CF417262

Overview
NameCF417262
Unique NameCF417262
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: DCEA_ECOLI (Glutamate decarboxylase alpha OS=Escherichia coli (strain K12) GN=gadA PE=1 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.762e-61
Identity = 114/226 (50.44%), Postives = 154/226 (68.14%), Query Frame = 2
Query:    2 LDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679
            LDGN R NLA+F  TW +    KLM  +INKN++D +EYP +  +  RCVN++A L++AP   +  AVG  T+GSSEA ML G+A K +W+ + +A GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G   MDP + +E  DENTI V    G T  G +E  + L+D L +   +TG D  +H+DAASGGF+APF+ P++ WDFRLP VKSI+ SG K
Sbjct:   52 LDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHK 276          
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: DCEA_ECOL6 (Glutamate decarboxylase alpha OS=Escherichia coli O6 GN=gadA PE=1 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.762e-61
Identity = 114/226 (50.44%), Postives = 154/226 (68.14%), Query Frame = 2
Query:    2 LDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679
            LDGN R NLA+F  TW +    KLM  +INKN++D +EYP +  +  RCVN++A L++AP   +  AVG  T+GSSEA ML G+A K +W+ + +A GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G   MDP + +E  DENTI V    G T  G +E  + L+D L +   +TG D  +H+DAASGGF+APF+ P++ WDFRLP VKSI+ SG K
Sbjct:   52 LDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHK 276          
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: DCEA_ECO57 (Glutamate decarboxylase alpha OS=Escherichia coli O157:H7 GN=gadA PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.762e-61
Identity = 114/226 (50.44%), Postives = 154/226 (68.14%), Query Frame = 2
Query:    2 LDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679
            LDGN R NLA+F  TW +    KLM  +INKN++D +EYP +  +  RCVN++A L++AP   +  AVG  T+GSSEA ML G+A K +W+ + +A GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G   MDP + +E  DENTI V    G T  G +E  + L+D L +   +TG D  +H+DAASGGF+APF+ P++ WDFRLP VKSI+ SG K
Sbjct:   52 LDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHK 276          
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: DCEB_ECOL6 (Glutamate decarboxylase beta OS=Escherichia coli O6 GN=gadB PE=2 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 1.429e-60
Identity = 113/226 (50.00%), Postives = 154/226 (68.14%), Query Frame = 2
Query:    2 LDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679
            LDGN R NLA+F  TW +    KLM  +INKN++D +EYP +  +  RCVN++A L++AP   +  AVG  T+GSSEA ML G+A K +W+ + +A GKP +KPN+V G  VQ+CW KFARY++VEL+E+ +  G   MDP + +E  DENTI V    G T  G +E  + L+D L +   +TG D  +H+DAASGGF+APF+ P++ WDFRLP VKSI+ SG K
Sbjct:   52 LDGNARQNLATFCQTWDDDNVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTNKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHK 276          
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: DCE_LACLM (Glutamate decarboxylase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gadB PE=1 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 3.295e-57
Identity = 112/227 (49.34%), Postives = 152/227 (66.96%), Query Frame = 2
Query:    5 DGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFD--KPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679
            +GN RLNLA+F  T+MEPE  KLM   + KN +D  EYP TTE++NRCVN+IA L+NA   + E  +G  T+GSSEA ML G+A K  W+ + +  G   +  KPN+V  +  QVCWEKF  Y+++E++EV +   +  ++  K ++ VDE TI V  I+G T  G ++D+K L++L+ E NK+T +   IHVDAASGG  APF+ PELEWDFRL  V SIN SG K
Sbjct:   53 EGNARLNLATFCQTYMEPEAVKLMSQTLEKNAIDKSEYPRTTEIENRCVNMIADLWNA--SEKEKFMGTSTIGSSEACMLGGMAMKFSWRKRAEKLGLDINAKKPNLVISSGYQVCWEKFCVYWDIEMREVPMDREHMSINLEKVMDYVDEYTIGVVGIMGITYTGRYDDIKALDNLIEEYNKQTDYKVYIHVDAASGGLYAPFVEPELEWDFRLKNVISINTSGHK 277          
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: DCE_LACLA (Glutamate decarboxylase OS=Lactococcus lactis subsp. lactis GN=gadB PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.295e-57
Identity = 112/227 (49.34%), Postives = 153/227 (67.40%), Query Frame = 2
Query:    5 DGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFD--KPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679
            +GN RLNLA+F  T+MEPE  KLM   + KN +D  EYP TTE++NRCVN+IA L+NA   + E  +G  T+GSSEA ML G+A K  W+ + +  G   +  KPN+V  +  QVCWEKF  Y+++E++EV + + +  ++  K ++ VDE TI V  I+G T  G ++D+K L++L+ E NK+T +   IHVDAASGG  APF+ PELEWDFRL  V SIN SG K
Sbjct:   53 EGNARLNLATFCQTYMEPEAVKLMSQTLEKNAIDKSEYPRTTEIENRCVNMIADLWNA--SEKEKFMGTSTIGSSEACMLGGMAMKFSWRKRAEKLGLDINAKKPNLVISSGYQVCWEKFCIYWDIEMREVPMDKEHMSINLDKVMDYVDEYTIGVVGIMGITYTGRYDDIKALDNLIEEYNKQTDYKVYIHVDAASGGLYAPFVEPELEWDFRLKNVISINTSGHK 277          
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: DCEC_LISIN (Probable glutamate decarboxylase gamma OS=Listeria innocua GN=lin2528 PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.111e-52
Identity = 105/227 (46.26%), Postives = 142/227 (62.56%), Query Frame = 2
Query:    5 DGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFD--KPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679
            +GN R NLA+F  T+ME E + LM   + KN +D  EYP T EL+NRCVNI+A L+NAP E S   +G  TVGSSEA ML GLA K +W+N  +  G      +PN++  +  QVCWEKF  Y++V+++ V + + +  +D  K  E+VDE TI +  ILG T  G+F+D+ LL++ +   N+       IH+D ASG    PF+ PEL WDFRL  V SIN SG K
Sbjct:   54 EGNARQNLATFCQTYMEKEAEILMAETLEKNAIDKSEYPQTAELENRCVNILADLWNAPKEMSY--LGTSTVGSSEACMLGGLAMKFRWRNNAEKRGLDIQAKRPNLIISSGYQVCWEKFCVYWDVDMRVVPMDKEHLSLDVEKVFELVDEYTIGIVGILGITYTGKFDDIALLDEKVEAYNEANEHQLVIHIDGASGAMFTPFVNPELPWDFRLKNVVSINTSGHK 278          
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: DCEC_LISMO (Probable glutamate decarboxylase gamma OS=Listeria monocytogenes GN=lmo2434 PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.213e-51
Identity = 104/227 (45.81%), Postives = 143/227 (63.00%), Query Frame = 2
Query:    5 DGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFD--KPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679
            +GN R NLA+F  T+ME E + LM   + KN +D  EYP T EL+NRCVNI+A L+NAP + S   +G  TVGSSEA ML GLA K +W+N  +  G      +PN++  +  QVCWEKF  Y++V+++ V + + +  +D  K  ++VDE TI V  ILG T  G+F+D++LL++ +   N+       IH+D ASG    PF+ PEL WDFRL  V SIN SG K
Sbjct:   54 EGNARQNLATFCQTYMEKEAEILMAETLEKNAIDKSEYPQTAELENRCVNILADLWNAPKDMSY--LGTSTVGSSEACMLGGLAMKFRWRNNAEKRGLDIQAKRPNLIISSGYQVCWEKFCVYWDVDMRVVPMDKNHLSLDVDKVFDLVDEYTIGVVGILGITYTGKFDDIQLLDEKVEAYNETNEHQLVIHIDGASGAMFTPFVNPELPWDFRLKNVVSINTSGHK 278          
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: DCEB_LISIN (Glutamate decarboxylase beta OS=Listeria innocua GN=gadB PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.702e-51
Identity = 103/227 (45.37%), Postives = 145/227 (63.88%), Query Frame = 2
Query:    5 DGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPF--DKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679
            +G+ R NLA+F  T+ME E  KLM   + KN +D  EYP T EL+NRCVNIIA L++AP +  +  +G  T+GSSEA ML G+A K  W+ + +  G      KPN+V  +  QVCWEKF  Y++++++ V + + +  ++  + ++ VDE TI V  ILG T  G ++D+  LN+ L E N +T +   IHVDAASGGF  PF+ P++ WDFRL  V SIN SG K
Sbjct:   51 EGSARQNLATFCQTYMEDEATKLMSETLEKNAIDKSEYPRTAELENRCVNIIADLWHAPKD--QKFMGTSTIGSSEACMLGGMAMKFAWRKRAEKLGLDIYAQKPNLVISSGYQVCWEKFCVYWDIDMRVVPMDKDHMQLNTDQVLDYVDEYTIGVVGILGITYTGRYDDIYALNEKLEEYNSKTDYKVYIHVDAASGGFFTPFVEPDIIWDFRLKNVISINTSGHK 275          
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: DCEB_LISMO (Glutamate decarboxylase beta OS=Listeria monocytogenes GN=gadB PE=3 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 4.609e-51
Identity = 103/227 (45.37%), Postives = 145/227 (63.88%), Query Frame = 2
Query:    5 DGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPF--DKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679
            +G+ R NLA+F  T+ME E  KLM   + KN +D  EYP T EL+NRCVNIIA L++AP +  +  +G  T+GSSEA ML G+A K  W+ + +  G      KPN+V  +  QVCWEKF  Y++++++ V + + +  ++  + ++ VDE TI V  ILG T  G ++D+  LN+ L E N +T +   IHVDAASGGF  PF+ P++ WDFRL  V SIN SG K
Sbjct:   51 EGSARQNLATFCQTYMEDEATKLMSETLEKNAIDKSEYPRTAELENRCVNIIADLWHAPKD--QKFMGTSTIGSSEACMLGGMAMKFAWRKRAEKLGLDIYAKKPNLVISSGYQVCWEKFCVYWDIDMRVVPMDKEHMQLNTDQVLDYVDEYTIGVVGILGITYTGRYDDIYALNEKLEEYNSKTDYKVYIHVDAASGGFFTPFVEPDIIWDFRLKNVISINTSGHK 275          
The following BLAST results are available for this feature:
BLAST of CF417262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
DCEA_ECOLI3.762e-6150.44Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEA_ECOL63.762e-6150.44Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEA_ECO573.762e-6150.44Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEB_ECOL61.429e-6050.00Glutamate decarboxylase beta OS=Escherichia coli O... [more]
DCE_LACLM3.295e-5749.34Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCE_LACLA3.295e-5749.34Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCEC_LISIN7.111e-5246.26Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCEC_LISMO1.213e-5145.81Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCEB_LISIN2.702e-5145.37Glutamate decarboxylase beta OS=Listeria innocua G... [more]
DCEB_LISMO4.609e-5145.37Glutamate decarboxylase beta OS=Listeria monocytog... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-192 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417262 ID=CF417262; Name=CF417262; organism=Citrus sinensis; type=EST; length=681bp
GCTCGACGGGAATCCAAGATTGAACTTGGCTTCCTTCGTCACAACGTGGA
TGGAGCCTGAATGTGACAAGCTTATGATGGCTGCCATTAACAAGAACTAC
GTTGACATGGATGAGTATCCTGTCACCACCGAGCTTCAGAATCGATGTGT
GAACATCATTGCCCGACTGTTCAATGCTCCACTGGAGGACTCCGAGACGG
CTGTCGGAGTTGGAACCGTAGGATCATCGGAAGCCATAATGTTGGCCGGC
CTTGCATTCAAAAGAAAGTGGCAGAACAAGCGCAAGGCTGAAGGAAAGCC
CTTTGACAAACCCAACATTGTCACTGGAGCGAACGTTCAGGTCTGCTGGG
AGAAATTTGCAAGGTATTTTGAGGTAGAGTTGAAGGAAGTGAAGCTGTCG
GAAGGCTACTATGTGATGGACCCAGTCAAAGCTGTAGAAATGGTGGATGA
AAACACTATCTGTGTTGCTGCTATTCTGGGTTCTACTCTTAATGGAGAAT
TTGAAGATGTCAAGCTCTTGAACGACCTTTTGGCAGAGAAGAACAAGGAA
ACAGGATGGGATACTCCAATTCATGTTGATGCTGCAAGTGGTGGCTTCAT
TGCACCATTTTTGTACCCAGAGCTTGAATGGGACTTCCGCTTGCCGCTGG
TGAAGAGTATTAATGTTAGTGGCCCCAAGTA
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