CF417240

Overview
NameCF417240
Unique NameCF417240
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.572e-22
Identity = 32/83 (38.55%), Postives = 51/83 (61.45%), Query Frame = -3
Query:  290 KNXPMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKE 538
            ++ P   P VRF+++++HPNI   G ICLDI +++WSP   +  +L SIQ+LL  PNP+ P +   A+ +  N+ E     +E
Sbjct:   61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 143          

HSP 2 Score: 53.1434 bits (126), Expect = 5.572e-22
Identity = 22/52 (42.31%), Postives = 34/52 (65.38%), Query Frame = -2
Query:  525 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYXN 680
            +RL  +P  GIS +P ++N+  +N +I GP  +P++GG FKL L   E+Y N
Sbjct:   14 KRLQHDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPN 65          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.336e-22
Identity = 30/73 (41.10%), Postives = 47/73 (64.38%), Query Frame = -3
Query:  311 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAE 529
            P   P V+F++K++HPN+   G ICLDI +++WSP   +  +L SIQ+LL  PNP+ P +   A+ ++ N  E
Sbjct:   64 PNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRRE 136          

HSP 2 Score: 53.1434 bits (126), Expect = 9.336e-22
Identity = 22/52 (42.31%), Postives = 34/52 (65.38%), Query Frame = -2
Query:  525 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYXN 680
            ++L  +P  G+S +P+EDN+  +  +I GP ++P+E G FKL L   EEY N
Sbjct:   14 KKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPN 65          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.424e-22
Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = -3
Query:  269 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 529
            P   PK  F T IYHPNI+  G IC++I KDKW+PAL +  VLLSI  LL  PNPDDPL   I + +K N  +  + A+E+T  +A+
Sbjct:   67 PFKPPKFTFKTPIYHPNINDEGSICMNILKDKWTPALMVEKVLLSILLLLEKPNPDDPLVPEIGQLFKNNRFQFDQRAREFTARHAN 153          

HSP 2 Score: 34.6538 bits (78), Expect = 9.424e-22
Identity = 14/39 (35.90%), Postives = 23/39 (58.97%), Query Frame = -2
Query:  531 SASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 647
            S   + +N+  +  +I GP  +PYEGG+F L +  P +Y
Sbjct:   28 SIGQNSNNIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDY 66          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.597e-21
Identity = 31/83 (37.35%), Postives = 51/83 (61.45%), Query Frame = -3
Query:  290 KNXPMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKE 538
            ++ P   P VRF+++++HPNI   G ICLDI +++WSP   +  +L SIQ+LL  PNP+ P +   A+ +  ++ E     +E
Sbjct:   61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREYNRRVRE 143          

HSP 2 Score: 53.5286 bits (127), Expect = 1.597e-21
Identity = 22/52 (42.31%), Postives = 34/52 (65.38%), Query Frame = -2
Query:  525 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYXN 680
            +RL  +P  GIS +P ++N+  +N +I GP  +P++GG FKL L   E+Y N
Sbjct:   14 KRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPN 65          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.597e-21
Identity = 30/76 (39.47%), Postives = 49/76 (64.47%), Query Frame = -3
Query:  311 KNXPMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAE 538
            ++ P   P VRF+++++HPNI   G ICLDI +++WSP   +  +L SIQ+LL  PNP+ P +   A+ +  ++ E
Sbjct:   61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKRE 136          

HSP 2 Score: 53.5286 bits (127), Expect = 1.597e-21
Identity = 22/52 (42.31%), Postives = 34/52 (65.38%), Query Frame = -2
Query:  525 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYXN 680
            +RL  +P  GIS +P ++N+  +N +I GP  +P++GG FKL L   E+Y N
Sbjct:   14 KRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPN 65          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBE2T_XENLA (Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.231e-21
Identity = 53/103 (51.46%), Postives = 61/103 (59.22%), Query Frame = -3
Query:  272 GCSNWNYFCLKNXPMAAPKVRFLTKIYHPNIDKLGRICLDIXK----DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 568
            G  N      +  P   PK+RFLT IYHPNID  GRICLDI K      W PAL I TVL SIQ L+S PNPDDPL  +I+  +K N A     AK+WT  +A
Sbjct:   49 GIFNLEIIVPERYPFEPPKIRFLTPIYHPNIDSAGRICLDILKLPPKGAWRPALNISTVLTSIQLLMSEPNPDDPLMADISSEFKYNRAVFFSNAKKWTEKHA 151          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.703e-21
Identity = 29/80 (36.25%), Postives = 50/80 (62.50%), Query Frame = -3
Query:  290 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKE 529
            P   P+V+F+++++HPN+   G +CLDI +++WSP   +  VL SIQ+LL+ PN   P +   +  +K N  E ++  +E
Sbjct:   64 PNKPPQVKFISQMFHPNVYANGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRREYIKRVRE 143          

HSP 2 Score: 52.373 bits (124), Expect = 2.703e-21
Identity = 21/52 (40.38%), Postives = 35/52 (67.31%), Query Frame = -2
Query:  525 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYXN 680
            +R+ ++P  G+SASP  DN+  +N +I+GP  +P+E G F+L +   E+Y N
Sbjct:   14 KRMQTDPPAGVSASPIPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPN 65          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.703e-21
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = -3
Query:  290 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKE 529
            P   P V+F+++++HPN+   G +CLDI +++WSP   +  +L SIQ+LL+ PN   P +   +  +K N  E ++  +E
Sbjct:   64 PNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYKDNRKEYIKRVRE 143          

HSP 2 Score: 53.1434 bits (126), Expect = 2.703e-21
Identity = 21/52 (40.38%), Postives = 35/52 (67.31%), Query Frame = -2
Query:  525 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYXN 680
            +R+ ++P  G+SASP  DN+  +N +I+GP  +P+E G F+L +   E+Y N
Sbjct:   14 KRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPN 65          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC2_CRYNE (Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus neoformans GN=UBC2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.497e-21
Identity = 33/84 (39.29%), Postives = 51/84 (60.71%), Query Frame = -3
Query:  278 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRL 529
            P   P VRF++K++HPNI   G +CLDI +++WSP   +  +L S+Q+LL+ PNP  P + + A+ +K N  E     K+   L
Sbjct:   64 PNKPPTVRFISKMFHPNIYANGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNPASPANVDAAQLFKENLKEYERRVKKTVEL 147          

HSP 2 Score: 49.2914 bits (116), Expect = 3.497e-21
Identity = 22/52 (42.31%), Postives = 33/52 (63.46%), Query Frame = -2
Query:  525 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYXN 680
            +RL S+   GIS SP+ DN+  +N +I GP ++P+E G F+L L   + Y N
Sbjct:   14 KRLTSDAPIGISGSPNPDNIMVWNAVIFGPPETPFEDGSFRLTLTFTDAYPN 65          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.517e-21
Identity = 29/80 (36.25%), Postives = 49/80 (61.25%), Query Frame = -3
Query:  290 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKE 529
            P   P+V+F+++++HPN+   G +CLDI +++WSP   +  VL SIQ+LL+ PN   P +   +  +K N  E  +  +E
Sbjct:   64 PNKPPQVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRKEYTKRVRE 143          

HSP 2 Score: 52.373 bits (124), Expect = 3.517e-21
Identity = 21/52 (40.38%), Postives = 35/52 (67.31%), Query Frame = -2
Query:  525 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYXN 680
            +R+ ++P  G+SASP  DN+  +N +I+GP  +P+E G F+L +   E+Y N
Sbjct:   14 KRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPN 65          
The following BLAST results are available for this feature:
BLAST of CF417240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
UBC2_MEDSA5.572e-2238.55Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC1_CAEEL9.336e-2241.10Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBC31_ARATH9.424e-2249.43Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
UBC2_ARATH1.597e-2137.35Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBC1_ARATH1.597e-2139.47Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBE2T_XENLA2.231e-2151.46Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevi... [more]
UBC2_TRIHA2.703e-2136.25Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC2_ASPFU2.703e-2135.00Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBC2_CRYNE3.497e-2139.29Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus ... [more]
UBC2_NECHA3.517e-2136.25Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-170 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417240 ID=CF417240; Name=CF417240; organism=Citrus sinensis; type=EST; length=681bp
GTTTTTTTTTTTTTTTTTTTTTGCTTCGAAATTTAAGAGTTGAGAAACAA
TGTATATCATCTAATCATACAAGTTCAAAGACATGGCTTCCACAAGAAGA
AAATAATTGACATGTGCGGTAAGATGGAAGCTTTCAGAATGTCAAACTCC
GAATGTTCAAACATCAATTCAATTCTTCCAAATTTTCCATTTTAAACACA
GTGAATAGCATACATTGCACAATTGTTATTTGAATGAAGTGATATTTTCC
ACCATGTCATCAAGCACCACTGGCATATAAACGTGTCCATTCCTTCGCTG
TTTCAACCGCTTCGGCCTCATTTGTTTTCCAGTGTTTGGCAATGTTCTCA
GAGAGAGGATCATCGGGGTTAGGAGCACTCAGAAGTGCTTGAATGCTCAA
AAGTACAGTCCGAATCTGGAGAGCTGGACTCCACTTGTCTTTCANAATAT
CAAGACAAATCCTTCCAAGCTTATCAATGTTAGGATGATATATCTTGGTA
AGAAATCGGACCTTTGGAGCAGCCATTGGNATATTCTTCAGGCAAAAATA
ATTCCAATTTGAACACCCCTCCTTCATATGGAGATTGTGTTGGACCAAGG
ATCATCACATTAAAGTATCGCATATTATCTTCCGAGGGAGATGCACTTAT
TCCTGGTGCTGGTTCACTGAGGAGACGCTGT
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