CF417256

Overview
NameCF417256
Unique NameCF417256
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417256 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.481e-14
Identity = 56/159 (35.22%), Postives = 72/159 (45.28%), Query Frame = 3
Query:  234 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLA 644
            P +L+G  PGDYG+D  GL  DP      R  E+IHGRWAM   +G     V Q W G+      WF+AG+            +P  +   S  ++LG Q+LLMG VE  R                       N  +  GE    YPGG++FDPL LA
Sbjct:   67 PSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFR----------------------INGLDGVGEGNDLYPGGQYFDPLGLA 203          
BLAST of CF417256 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.481e-14
Identity = 60/161 (37.27%), Postives = 80/161 (49.69%), Query Frame = 3
Query:  234 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEA---GADPGAIA-----PFSFGSL---LGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDLR 683
            P +LDGS PGD+GFD LGLG+ PA L+ Y+E+ELIH RWAM AV GI V +A     W +A    A PG  A     P  +G+L   L  + L + +VE +R                       +    + ++ YPGG  FDPL   G  KD     +L+
Sbjct:   56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR-----------------------SMEKDSEKKKYPGGA-FDPL---GYSKDPAKFEELK 189          
BLAST of CF417256 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.910e-12
Identity = 51/151 (33.77%), Postives = 77/151 (50.99%), Query Frame = 3
Query:  240 WLDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGI----FVGQAW-----SGIPWFEAGADPGAIAPFSFG----SLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPL 635
            +LDG LPGD+GFDPLGL  DP     F+  KW    E+I+GR+AM    G      +G+A      + + WF+ G  P A   +++     +L   ++ LMG+ E +R+ D+  P S   ++        E     +G+  YPGG  F+PL
Sbjct:   65 YLDGRLPGDFGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPA-GTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFL----GLEKGLGGSGDPAYPGGPLFNPL 209          
BLAST of CF417256 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.494e-12
Identity = 53/159 (33.33%), Postives = 70/159 (44.03%), Query Frame = 3
Query:  234 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLA 644
            P +L+G  PGDYG+D  GL  DP      R  E+IHGRWAM   +G     V + W  +      WF+AG+            +P  +   S  ++LG Q++LMG VE  R                       N     GE    YPGG++FDPL LA
Sbjct:   64 PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR----------------------INGLPGVGEGNDLYPGGQYFDPLGLA 200          
BLAST of CF417256 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.479e-12
Identity = 43/129 (33.33%), Postives = 59/129 (45.74%), Query Frame = 3
Query:  180 PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI--------FVGQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKR 506
            P +  W+    G  +   P +L G  PGDYG+D  GL  DP   K YRE E+IH RWA+   +GI        + G  +    WF+AGA             P  I   +  + L  Q++LMG +E  R
Sbjct:   42 PDRAKWL----GPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYR 166          
BLAST of CF417256 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 53/157 (33.76%), Postives = 69/157 (43.95%), Query Frame = 3
Query:  234 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI--------FVGQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLA 644
            PE+L G  PGDYG+D  GL  DP     YRE ELIH RWA+   +GI        + G  +    WF+AGA            +   I   S  + L  Q++LMG  E+ R                  +  +E F +   +  YPGG  FDPL LA
Sbjct:   51 PEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR-----------------ANGGSEGFLDDL-DTLYPGGP-FDPLGLA 188          
The following BLAST results are available for this feature:
BLAST of CF417256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
CB23_HORVU3.481e-1435.22Chlorophyll a-b binding protein of LHCII type III,... [more]
CB11_SOLLC3.481e-1437.27Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB13_SOLLC1.910e-1233.77Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_SOLLC2.494e-1233.33Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_CHLMO9.479e-1233.33Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNTE4.704e-1133.76Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-186 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417256 ID=CF417256; Name=CF417256; organism=Citrus sinensis; type=EST; length=683bp
GCCCATTCTGCAGCTACAGAAGTCAAGTAGAGATCATATCTATGGCGGCT
GCAACATCCGGGGCTGTGTTAAACGGATTGGGTTCTTCATTCATAAATGG
TGGCAAGAAGAGCCAGGCTCTTTTGGCTGGCACGAATAGAGTGACAAGTT
CTAAAAAGTCAGTTGTTGTAGCTGCTCTTCCACCTAAAAAATCTTGGATT
CCTGCTGTTAAAGGTGGTGGCAACCTCATTAATCCCGAATGGCTCGATGG
CTCTCTCCCAGGTGACTACGGATTCGACCCACTTGGGCTTGGAAAGGACC
CAGCATTCCTGAAATGGTACAGAGAAGCAGAACTGATCCACGGACGATGG
GCAATGGCTGCAGTTGTTGGGATATTCGTCGGACAGGCGTGGAGTGGGAT
TCCATGGTTCGAGGCTGGAGCAGATCCTGGAGCCATAGCACCCTTCTCCT
TCGGCTCACTCCTGGGAACCCAGCTTCTCCTTATGGGTTGGGTTGAGAGC
AAGCGGTGGGTTGATTTTTTCAATCCTGAATCTCAATCAGTTGAATGGGC
AACACCTTGGTCAAGAACTGCTGAAAACTTTGCCAATGCGACTGGTGAAC
AAGGCTACCCTGGTGGAAAGTTTTTTGATCCCTTATGTTTGGCTGGAACA
ATTAAGGATGGTGTCTACATTCCTGACCTGAGA
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