CF417257

Overview
NameCF417257
Unique NameCF417257
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417257 vs. ExPASy Swiss-Prot
Match: PLD_MICLT (Pyridoxal 4-dehydrogenase OS=Microbacterium luteolum GN=pld1 PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 5.444e-13
Identity = 49/155 (31.61%), Postives = 72/155 (46.45%), Query Frame = 3
Query:   36 LRKLELRPLGNTGLRLSCVGFGASPLGNVFGAVSENDAVASVREAFRLGINFFDTSPYYGGTLSEKMLGKALKAAGVPRNEYIVSTKCGR-----------------------------YVDGFDFSAERVTRSIDESLARLQLDYVDILQCHDI 413
            L+  E R LG TGL ++ +G G +PLG ++  VS  DA A +   +  GI +FD++P YG    E +LG  L+         ++STK GR                             + + FD+S + V RS D+S  RL    +D+L  HDI
Sbjct:    3 LKASEKRALGRTGLTVTALGLGTAPLGGLYAPVSRADADALLEAGWDSGIRYFDSAPMYGYGRCEHLLGDMLRE---KPERAVISTKVGRLMTNERAGRTLPPAPPKNPLDSGWHNGLNFREVFDYSYDGVMRSFDDSQQRLGFPEIDLLYVHDI 154          
BLAST of CF417257 vs. ExPASy Swiss-Prot
Match: YI7E_SCHPO (Putative aryl-alcohol dehydrogenase C977.14c OS=Schizosaccharomyces pombe GN=SPAC977.14c PE=1 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 9.374e-13
Identity = 45/177 (25.42%), Postives = 81/177 (45.76%), Query Frame = 3
Query:   60 LGNTGLRLS-----CVGFGASPLGNVFGAVSENDAVASVREAFRLGINFFDTSPYYGGTLSEKMLGKALKAAGVPRNEYIVSTKC----------------GRYVDGFD---------FSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIG 500
            LGN+GL++S     C+ +G       +    E +    ++ A+  GI  FDT+  Y   +SE+++GK ++   +PR+  ++ +KC                 R V   D          S + +  ++++S+ RL   Y+D+LQ H  +         E + AL    E+GK+R+IG
Sbjct:   12 LGNSGLKVSKLILGCMSYGKKEYWEDWVLEDEEEVFKIMKAAYDAGIRTFDTANCYSAGVSEELVGKFIRKYEIPRSSIVILSKCFFPVRKDLIKIFGDLSSRGVHFLDSPELANQCGLSRKHIFDAVEDSVKRLGT-YIDVLQIHRYD---PHVSAEEVMRALNDVVESGKVRYIG 184          

HSP 2 Score: 32.7278 bits (73), Expect = 9.374e-13
Identity = 14/25 (56.00%), Postives = 19/25 (76.00%), Query Frame = 1
Query:  616 DLLPYLKSKGVGVISASPLAMGLLT 690
            +++PY +  GVG+I  SPLA GLLT
Sbjct:  225 EMIPYCQKTGVGLIPWSPLARGLLT 249          
BLAST of CF417257 vs. ExPASy Swiss-Prot
Match: IN22_MAIZE (IN2-2 protein OS=Zea mays GN=IN2-2 PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 4.515e-12
Identity = 51/166 (30.72%), Postives = 80/166 (48.19%), Query Frame = 3
Query:   24 MAFPLRKLELRPLGNTGLRLSCVGFGASPLGNVFGAVS-ENDAVASVREAFRLGINFFDTSPYYGGTLSEKMLGKALKAAGVPRNEYIVSTKCG-RYVDG---FDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGIT 506
            MA  L  +    LG+ GL +S  G G   +   +G    E++ +  +  A   G+ F DTS  YG   +E +LGKAL+  G  R +  ++TK G  + DG          V  + + S  RL +D +D+   H I+       +  TI  L+K  E GKI++IG++
Sbjct:    1 MAAALVSVPRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESEMIKLIHHAVDAGVTFLDTSDVYGPHTNEVLLGKALQ--GGVREKVELATKFGVSFADGKREIHGDPAYVRTACEGSFKRLGVDCIDLYYQHRID---KRVPIEVTIGELKKLVEEGKIKYIGLS 161          

HSP 2 Score: 27.7202 bits (60), Expect = 4.515e-12
Identity = 9/26 (34.62%), Postives = 17/26 (65.38%), Query Frame = 1
Query:  613 EDLLPYLKSKGVGVISASPLAMGLLT 690
            ED++P  +  G+G+++ SPL  G  +
Sbjct:  193 EDIIPTCRELGIGIVAYSPLGRGFFS 218          
BLAST of CF417257 vs. ExPASy Swiss-Prot
Match: KCAB3_RAT (Voltage-gated potassium channel subunit beta-3 OS=Rattus norvegicus GN=Kcnab3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 43/122 (35.25%), Postives = 68/122 (55.74%), Query Frame = 3
Query:   45 LELRPLGNTGLRLSCVGFGASPLGNVFGA-VSENDAVASVREAFRLGINFFDTSPYYGGTLSEKMLGKALKAAGVPRNEYIVSTKC---GRYVDGFDFSAERVTRSIDESLARLQLDYVDIL 398
            ++ R LG +GLR+SC+G G       FG+ +S+  A   +  A+  G+N FDT+  Y    +E+ LG  LK+ G  R+ Y+++TK    G+       S + +   +  SL RLQL+YVDI+
Sbjct:   78 MKYRNLGKSGLRVSCLGLGTWV---TFGSQISDETAEDLLTVAYEHGVNLFDTAEVYAAGKAERTLGNILKSKGWRRSSYVITTKIFWGGQAETERGLSRKHIIEGLQGSLDRLQLEYVDIV 196          
BLAST of CF417257 vs. ExPASy Swiss-Prot
Match: KCAB3_XENLA (Voltage-gated potassium channel subunit beta-3 OS=Xenopus laevis GN=kcnab3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 48/137 (35.04%), Postives = 76/137 (55.47%), Query Frame = 3
Query:   45 LELRPLGNTGLRLSCVGFGASPLGNVFGA-VSENDAVASVREAFRLGINFFDTSPYYGGTLSEKMLGKALKAAGVPRNEYIVSTKC---GRYVDGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGS-LDQIV 440
            ++ R LG +GLR+SC+G G       FG+ +S+  A   +  A+  G+N FDT+  Y    +E+ LGK LK     R+ Y+V+TK    G+       S + +   +  SL RLQLDYVDI+  + ++  S +++IV
Sbjct:   71 MKYRNLGKSGLRVSCLGLGTWV---TFGSQISDEVAENLMTVAYEHGVNLFDTAEVYAAGRAERTLGKILKKKEWRRSSYVVTTKIYWGGQAETERGLSRKHIIEGLRGSLERLQLDYVDIVFANRMDPNSPMEEIV 204          
BLAST of CF417257 vs. ExPASy Swiss-Prot
Match: YRPG_BACSU (Uncharacterized oxidoreductase yrpG OS=Bacillus subtilis GN=yrpG PE=3 SV=2)

HSP 1 Score: 60.8474 bits (146), Expect = 1.663e-11
Identity = 49/164 (29.88%), Postives = 77/164 (46.95%), Query Frame = 3
Query:   45 LELRPLGNTGLRLSCVGFGASPLGNVFGAVSENDAVASVREAFRLGINFFDTSPYYG----GTLSEKMLGKALKAAGVPRNEYIVSTKCGRYV--------DGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIG 500
            +E   LG TGLR+S +  G    G       E  A   + EA   GI FFDT+  YG      L+E ++GK     G  R + +++TK    +        D    S  ++ R ++ SL RLQ D++++ Q H I+  +     +E   A + Q  +GK+ +IG
Sbjct:    1 MEYTYLGRTGLRVSRLCLGTMNFGV---DTDEKTAFRIMDEALDNGIQFFDTANIYGWGKNAGLTESIIGKWFAQGGQRREKVVLATKVYEPISDPNDGPNDMRGLSLYKIRRHLEGSLKRLQTDHIELYQMHHIDRRT---PWDEIWEAFETQVRSGKVDYIG 158          

HSP 2 Score: 27.335 bits (59), Expect = 1.663e-11
Identity = 12/24 (50.00%), Postives = 18/24 (75.00%), Query Frame = 1
Query:  616 DLLPYLKSKGVGVISASPLAMGLL 687
            ++LP  +  G+GV++ SPLA GLL
Sbjct:  199 EVLPAARDLGLGVVAWSPLAGGLL 222          
BLAST of CF417257 vs. ExPASy Swiss-Prot
Match: KCAB3_HUMAN (Voltage-gated potassium channel subunit beta-3 OS=Homo sapiens GN=KCNAB3 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.751e-11
Identity = 43/122 (35.25%), Postives = 67/122 (54.92%), Query Frame = 3
Query:   45 LELRPLGNTGLRLSCVGFGASPLGNVFGA-VSENDAVASVREAFRLGINFFDTSPYYGGTLSEKMLGKALKAAGVPRNEYIVSTKC---GRYVDGFDFSAERVTRSIDESLARLQLDYVDIL 398
            ++ R LG +GLR+SC+G G       FG+ +S+  A   +  A+  G+N FDT+  Y    +E+ LG  LK+ G  R+ Y+++TK    G+       S + +   +  SL RLQL YVDI+
Sbjct:   78 MKYRNLGKSGLRVSCLGLGTWV---TFGSQISDETAEDVLTVAYEHGVNLFDTAEVYAAGKAERTLGNILKSKGWRRSSYVITTKIFWGGQAETERGLSRKHIIEGLRGSLERLQLGYVDIV 196          
BLAST of CF417257 vs. ExPASy Swiss-Prot
Match: KCAB_ORYSJ (Probable voltage-gated potassium channel subunit beta OS=Oryza sativa subsp. japonica GN=KOB1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 39/125 (31.20%), Postives = 69/125 (55.20%), Query Frame = 3
Query:   45 LELRPLGNTGLRLSCVGFGA-SPLGNVFGAVSENDAVASVREAFRLGINFFDTSPYYGGTLSEKMLGKALKAAGVPRNEYIVSTKC---GRYVDGFDFSAERVTRSIDESLARLQLDYVDILQCH 407
            ++ + LG +GLR+S + +GA    GN          + + R+A   G+NFFD +  Y    +E+++G+A++  G  R++ +VSTK    G+  +    S + +   +  SL RL +DYVD++ CH
Sbjct:    1 MQYKNLGRSGLRVSQLSYGAWVTFGNQLDVKEAKALLQACRDA---GVNFFDNAEVYANGRAEEIMGQAMRDLGWRRSDVVVSTKLFWGGQGPNDKGLSRKHIVEGLRGSLKRLDMDYVDVVYCH 122          
BLAST of CF417257 vs. ExPASy Swiss-Prot
Match: YAKC_SCHPO (Aldo-keto reductase yakc [NADP+] OS=Schizosaccharomyces pombe GN=yakc PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 60/210 (28.57%), Postives = 94/210 (44.76%), Query Frame = 3
Query:   24 MAFPLRKLELRPLGNTGLRLSCVGFGASPLGNVFGAVSENDAVASVREAFRLGINFFDTSPYYGGTLSEKMLGKALKAAGVPRNEYIVSTKCGRYVD------GFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYMLDRVPPGAVDVILSYCHYSINDSTLGGFTALLE 635
            M+ P RK+     GN    +  +GFG   L  ++G  SE    A +  A  LG  F+D+S  YG   +E+ +G+  K  G  R E  ++TK G   +        +   + + +++D SL RL +D +D+   H     S +  + + + AL+K  EAGKIR+IG++              P  AV V  S     I    +G   A  E
Sbjct:    1 MSIPTRKI-----GND--TVPAIGFGCMGLHAMYGPSSEEANQAVLTHAADLGCTFWDSSDMYGFGANEECIGRWFKQTG-RRKEIFLATKFGYEKNPETGELSLNNEPDYIEKALDLSLKRLGIDCIDLYYVHRF---SGETPIEKIMGALKKCVEAGKIRYIGLSECSANTIRRAAAVYPVSAVQVEYSPFSLEIERPEIGVMKACRE 199          
The following BLAST results are available for this feature:
BLAST of CF417257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PLD_MICLT5.444e-1331.61Pyridoxal 4-dehydrogenase OS=Microbacterium luteol... [more]
YI7E_SCHPO9.374e-1325.42Putative aryl-alcohol dehydrogenase C977.14c OS=Sc... [more]
IN22_MAIZE4.515e-1230.72IN2-2 protein OS=Zea mays GN=IN2-2 PE=2 SV=1[more]
KCAB3_RAT6.019e-1235.25Voltage-gated potassium channel subunit beta-3 OS=... [more]
KCAB3_XENLA1.027e-1135.04Voltage-gated potassium channel subunit beta-3 OS=... [more]
YRPG_BACSU1.663e-1129.88Uncharacterized oxidoreductase yrpG OS=Bacillus su... [more]
KCAB3_HUMAN1.751e-1135.25Voltage-gated potassium channel subunit beta-3 OS=... [more]
KCAB_ORYSJ5.095e-1131.20Probable voltage-gated potassium channel subunit b... [more]
YAKC_SCHPO8.691e-1128.57Aldo-keto reductase yakc [NADP+] OS=Schizosaccharo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-187 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417257 ID=CF417257; Name=CF417257; organism=Citrus sinensis; type=EST; length=718bp
CAGAAGCCCTAAACTTAATTCAAATGGCATTCCCACTTCGCAAATTAGAG
CTCCGACCATTGGGCAACACGGGCCTCCGCCTCAGTTGCGTCGGCTTCGG
CGCCTCGCCGCTCGGCAACGTTTTTGGGGCCGTCTCTGAAAACGACGCCG
TTGCCTCCGTCCGCGAAGCATTTCGCCTTGGCATCAACTTCTTTGACACT
TCTCCATATTATGGAGGGACATTGTCTGAGAAGATGCTTGGTAAGGCACT
GAAAGCTGCGGGCGTTCCGAGAAATGAGTATATTGTGTCAACAAAATGCG
GGCGGTATGTTGACGGTTTTGATTTTAGTGCTGAGAGAGTGACTAGGAGC
ATTGATGAGAGCTTGGCGAGGTTGCAGCTTGATTACGTCGATATACTGCA
GTGCCATGACATTGAATTTGGGTCTCTTGACCAGATTGTGAATGAGACCA
TTCCTGCCCTTCAGAAGCAGAAGGAAGCAGGGAAAATCCGTTTCATTGGT
ATTACCGGACTTCCCTTGGAAATTTTTACCTACATGCTTGATCGGGTGCC
ACCTGGTGCAGTTGATGTAATTCTTTCGTACTGCCATTACAGTATTAATG
ATTCAACATTGGGAGGATTTACTGCCTTACTTGAAGAGCAAGGGTGTAGG
CGTCATTAGTGCTTCCCCTCTTGCAATGGGGCTTCTTACAGATAATGGTC
CCCCAGAATGGCACCCAG
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