CF417262
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: DCEA_ECOLI (Glutamate decarboxylase alpha OS=Escherichia coli (strain K12) GN=gadA PE=1 SV=1) HSP 1 Score: 234.572 bits (597), Expect = 3.762e-61 Identity = 114/226 (50.44%), Postives = 154/226 (68.14%), Query Frame = 2 Query: 2 LDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679 LDGN R NLA+F TW + KLM +INKN++D +EYP + + RCVN++A L++AP + AVG T+GSSEA ML G+A K +W+ + +A GKP DKPN+V G VQ+CW KFARY++VEL+E+ + G MDP + +E DENTI V G T G +E + L+D L + +TG D +H+DAASGGF+APF+ P++ WDFRLP VKSI+ SG K Sbjct: 52 LDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHK 276
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: DCEA_ECOL6 (Glutamate decarboxylase alpha OS=Escherichia coli O6 GN=gadA PE=1 SV=1) HSP 1 Score: 234.572 bits (597), Expect = 3.762e-61 Identity = 114/226 (50.44%), Postives = 154/226 (68.14%), Query Frame = 2 Query: 2 LDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679 LDGN R NLA+F TW + KLM +INKN++D +EYP + + RCVN++A L++AP + AVG T+GSSEA ML G+A K +W+ + +A GKP DKPN+V G VQ+CW KFARY++VEL+E+ + G MDP + +E DENTI V G T G +E + L+D L + +TG D +H+DAASGGF+APF+ P++ WDFRLP VKSI+ SG K Sbjct: 52 LDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHK 276
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: DCEA_ECO57 (Glutamate decarboxylase alpha OS=Escherichia coli O157:H7 GN=gadA PE=2 SV=1) HSP 1 Score: 234.572 bits (597), Expect = 3.762e-61 Identity = 114/226 (50.44%), Postives = 154/226 (68.14%), Query Frame = 2 Query: 2 LDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679 LDGN R NLA+F TW + KLM +INKN++D +EYP + + RCVN++A L++AP + AVG T+GSSEA ML G+A K +W+ + +A GKP DKPN+V G VQ+CW KFARY++VEL+E+ + G MDP + +E DENTI V G T G +E + L+D L + +TG D +H+DAASGGF+APF+ P++ WDFRLP VKSI+ SG K Sbjct: 52 LDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHK 276
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: DCEB_ECOL6 (Glutamate decarboxylase beta OS=Escherichia coli O6 GN=gadB PE=2 SV=2) HSP 1 Score: 232.646 bits (592), Expect = 1.429e-60 Identity = 113/226 (50.00%), Postives = 154/226 (68.14%), Query Frame = 2 Query: 2 LDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679 LDGN R NLA+F TW + KLM +INKN++D +EYP + + RCVN++A L++AP + AVG T+GSSEA ML G+A K +W+ + +A GKP +KPN+V G VQ+CW KFARY++VEL+E+ + G MDP + +E DENTI V G T G +E + L+D L + +TG D +H+DAASGGF+APF+ P++ WDFRLP VKSI+ SG K Sbjct: 52 LDGNARQNLATFCQTWDDDNVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTNKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHK 276
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: DCE_LACLM (Glutamate decarboxylase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gadB PE=1 SV=2) HSP 1 Score: 221.476 bits (563), Expect = 3.295e-57 Identity = 112/227 (49.34%), Postives = 152/227 (66.96%), Query Frame = 2 Query: 5 DGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFD--KPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679 +GN RLNLA+F T+MEPE KLM + KN +D EYP TTE++NRCVN+IA L+NA + E +G T+GSSEA ML G+A K W+ + + G + KPN+V + QVCWEKF Y+++E++EV + + ++ K ++ VDE TI V I+G T G ++D+K L++L+ E NK+T + IHVDAASGG APF+ PELEWDFRL V SIN SG K Sbjct: 53 EGNARLNLATFCQTYMEPEAVKLMSQTLEKNAIDKSEYPRTTEIENRCVNMIADLWNA--SEKEKFMGTSTIGSSEACMLGGMAMKFSWRKRAEKLGLDINAKKPNLVISSGYQVCWEKFCVYWDIEMREVPMDREHMSINLEKVMDYVDEYTIGVVGIMGITYTGRYDDIKALDNLIEEYNKQTDYKVYIHVDAASGGLYAPFVEPELEWDFRLKNVISINTSGHK 277
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: DCE_LACLA (Glutamate decarboxylase OS=Lactococcus lactis subsp. lactis GN=gadB PE=1 SV=1) HSP 1 Score: 221.476 bits (563), Expect = 3.295e-57 Identity = 112/227 (49.34%), Postives = 153/227 (67.40%), Query Frame = 2 Query: 5 DGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFD--KPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679 +GN RLNLA+F T+MEPE KLM + KN +D EYP TTE++NRCVN+IA L+NA + E +G T+GSSEA ML G+A K W+ + + G + KPN+V + QVCWEKF Y+++E++EV + + + ++ K ++ VDE TI V I+G T G ++D+K L++L+ E NK+T + IHVDAASGG APF+ PELEWDFRL V SIN SG K Sbjct: 53 EGNARLNLATFCQTYMEPEAVKLMSQTLEKNAIDKSEYPRTTEIENRCVNMIADLWNA--SEKEKFMGTSTIGSSEACMLGGMAMKFSWRKRAEKLGLDINAKKPNLVISSGYQVCWEKFCIYWDIEMREVPMDKEHMSINLDKVMDYVDEYTIGVVGIMGITYTGRYDDIKALDNLIEEYNKQTDYKVYIHVDAASGGLYAPFVEPELEWDFRLKNVISINTSGHK 277
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: DCEC_LISIN (Probable glutamate decarboxylase gamma OS=Listeria innocua GN=lin2528 PE=3 SV=1) HSP 1 Score: 203.756 bits (517), Expect = 7.111e-52 Identity = 105/227 (46.26%), Postives = 142/227 (62.56%), Query Frame = 2 Query: 5 DGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFD--KPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679 +GN R NLA+F T+ME E + LM + KN +D EYP T EL+NRCVNI+A L+NAP E S +G TVGSSEA ML GLA K +W+N + G +PN++ + QVCWEKF Y++V+++ V + + + +D K E+VDE TI + ILG T G+F+D+ LL++ + N+ IH+D ASG PF+ PEL WDFRL V SIN SG K Sbjct: 54 EGNARQNLATFCQTYMEKEAEILMAETLEKNAIDKSEYPQTAELENRCVNILADLWNAPKEMSY--LGTSTVGSSEACMLGGLAMKFRWRNNAEKRGLDIQAKRPNLIISSGYQVCWEKFCVYWDVDMRVVPMDKEHLSLDVEKVFELVDEYTIGIVGILGITYTGKFDDIALLDEKVEAYNEANEHQLVIHIDGASGAMFTPFVNPELPWDFRLKNVVSINTSGHK 278
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: DCEC_LISMO (Probable glutamate decarboxylase gamma OS=Listeria monocytogenes GN=lmo2434 PE=3 SV=1) HSP 1 Score: 202.986 bits (515), Expect = 1.213e-51 Identity = 104/227 (45.81%), Postives = 143/227 (63.00%), Query Frame = 2 Query: 5 DGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFD--KPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679 +GN R NLA+F T+ME E + LM + KN +D EYP T EL+NRCVNI+A L+NAP + S +G TVGSSEA ML GLA K +W+N + G +PN++ + QVCWEKF Y++V+++ V + + + +D K ++VDE TI V ILG T G+F+D++LL++ + N+ IH+D ASG PF+ PEL WDFRL V SIN SG K Sbjct: 54 EGNARQNLATFCQTYMEKEAEILMAETLEKNAIDKSEYPQTAELENRCVNILADLWNAPKDMSY--LGTSTVGSSEACMLGGLAMKFRWRNNAEKRGLDIQAKRPNLIISSGYQVCWEKFCVYWDVDMRVVPMDKNHLSLDVDKVFDLVDEYTIGVVGILGITYTGKFDDIQLLDEKVEAYNETNEHQLVIHIDGASGAMFTPFVNPELPWDFRLKNVVSINTSGHK 278
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: DCEB_LISIN (Glutamate decarboxylase beta OS=Listeria innocua GN=gadB PE=3 SV=1) HSP 1 Score: 201.83 bits (512), Expect = 2.702e-51 Identity = 103/227 (45.37%), Postives = 145/227 (63.88%), Query Frame = 2 Query: 5 DGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPF--DKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679 +G+ R NLA+F T+ME E KLM + KN +D EYP T EL+NRCVNIIA L++AP + + +G T+GSSEA ML G+A K W+ + + G KPN+V + QVCWEKF Y++++++ V + + + ++ + ++ VDE TI V ILG T G ++D+ LN+ L E N +T + IHVDAASGGF PF+ P++ WDFRL V SIN SG K Sbjct: 51 EGSARQNLATFCQTYMEDEATKLMSETLEKNAIDKSEYPRTAELENRCVNIIADLWHAPKD--QKFMGTSTIGSSEACMLGGMAMKFAWRKRAEKLGLDIYAQKPNLVISSGYQVCWEKFCVYWDIDMRVVPMDKDHMQLNTDQVLDYVDEYTIGVVGILGITYTGRYDDIYALNEKLEEYNSKTDYKVYIHVDAASGGFFTPFVEPDIIWDFRLKNVISINTSGHK 275
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: DCEB_LISMO (Glutamate decarboxylase beta OS=Listeria monocytogenes GN=gadB PE=3 SV=2) HSP 1 Score: 201.06 bits (510), Expect = 4.609e-51 Identity = 103/227 (45.37%), Postives = 145/227 (63.88%), Query Frame = 2 Query: 5 DGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPF--DKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679 +G+ R NLA+F T+ME E KLM + KN +D EYP T EL+NRCVNIIA L++AP + + +G T+GSSEA ML G+A K W+ + + G KPN+V + QVCWEKF Y++++++ V + + + ++ + ++ VDE TI V ILG T G ++D+ LN+ L E N +T + IHVDAASGGF PF+ P++ WDFRL V SIN SG K Sbjct: 51 EGSARQNLATFCQTYMEDEATKLMSETLEKNAIDKSEYPRTAELENRCVNIIADLWHAPKD--QKFMGTSTIGSSEACMLGGMAMKFAWRKRAEKLGLDIYAKKPNLVISSGYQVCWEKFCVYWDIDMRVVPMDKEHMQLNTDQVLDYVDEYTIGVVGILGITYTGRYDDIYALNEKLEEYNSKTDYKVYIHVDAASGGFFTPFVEPDIIWDFRLKNVISINTSGHK 275 The following BLAST results are available for this feature:
BLAST of CF417262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 38
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417262 ID=CF417262; Name=CF417262; organism=Citrus sinensis; type=EST; length=681bpback to top |