CF417262

Overview
NameCF417262
Unique NameCF417262
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: DCEA_LISMO (Glutamate decarboxylase alpha OS=Listeria monocytogenes GN=gadA PE=3 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 1.027e-50
Identity = 102/227 (44.93%), Postives = 146/227 (64.32%), Query Frame = 2
Query:    5 DGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFD--KPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679
            +G+ R NLA+F  T+MEPE +++M   + KN +D  EYP T +L++ CVN++A L+N  +++SE  +G  TVGSSEA ML G+A K +W++     G      KP++V  +  QVCWEKF  Y+++EL+EV +SE +  ++    ++ VDE TI +  ILG T  G+F+D+  LNDL+ + N     +  IHVD ASG    PF+ P LEWDFRLP V SIN SG K
Sbjct:   49 EGSARQNLATFCQTYMEPEAEQIMAETMEKNAIDKSEYPQTAKLESSCVNMLADLWN--VDESEHYMGTSTVGSSEACMLGGMAMKFRWRSAALKNGLDIHAKKPSLVISSGYQVCWEKFCVYWDIELREVPMSEEHLSINTDIIMDYVDEYTIGIVGILGITYTGKFDDIMTLNDLVEDYNNTHDNEVVIHVDGASGAMFTPFVEPGLEWDFRLPNVVSINTSGHK 273          
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: DCE_YEAST (Glutamate decarboxylase OS=Saccharomyces cerevisiae GN=GAD1 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.274e-47
Identity = 107/239 (44.77%), Postives = 142/239 (59.41%), Query Frame = 2
Query:    2 LDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLS-EGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAE-KNKETGW---DTPIHVDAASGGFIAPF--------LYPELEWDFRLPLVKSINVSGPK 679
            LDGNP LNLASFV T+   +  KL+   + KN  D DEYP   EL  RC++++A+L++A     E  +G  T GSSEAIML GLA K++W+++ K  GK   KPNI+  +  QV  EKF RYFEVE + V +S   ++++DP    + VDENTI    ILG+T  G  E+V+ + D+L++ + K   W   D PIH D ASGGFI PF         Y    W F  P V S+N SG K
Sbjct:   82 LDGNPHLNLASFVNTFTTDQARKLIDENLTKNLADNDEYPQLIELTQRCISMLAQLWHA--NPDEEPIGCATTGSSEAIMLGGLAMKKRWEHRMKNAGKDASKPNIIMSSACQVALEKFTRYFEVECRLVPVSHRSHHMLDPESLWDYVDENTIGCFVILGTTYTGHLENVEKVADVLSQIEAKHPDWSNTDIPIHADGASGGFIIPFGFEKEHMKAYGMERWGFNHPRVVSMNTSGHK 318          
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: MFNA_UNCMA (L-tyrosine decarboxylase OS=Uncultured methanogenic archaeon RC-I GN=mfnA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.287e-16
Identity = 60/223 (26.91%), Postives = 105/223 (47.09%), Query Frame = 2
Query:   14 PRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVG-VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679
            P   + S + T   P   K     +N N  D   +P T ++++RC+ +I  L + P      A G + T G+   I     A + K  ++R+A        NIV   +    +EK ++   + ++   L +     DP +   ++D+NTI + A+ G+T  G+ + ++ +  L  E       D  +HVDAA GGF+ PF+    ++DF +P V+SI +   K
Sbjct:   24 PYGRVLSSMCTNPHPIAVKAHQEFVNTNLGDPKLFPGTADIEHRCIGLIGDLLHLP-----AATGYISTGGTESNIQALRTAIQMKHTDRRRA--------NIVVPESAHYSFEKASQMLGIAIRRAPLDD-LLRADPSEMAALIDKNTIALVAVAGTTEFGQIDPIEEIGRLAQEH------DLYLHVDAAFGGFVIPFMDRPAKFDFEIPGVQSITIDPHK 226          
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: MFNA_METLZ (L-tyrosine decarboxylase OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=mfnA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.389e-15
Identity = 65/195 (33.33%), Postives = 95/195 (48.72%), Query Frame = 2
Query:   95 NYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679
            N  D   +P TT++++R V+ +  L + P        G GT  + +AI +A          K K E K    PNIV  A+    ++K      +E++ V   + Y V D  K  EMVD+NTI V+AI G+T  G  +DV+ +  +  E       D   HVDAA GG + PFL     +DF +P V SI++   K
Sbjct:   51 NLGDPGLFPGTTKIEDRLVHSLGELMHHPGAGGYATSG-GTESNLQAIRIA---------KKLKPEIK---NPNIVVPASAHFSFDKTCDILGLEMRTVPYGKNYTV-DCDKMAEMVDKNTISVSAIAGTTEYGMIDDVERIAKIALEN------DLFFHVDAAFGGMVIPFLPNPAPFDFEVPGVSSISLDPHK 225          
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: MFNA_METTP (L-tyrosine decarboxylase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=mfnA PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.186e-14
Identity = 61/222 (27.48%), Postives = 98/222 (44.14%), Query Frame = 2
Query:   14 PRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679
            P   L S + T   P   +     +  N  D   +P T E++ R V I+  L          + G GT  + +A+  A           R + G+     NIV   +    ++K A    +E+++ +L E   V D      ++D+ T+C+  I G+T  G+ + +  L++L  E         P+HVDAA GGF+ PFL  +  WDFR   V+SI +   K
Sbjct:   27 PYDRLLSTMCTRPHPVAVRAYSMFLETNLGDPGLFPGTAEIERRVVGILGSLLGCSDATGYVSTG-GTESNIQAVRAA-----------RNSSGRR--DGNIVVPRSAHFSFDKIADLLNLEVRKAELDESLRV-DVGDVERLIDDRTVCLVGIAGTTEFGQVDPIGDLSELAIENG------IPLHVDAAFGGFVLPFLEKDCMWDFRAEGVQSITIDPHK 227          
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: SGPL_YEAST (Sphingosine-1-phosphate lyase OS=Saccharomyces cerevisiae GN=DPL1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.023e-14
Identity = 58/195 (29.74%), Postives = 101/195 (51.79%), Query Frame = 2
Query:   95 NYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFL----YPELE-WDFRLPLVKSIN 664
            N +  D +P   ++++  V+++ R+FNAP   S+T  G  T G +E+++LA L+ K    + R        +P I+        ++K A YF ++L+ V+L    Y +D  K  + +++NTI +     +  +G  +D++ L   +A+K K      P+HVD+  G FI  F+    Y  L   DFR+P V SI+
Sbjct:  195 NQLHPDVFPAVRKMESEVVSMVLRMFNAP---SDTGCGTTTSGGTESLLLACLSAKMYALHHR-----GITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFINKNTILLVGSAPNFPHGIADDIEGLGK-IAQKYK-----LPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSIS 375          
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: MFNA_METHJ (L-tyrosine decarboxylase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=mfnA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14
Identity = 58/195 (29.74%), Postives = 95/195 (48.72%), Query Frame = 2
Query:   95 NYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679
            N  D   +P T  L++R +   A L++ P     +A G  T G +E+ +   L F +K +N ++        PNI+  A+    +EK     ++E++ V + E Y  M    A E++D+NT C+  + G+T  G  + +  L  L  ++         +HVDAA GG++ PFL     +DF +P V SI V   K
Sbjct:   51 NLGDPGLFPGTATLEDRLIRWFADLYHEP-----SAGGCTTSGGTESNIQV-LRFCKKTKNVKE--------PNIIVPASAHFSFEKACGMMDIEMRVVPVDEQYR-MKTDAAGELIDKNTCCIVGVAGTTEYGMTDPIPALGKLAEQEGVH------LHVDAAFGGYVLPFLDDAPPFDFSVPGVGSIAVDPHK 224          
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: MFNA_METB6 (L-tyrosine decarboxylase OS=Methanoregula boonei (strain 6A8) GN=mfnA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12
Identity = 60/219 (27.40%), Postives = 99/219 (45.21%), Query Frame = 2
Query:   26 LASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEG-KPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679
            + S + T   P   +     +  N  D   +P T  L+   V  +  LF+      + A G  T G +E+ +          Q  R A+  +P   PN+V   +V   ++K      +E++ V L     +M   KA E++D+NTIC+  + G+T  G  + +  L  + A++      D  +HVDAA GG + PFL   + +DF LP V ++ V   K
Sbjct:   28 ILSSMCTLPHPVAVRAHCMFMETNLGDPGLFPGTAALERLLVERLGTLFH-----HKNAGGYATSGGTESNI----------QALRLAKALRPGSSPNVVLPESVHFSFKKACDLLSLEMRSVPLGTDRRIMAD-KAAELIDKNTICLVGVAGTTEYGMVDPIADLAKIAAQQ------DIFLHVDAAFGGMVIPFLPKPVPFDFALPGVTTLAVDPHK 224          
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: MFNA_METAC (L-tyrosine decarboxylase OS=Methanosarcina acetivorans GN=mfnA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12
Identity = 57/206 (27.67%), Postives = 94/206 (45.63%), Query Frame = 2
Query:   86 INKNYVDMDEYPVTTELQNRCVNIIARLFNAPLED-------SETAVGVGTVGSSEAIMLAGLAFKRK-WQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679
            I  N  D+  +   + L+   V ++  L +AP  D         +A G  T G +E+ + A    K      K++ +G P    NIV   +    ++K A    +E++   L   + V D      ++D NTI +  I G+T  G+ + +  L+++  E       +  +H+DAA GGF+ PFL     +DF+LP V SI V   K
Sbjct:   48 IEANLGDLGLFAGASRLEQEVVGMLGELLHAPSIDVPFGGSCESSACGYLTTGGTESNIQAVRGMKNLVTTGKKELKGAP----NIVIPESAHFSFDKVADMMGIEVRRASLDSEFRV-DMASIESLIDANTIGLIGIAGNTEFGQIDPIDKLSEIALEN------ELFLHIDAAFGGFVIPFLEKPQPFDFKLPGVTSIAVDPHK 242          
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: MFNA_METTH (L-tyrosine decarboxylase OS=Methanobacterium thermoautotrophicum GN=mfnA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.194e-12
Identity = 60/202 (29.70%), Postives = 96/202 (47.52%), Query Frame = 2
Query:   86 INKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLY---PEL-EWDFRLPLVKSINVSGPK 679
            +  N  D   +  T EL++  + ++  L + P      A G    G +EA ++A     R  +N   AE     KP I+   +    + K A    + L+E +L + Y V D     +++ ENT+ V  + G+T  G  + V+ L+++  ++      D  +H+DAA GGFI PFL     EL E+DF+L  V SI V   K
Sbjct:   28 LESNLGDPGLFRGTRELESGVIGMLGELLSEP-----DAAGHIITGGTEANLMA----MRAARNMAGAE-----KPEIIVPKSAHFSFRKAADILGLRLREAELDQDYRV-DVESVRKLISENTVAVVGVAGTTELGRIDPVEELSEICLDE------DIHLHIDAAFGGFIIPFLRETGAELPEFDFKLQGVSSITVDPHK 208          
The following BLAST results are available for this feature:
BLAST of CF417262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
DCEA_LISMO1.027e-5044.93Glutamate decarboxylase alpha OS=Listeria monocyto... [more]
DCE_YEAST5.274e-4744.77Glutamate decarboxylase OS=Saccharomyces cerevisia... [more]
MFNA_UNCMA6.287e-1626.91L-tyrosine decarboxylase OS=Uncultured methanogeni... [more]
MFNA_METLZ2.389e-1533.33L-tyrosine decarboxylase OS=Methanocorpusculum lab... [more]
MFNA_METTP1.186e-1427.48L-tyrosine decarboxylase OS=Methanosaeta thermophi... [more]
SGPL_YEAST2.023e-1429.74Sphingosine-1-phosphate lyase OS=Saccharomyces cer... [more]
MFNA_METHJ7.686e-1429.74L-tyrosine decarboxylase OS=Methanospirillum hunga... [more]
MFNA_METB62.472e-1227.40L-tyrosine decarboxylase OS=Methanoregula boonei (... [more]
MFNA_METAC2.472e-1227.67L-tyrosine decarboxylase OS=Methanosarcina acetivo... [more]
MFNA_METTH7.194e-1229.70L-tyrosine decarboxylase OS=Methanobacterium therm... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-192 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417262 ID=CF417262; Name=CF417262; organism=Citrus sinensis; type=EST; length=681bp
GCTCGACGGGAATCCAAGATTGAACTTGGCTTCCTTCGTCACAACGTGGA
TGGAGCCTGAATGTGACAAGCTTATGATGGCTGCCATTAACAAGAACTAC
GTTGACATGGATGAGTATCCTGTCACCACCGAGCTTCAGAATCGATGTGT
GAACATCATTGCCCGACTGTTCAATGCTCCACTGGAGGACTCCGAGACGG
CTGTCGGAGTTGGAACCGTAGGATCATCGGAAGCCATAATGTTGGCCGGC
CTTGCATTCAAAAGAAAGTGGCAGAACAAGCGCAAGGCTGAAGGAAAGCC
CTTTGACAAACCCAACATTGTCACTGGAGCGAACGTTCAGGTCTGCTGGG
AGAAATTTGCAAGGTATTTTGAGGTAGAGTTGAAGGAAGTGAAGCTGTCG
GAAGGCTACTATGTGATGGACCCAGTCAAAGCTGTAGAAATGGTGGATGA
AAACACTATCTGTGTTGCTGCTATTCTGGGTTCTACTCTTAATGGAGAAT
TTGAAGATGTCAAGCTCTTGAACGACCTTTTGGCAGAGAAGAACAAGGAA
ACAGGATGGGATACTCCAATTCATGTTGATGCTGCAAGTGGTGGCTTCAT
TGCACCATTTTTGTACCCAGAGCTTGAATGGGACTTCCGCTTGCCGCTGG
TGAAGAGTATTAATGTTAGTGGCCCCAAGTA
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