CF417248

Overview
NameCF417248
Unique NameCF417248
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EF1A_YARLI (Elongation factor 1-alpha OS=Yarrowia lipolytica GN=TEF PE=2 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 2.209e-55
Identity = 101/116 (87.07%), Postives = 109/116 (93.97%), Query Frame = 1
Query:   58 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLII 405
            MGKEKTH+N+VVIGHVD+GKSTTTGHLIYK GGIDKR IE+FEKEA E+ K SFKYAWVLDKLKAERERGITIDIALWKF+T +YY TVIDAPGHRDFIKNMITGTSQADCA+LII
Sbjct:    1 MGKEKTHVNLVVIGHVDAGKSTTTGHLIYKCGGIDKRTIEKFEKEADELGKGSFKYAWVLDKLKAERERGITIDIALWKFQTPKYYVTVIDAPGHRDFIKNMITGTSQADCAILII 116          
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EF1AC_PORPU (Elongation factor 1-alpha C OS=Porphyra purpurea GN=TEF-C PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 2.209e-55
Identity = 103/120 (85.83%), Postives = 110/120 (91.67%), Query Frame = 1
Query:   58 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSPP 417
            MGKEK H++IVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVLDKLKAERERGITIDIALWKFET +Y  T+IDAPGHRDFIKNMITGTSQAD A+L+I SPP
Sbjct:    1 MGKEKQHVSIVVIGHVDSGKSTTTGHLIYKCGGIDKRAIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETDKYNFTIIDAPGHRDFIKNMITGTSQADLAILVIASPP 120          
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EF1A_AURPU (Elongation factor 1-alpha OS=Aureobasidium pullulans GN=TEF1 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 2.884e-55
Identity = 102/116 (87.93%), Postives = 109/116 (93.97%), Query Frame = 1
Query:   58 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLII 405
            MGKEK+HIN+VVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAE+ K SFKYAWVLDKLK+ERERGITIDIALWKFET +Y  TVIDAPGHRDFIKNMITGTSQADCA+LII
Sbjct:    1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKSERERGITIDIALWKFETPKYMVTVIDAPGHRDFIKNMITGTSQADCAILII 116          
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EF1A_TRIRE (Elongation factor 1-alpha OS=Trichoderma reesei GN=tef1 PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 3.767e-55
Identity = 104/117 (88.89%), Postives = 110/117 (94.02%), Query Frame = 1
Query:   58 MGKE-KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLII 405
            MGKE KTHIN+VVIGHVDSGKSTTTGHLIY+ GGIDKR IE+FEKEAAE+ K SFKYAWVLDKLKAERERGITIDIALWKFET +YY TVIDAPGHRDFIKNMITGTSQADCA+LII
Sbjct:    1 MGKEDKTHINVVVIGHVDSGKSTTTGHLIYQCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYVTVIDAPGHRDFIKNMITGTSQADCAILII 117          
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EF1A_SORMA (Elongation factor 1-alpha OS=Sordaria macrospora GN=TEF PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 4.920e-55
Identity = 104/117 (88.89%), Postives = 109/117 (93.16%), Query Frame = 1
Query:   58 MGKE-KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLII 405
            MGKE K HIN+VVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAE+ K SFKYAWVLDKLKAERERGITIDIALWKFET +YY TVIDAPGHRDFIKNMITGTSQADCA+LII
Sbjct:    1 MGKEDKAHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYVTVIDAPGHRDFIKNMITGTSQADCAILII 117          
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EF1A_PORYE (Elongation factor 1-alpha OS=Porphyra yezoensis PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 6.426e-55
Identity = 102/120 (85.00%), Postives = 110/120 (91.67%), Query Frame = 1
Query:   58 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSPP 417
            MGKEK H++IVVIGHVDSGKSTTTGHLIYK GGI+KR IE+FEKEAAEM K SFKYAWVLDKLKAERERGITIDIALWKFET +Y  T+IDAPGHRDFIKNMITGTSQAD A+L+I SPP
Sbjct:    1 MGKEKQHVSIVVIGHVDSGKSTTTGHLIYKCGGIEKRAIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETEKYSFTIIDAPGHRDFIKNMITGTSQADLAILVIASPP 120          
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EF1A_CRYNE (Elongation factor 1-alpha OS=Cryptococcus neoformans GN=TEF1 PE=2 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 8.392e-55
Identity = 101/116 (87.07%), Postives = 107/116 (92.24%), Query Frame = 1
Query:   58 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLII 405
            MGK+K H+N+VVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA E+ K SFKYAWVLDKLKAERERGITIDIALWKFET RY  TVIDAPGHRDFIKNMITGTSQADCA+LII
Sbjct:    1 MGKDKLHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQELGKSSFKYAWVLDKLKAERERGITIDIALWKFETPRYQVTVIDAPGHRDFIKNMITGTSQADCAILII 116          
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EF1A1_SCHPO (Elongation factor 1-alpha-A OS=Schizosaccharomyces pombe GN=tef1a PE=1 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 8.392e-55
Identity = 103/116 (88.79%), Postives = 107/116 (92.24%), Query Frame = 1
Query:   58 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLII 405
            MGKEK HIN+VVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA E+ K SFKYAWVLDKLKAERERGITIDIALWKFET +Y  TVIDAPGHRDFIKNMITGTSQADCAVLII
Sbjct:    1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLII 116          
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EF1A_SCHCO (Elongation factor 1-alpha OS=Schizophyllum commune GN=TEF1 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 1.096e-54
Identity = 101/116 (87.07%), Postives = 107/116 (92.24%), Query Frame = 1
Query:   58 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLII 405
            MGKEK H+N+VVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAE+ K SFKYAWVLDKLKAERERGITIDIALWKFET +Y  TVIDAPGHRDFIKNMITGTSQADCA+L I
Sbjct:    1 MGKEKLHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYMVTVIDAPGHRDFIKNMITGTSQADCAILTI 116          
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EF1A_PLAFK (Elongation factor 1-alpha OS=Plasmodium falciparum (isolate K1 / Thailand) GN=MEF-1 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 1.096e-54
Identity = 100/116 (86.21%), Postives = 110/116 (94.83%), Query Frame = 1
Query:   58 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLII 405
            MGKEKTHIN+VVIGHVDSGKSTTTGH+IYKLGGID+R IE+FEKE+AEM K SFKYAWVLDKLKAERERGITIDIALWKFET RY+ TVIDAPGH+DFIKNMITGTSQAD A+L++
Sbjct:    1 MGKEKTHINLVVIGHVDSGKSTTTGHIIYKLGGIDRRTIEKFEKESAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPRYFFTVIDAPGHKDFIKNMITGTSQADVALLVV 116          
The following BLAST results are available for this feature:
BLAST of CF417248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_YARLI2.209e-5587.07Elongation factor 1-alpha OS=Yarrowia lipolytica G... [more]
EF1AC_PORPU2.209e-5585.83Elongation factor 1-alpha C OS=Porphyra purpurea G... [more]
EF1A_AURPU2.884e-5587.93Elongation factor 1-alpha OS=Aureobasidium pullula... [more]
EF1A_TRIRE3.767e-5588.89Elongation factor 1-alpha OS=Trichoderma reesei GN... [more]
EF1A_SORMA4.920e-5588.89Elongation factor 1-alpha OS=Sordaria macrospora G... [more]
EF1A_PORYE6.426e-5585.00Elongation factor 1-alpha OS=Porphyra yezoensis PE... [more]
EF1A_CRYNE8.392e-5587.07Elongation factor 1-alpha OS=Cryptococcus neoforma... [more]
EF1A1_SCHPO8.392e-5588.79Elongation factor 1-alpha-A OS=Schizosaccharomyces... [more]
EF1A_SCHCO1.096e-5487.07Elongation factor 1-alpha OS=Schizophyllum commune... [more]
EF1A_PLAFK1.096e-5486.21Elongation factor 1-alpha OS=Plasmodium falciparum... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-178 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417248 ID=CF417248; Name=CF417248; organism=Citrus sinensis; type=EST; length=419bp
GCGAGAGAGAAACCTTTTAGCAAATTTCATATCAAGGTTTTATACTAGAT
TTGCATAATGGGTAAGGAGAAGACTCACATCAACATTGTGGTCATCGGCC
ATGTCGACTCTGGAAAGTCGACCACCACCGGACACTTGATCTACAAGCTT
GGTGGTATTGACAAGCGTGTGATCGAGAGGTTTGAGAAGGAAGCTGCTGA
GATGAACAAGAGGTCATTCAAATACGCCTGGGTGCTCGACAAGCTCAAGG
CTGAGCGTGAACGTGGTATTACCATTGATATTGCCTTGTGGAAGTTCGAG
ACCACCAGGTACTACTGCACCGTCATTGATGCTCCTGGACATCGTGACTT
TATCAAGAACATGATTACCGGTACCTCACAGGCTGACTGTGCCGTCCTCA
TCATTGACTCCCCCCCCGG
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