CF417248

Overview
NameCF417248
Unique NameCF417248
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EFTU_BDEBA (Elongation factor Tu OS=Bdellovibrio bacteriovorus GN=tuf PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.226e-14
Identity = 41/116 (35.34%), Postives = 60/116 (51.72%), Query Frame = 1
Query:   64 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS 411
            + K H+NI  IGHVD GK+T T  +   L    K     +++               +DK   E+ RGITI     ++ET   +   +D PGH D++KNMITG +Q D A+L++ S
Sbjct:    8 RNKPHVNIGTIGHVDHGKTTLTAAITTTLAASGKAQAMAYDQ---------------IDKSPEEKARGITISTTHVEYETDNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSS 108          
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EFTU_ANAPZ (Elongation factor Tu OS=Anaplasma phagocytophilum (strain HZ) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.226e-14
Identity = 48/118 (40.68%), Postives = 63/118 (53.39%), Query Frame = 1
Query:   70 KTHINIVVIGHVDSGKSTTTGHLIY----KLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS 411
            K HIN+  IGHVD GK+T T  L      KL G +K V                KY  + DK   E+ RGITI  A  ++ET   +   +D PGH D+IKNMITG +Q D A+L++ +
Sbjct:    6 KPHINVGTIGHVDHGKTTLTAALTTVLARKLSGANKVV----------------KYDEI-DKAPEEKARGITISTAHVEYETEGRHYAHVDCPGHADYIKNMITGAAQMDVAILVVSA 106          
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EFTU_ANAMM (Elongation factor Tu OS=Anaplasma marginale (strain St. Maries) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.226e-14
Identity = 48/118 (40.68%), Postives = 63/118 (53.39%), Query Frame = 1
Query:   70 KTHINIVVIGHVDSGKSTTTGHLIY----KLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS 411
            K HIN+  IGHVD GK+T T  L      +L G +K V                KY  + DK   ER RGITI  A  ++ET   +   +D PGH D+IKNMITG +Q D A+L++ +
Sbjct:    6 KPHINVGTIGHVDHGKTTLTAALTTVLTRRLSGANKVV----------------KYDEI-DKAPEERARGITISTAHVEYETEGRHYAHVDCPGHADYIKNMITGAAQMDVAILVVSA 106          
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EFTU_AERHH (Elongation factor Tu OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.226e-14
Identity = 41/114 (35.96%), Postives = 63/114 (55.26%), Query Frame = 1
Query:   64 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLII 405
            + K H+N+  IGHVD GK+T T  +   L              A     ++F +  + DK   ERERGITI+ +  +++T   +   +D PGH D++KNMITG +Q D A+L++
Sbjct:    8 RNKPHVNVGTIGHVDHGKTTLTAAITNVL--------------AKHFGGKAFAFDQI-DKAPEERERGITINTSHVEYDTATRHYAHVDCPGHADYVKNMITGAAQMDGAILVV 106          
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EFTU2_ROSS1 (Elongation factor Tu 2 OS=Roseiflexus sp. (strain RS-1) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.226e-14
Identity = 43/117 (36.75%), Postives = 60/117 (51.28%), Query Frame = 1
Query:   64 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSP 414
            + K H+N+  IGHVD GK+T T  +                K  A      F     +D    ER RGITI I   +++T R +   +D PGH D+IKNMITG +Q D A+L++ +P
Sbjct:    8 RTKPHVNVGTIGHVDHGKTTLTAAIT---------------KVLALQGAAQFVSYDQIDNAPEERARGITIAIRHVEYQTARRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSAP 109          
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EFTU1_STRCO (Elongation factor Tu-1 OS=Streptomyces coelicolor GN=tuf1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.226e-14
Identity = 43/114 (37.72%), Postives = 64/114 (56.14%), Query Frame = 1
Query:   64 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLII 405
            + K H+NI  IGH+D GK+T T  +   L      +      EA+  ++        +DK   ER+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++
Sbjct:    8 RTKPHVNIGTIGHIDHGKTTLTAAITKVLHDAYPDI-----NEASAFDQ--------IDKAPEERQRGITISIAHVEYQTEARHYAHVDCPGHADYIKNMITGAAQMDGAILVV 108          
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EFTU1_STRAW (Elongation factor Tu 1 OS=Streptomyces avermitilis GN=tuf1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.226e-14
Identity = 48/117 (41.03%), Postives = 69/117 (58.97%), Query Frame = 1
Query:   64 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFE--KEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET-TRYYCTVIDAPGHRDFIKNMITGTSQADCAVLII 405
            + K H+NI  IGH+D GK+T T         I K + + +    EA+  ++        +DK   ER+RGITI IA  +++T TR+Y  V D PGH D+IKNMITG +Q D A+L++
Sbjct:    8 RTKPHVNIGTIGHIDHGKTTLTA-------AITKVLHDAYPDLNEASAFDQ--------IDKAPEERQRGITISIAHVEYQTETRHYAHV-DCPGHADYIKNMITGAAQMDGAILVV 108          
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EFTU1_SHEB9 (Elongation factor Tu 1 OS=Shewanella baltica (strain OS195) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.226e-14
Identity = 45/115 (39.13%), Postives = 68/115 (59.13%), Query Frame = 1
Query:   70 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET-TRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS 411
            K H+N+  IGHVD GK+T T  + + L        + +  EA + ++        +D    ERERGITI+ +  +++T TR+Y  V D PGH D++KNMITG +Q D A+L++ S
Sbjct:   10 KPHVNVGTIGHVDHGKTTLTAAISHVLA-------KTYGGEAKDFSQ--------IDNAPEERERGITINTSHIEYDTPTRHYAHV-DCPGHADYVKNMITGAAQMDGAILVVAS 108          
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EFTU1_ROSS1 (Elongation factor Tu 1 OS=Roseiflexus sp. (strain RS-1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.226e-14
Identity = 43/117 (36.75%), Postives = 60/117 (51.28%), Query Frame = 1
Query:   64 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSP 414
            + K H+N+  IGHVD GK+T T  +                K  A      F     +D    ER RGITI I   +++T R +   +D PGH D+IKNMITG +Q D A+L++ +P
Sbjct:    8 RTKPHVNVGTIGHVDHGKTTLTAAIT---------------KVLALQGAAQFVSYDQIDNAPEERARGITIAIRHVEYQTARRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSAP 109          
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: CYSN_METEP (Sulfate adenylyltransferase subunit 1 OS=Methylobacterium extorquens (strain PA1) GN=cysN PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.226e-14
Identity = 42/118 (35.59%), Postives = 66/118 (55.93%), Query Frame = 1
Query:   64 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKY--AWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS 411
            + K  +  +  G VD GKST  G L++    I    +   ++++ +   +  +   A ++D L+AERE+GITID+A   F T R    V D PGH  + +NM TG S AD AV+++D+
Sbjct:   20 QNKEVLRFITCGSVDDGKSTLIGRLLHDTKQIFDDQVTALQRDSRKHGTQGGEVDLALLVDGLQAEREQGITIDVAYRFFSTDRRSFIVADTPGHEQYTRNMATGASTADLAVILVDA 137          
The following BLAST results are available for this feature:
BLAST of CF417248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_BDEBA3.226e-1435.34Elongation factor Tu OS=Bdellovibrio bacteriovorus... [more]
EFTU_ANAPZ3.226e-1440.68Elongation factor Tu OS=Anaplasma phagocytophilum ... [more]
EFTU_ANAMM3.226e-1440.68Elongation factor Tu OS=Anaplasma marginale (strai... [more]
EFTU_AERHH3.226e-1435.96Elongation factor Tu OS=Aeromonas hydrophila subsp... [more]
EFTU2_ROSS13.226e-1436.75Elongation factor Tu 2 OS=Roseiflexus sp. (strain ... [more]
EFTU1_STRCO3.226e-1437.72Elongation factor Tu-1 OS=Streptomyces coelicolor ... [more]
EFTU1_STRAW3.226e-1441.03Elongation factor Tu 1 OS=Streptomyces avermitilis... [more]
EFTU1_SHEB93.226e-1439.13Elongation factor Tu 1 OS=Shewanella baltica (stra... [more]
EFTU1_ROSS13.226e-1436.75Elongation factor Tu 1 OS=Roseiflexus sp. (strain ... [more]
CYSN_METEP3.226e-1435.59Sulfate adenylyltransferase subunit 1 OS=Methyloba... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-178 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417248 ID=CF417248; Name=CF417248; organism=Citrus sinensis; type=EST; length=419bp
GCGAGAGAGAAACCTTTTAGCAAATTTCATATCAAGGTTTTATACTAGAT
TTGCATAATGGGTAAGGAGAAGACTCACATCAACATTGTGGTCATCGGCC
ATGTCGACTCTGGAAAGTCGACCACCACCGGACACTTGATCTACAAGCTT
GGTGGTATTGACAAGCGTGTGATCGAGAGGTTTGAGAAGGAAGCTGCTGA
GATGAACAAGAGGTCATTCAAATACGCCTGGGTGCTCGACAAGCTCAAGG
CTGAGCGTGAACGTGGTATTACCATTGATATTGCCTTGTGGAAGTTCGAG
ACCACCAGGTACTACTGCACCGTCATTGATGCTCCTGGACATCGTGACTT
TATCAAGAACATGATTACCGGTACCTCACAGGCTGACTGTGCCGTCCTCA
TCATTGACTCCCCCCCCGG
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