V+  KE
Sbjct:   64 PNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQDHKSQYVKRVKE 143

HSP 2 Score: 56.9954 bits (136), Expect = 1.937e-22
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = -2

Query:  525 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYXN 680
            +R+  +  PG+SASP  DN+  +N MI+GP  +PYE G F+L L   EEY N
Sbjct:   14 KRMKEDSPPGVSASPLPDNVMIWNAMIIGPADTPYEDGTFRLLLEFDEEYPN 65

[Close]

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.508e-22
Identity = 32/82 (39.02%), Postives = 50/82 (60.98%), Query Frame = -3

Query:  293 KNXPMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAK 538
            ++ P   P V+FL+K++HPN+   G +CLDI +++WSP   +  +L SIQ+LL  PNP+ P +   A  ++ N  E V   K
Sbjct:   61 ESYPNKPPTVKFLSKMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLHDPNPNSPANAEAASLYRENMKEYVRRVK 142

HSP 2 Score: 52.373 bits (124), Expect = 2.508e-22
Identity = 23/52 (44.23%), Postives = 32/52 (61.54%), Query Frame = -2

Query:  525 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYXN 680
            +RL ++P  GIS +P  DN+  +N +I GP  +P+E G FKL L   E Y N
Sbjct:   14 KRLSTDPPGGISGAPCADNLMIWNAVIFGPADTPFEDGTFKLVLTFDESYPN 65

[Close]

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.283e-22
Identity = 35/80 (43.75%), Postives = 51/80 (63.75%), Query Frame = -3

Query:  290 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKE 529
            P  AP V+FL+K++HPN+   G ICLDI +++WSP   I  +L SIQ+LL  PNP+ P +   A+ ++ N+ E     KE
Sbjct:   64 PNDAPTVKFLSKMFHPNVYADGSICLDILQNQWSPIYDIAAILTSIQSLLCDPNPNSPANSESARLFRENKREYNRKVKE 143

HSP 2 Score: 50.0618 bits (118), Expect = 4.283e-22
Identity = 24/52 (46.15%), Postives = 32/52 (61.54%), Query Frame = -2

Query:  525 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYXN 680
            +RL S+P  GIS +P E+N+  +  +I GP  S +EG  FKL L   EEY N
Sbjct:   14 KRLQSDPPAGISGAPLENNILMWQAVIFGPDDSIWEGATFKLSLQFSEEYPN 65

[Close]

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.572e-22
Identity = 32/83 (38.55%), Postives = 51/83 (61.45%), Query Frame = -3

Query:  290 KNXPMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKE 538
            ++ P   P VRF+++++HPNI   G ICLDI +++WSP   +  +L SIQ+LL  PNP+ P +   A+ +  N+ E     +E
Sbjct:   61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRKVRE 143

HSP 2 Score: 52.7582 bits (125), Expect = 5.572e-22
Identity = 22/52 (42.31%), Postives = 34/52 (65.38%), Query Frame = -2

Query:  525 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYXN 680
            +RL  +P  GIS +P ++N+  +N +I GP  +P++GG FKL L   E+Y N
Sbjct:   14 KRLQQDPPAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPN 65

The following BLAST results are available for this feature:

BLAST of CF417240 vs. ExPASy Swiss-Prot

BLAST of CF417240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199


Match Name	E-value	Identity	Description
UBE2B_HUMAN	6.780e-23	43.84	Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ...	[more]
UBE2B_BOVIN	6.780e-23	43.84	Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN...	[more]
UBE2A_MOUSE	8.823e-23	42.47	Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ...	[more]
UBE2A_HUMAN	8.823e-23	42.47	Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ...	[more]
UBC3_ARATH	1.148e-22	43.42	Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t...	[more]
UBC2_CANGA	1.487e-22	34.94	Ubiquitin-conjugating enzyme E2 2 OS=Candida glabr...	[more]
UBC2_KLULA	1.937e-22	36.25	Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces...	[more]
UBC2_USTMA	2.508e-22	39.02	Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd...	[more]
UBC2_DICDI	4.283e-22	43.75	Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium...	[more]
UBC2_WHEAT	5.572e-22	38.55	Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_115000-170 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_A07 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417240 ID=CF417240; Name=CF417240; organism=Citrus sinensis; type=EST; length=681bp
GTTTTTTTTTTTTTTTTTTTTTGCTTCGAAATTTAAGAGTTGAGAAACAA
TGTATATCATCTAATCATACAAGTTCAAAGACATGGCTTCCACAAGAAGA
AAATAATTGACATGTGCGGTAAGATGGAAGCTTTCAGAATGTCAAACTCC
GAATGTTCAAACATCAATTCAATTCTTCCAAATTTTCCATTTTAAACACA
GTGAATAGCATACATTGCACAATTGTTATTTGAATGAAGTGATATTTTCC
ACCATGTCATCAAGCACCACTGGCATATAAACGTGTCCATTCCTTCGCTG
TTTCAACCGCTTCGGCCTCATTTGTTTTCCAGTGTTTGGCAATGTTCTCA
GAGAGAGGATCATCGGGGTTAGGAGCACTCAGAAGTGCTTGAATGCTCAA
AAGTACAGTCCGAATCTGGAGAGCTGGACTCCACTTGTCTTTCANAATAT
CAAGACAAATCCTTCCAAGCTTATCAATGTTAGGATGATATATCTTGGTA
AGAAATCGGACCTTTGGAGCAGCCATTGGNATATTCTTCAGGCAAAAATA
ATTCCAATTTGAACACCCCTCCTTCATATGGAGATTGTGTTGGACCAAGG
ATCATCACATTAAAGTATCGCATATTATCTTCCGAGGGAGATGCACTTAT
TCCTGGTGCTGGTTCACTGAGGAGACGCTGT