CF417262

Overview
NameCF417262
Unique NameCF417262
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: MFNA_METMJ (L-tyrosine decarboxylase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=mfnA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.194e-12
Identity = 58/220 (26.36%), Postives = 100/220 (45.45%), Query Frame = 2
Query:   23 NLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVE-MVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679
            N+ S + T   P   +     +  N  D   +P T  L++  V  +  L + P      A G  T G +E+ + A    K+          K    PN+V  A+    + K      +E++ V L  G+ +    +AV+ ++D NT+ +  ++G+T  G  + +  L+++  ++N        +HVDAA GG + PFL   + +DF LP V SI+V   K
Sbjct:   27 NILSSMCTPPHPVAARAHAMFLETNLGDPGLFPGTAALEDLLVRRLGTLMHLP-----DAGGYATSGGTESNIQAFRIAKKL---------KSAKSPNVVVPASSHFSFTKACDILGLEMRTVPLDAGFRM--ETEAVDGLIDHNTVALVGVVGTTEYGMVDPISRLSEIALDRN------VFLHVDAAFGGMVVPFLDRPVPFDFSLPGVSSISVDPHK 224          
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: MFNA_PYRKO (L-tyrosine decarboxylase OS=Pyrococcus kodakaraensis GN=mfnA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 64/217 (29.49%), Postives = 102/217 (47.00%), Query Frame = 2
Query:   44 TWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEM-VDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFL----YPELEWDFRLPLVKSINVSGPK 679
            T+  P   K++M  I++N  D   +  + +++   V+++A L        E   G    G +EA +LA  A        R   G   +KP ++   +    + K A    V+L   +L++ Y V   VK VE  + + TI +  I G+T  G  +D+  L+DL  +      +  P+HVDAA GGF+ PF     Y   ++DFRL  VKSI +   K
Sbjct:   37 TYPHPFAVKVVMKYIDRNLGDPGLHIGSQKIEKEAVDMLANLLGL-----EKGYGHIVSGGTEANILAVRAM-------RNLAG--IEKPELILPESAHFSFIKAAEMLGVKLVWAELNDDYTVN--VKDVEKKITDRTIGIVGIAGTTGLGVVDDIPALSDLALD------YGLPLHVDAAFGGFVIPFAKALGYEIPDFDFRLKGVKSITIDPHK 231          
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: MFNA_METMA (L-tyrosine decarboxylase OS=Methanosarcina mazei GN=mfnA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 57/206 (27.67%), Postives = 95/206 (46.12%), Query Frame = 2
Query:   86 INKNYVDMDEYPVTTELQNRCVNIIARLFNAPLED-------SETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFD-KPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679
            I  N  D+  +    +L+   V ++  L +A   D         +  G  T G +E+ + A     R  +N   A  K F   PNIV  A+    ++K A    +E++   L   + V D     ++++ENTI +  I G+T  G+ + +  L+++  E       +  +HVDAA GGF+ PFL     +DF++P V SI +   K
Sbjct:   48 IEANLGDLGLFAGAHKLEQEVVRMLGNLLHASSIDVPSGGLCQSSVCGYLTTGGTESNIQA----VRGMKNLVTAGKKEFKGTPNIVIPASAHFSFDKVADMMGIEVRRASLDSEFRV-DMASVEKLINENTIGLVGIAGNTEFGQIDPIDKLSEVALEN------ELFLHVDAAFGGFVIPFLEKPQPFDFKVPGVTSIAIDPHK 242          
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: MFNA_ARCFU (L-tyrosine decarboxylase OS=Archaeoglobus fulgidus GN=mfnA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 60/222 (27.03%), Postives = 96/222 (43.24%), Query Frame = 2
Query:   14 PRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679
            P   + S + T   P   +     I  N  D   +  T EL+ + + +I  + +      ET  G    G +EA  + G+   R  Q K        + PNIV        +EK      V++K   + E Y V D  +  +++DENT+ +  I G+T  G+ + +  L+ L  E+  E      +HVDAA GG + PF+     +DF+   V SI +   K
Sbjct:   16 PYSRVLSSMCTVPHPVAVEAHRMFIETNLGDPGIFRGTVELEAKLMRLIGDILHC-----ETPAGYICSGGTEA-NIQGIRAARNVQKK--------ENPNIVIPKTAHFSFEKIGDILGVKIKRAGVDEEYKV-DVGQVEDLMDENTVAIVGIAGTTELGQIDPIVELSKLAEERQVE------LHVDAAFGGLVIPFMDNPYPFDFQNRGVSSITIDPHK 216          
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: MFNA_METKA (L-tyrosine decarboxylase OS=Methanopyrus kandleri GN=mfnA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 59/212 (27.83%), Postives = 92/212 (43.40%), Query Frame = 2
Query:   56 PECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIAR-LFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFL---YPELEWDFRLPLVKSINVSGPK 679
            P   +  +A ++ N  D   +P     +  C+  +A  L + P    E A G    G +EA +LA  A +     +            I+  A     +EK AR   ++L E  L   Y V D     +++  +T  +  I+G+T  G  +D++ L+D+  +         P+HVDAA GGF APFL   YP   + F L  V S+ V   K
Sbjct:   24 PVAAEAFVAGLHVNLGDPYLFPNAYRAERECIGWLAETLLDHPAP--EEAEGSIVSGGTEANILAAYAAREVTGGRE-----------IIVPATRHFSFEKAARMLRMKLVEAPLRSDYTV-DVDAVQDLISRDTALIVGIVGTTETGSVDDIEALSDVAEDHG------VPLHVDAAFGGFTAPFLREEYPLPRFGFDLEAVVSVTVDPHK 215          
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: MFNA_PYRAB (L-tyrosine decarboxylase OS=Pyrococcus abyssi GN=mfnA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 60/203 (29.56%), Postives = 97/203 (47.78%), Query Frame = 2
Query:   86 INKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEM-VDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFL----YPELEWDFRLPLVKSINVSGPK 679
            I++N  D   +P T +++   + +++ L +      E   G    G +EA +LA  AF+    N   AE     +P ++   +    + K      V+L   +L + Y V   VK VE  + +NTI +  I G+T  G  +D+  L+DL  E      +  P+HVDAA GGF+ PF     Y   ++DF+L  V+SI +   K
Sbjct:   53 IDRNLGDPGLHPGTRKIEEEVIEMLSDLLHL-----EKGYGHIVSGGTEANILAVRAFR----NISDAE-----RPELILPKSAHFSFIKAGEMLGVKLVWAELKQDYAV--DVKDVEAKISDNTIGIVGIAGTTGLGVVDDIPALSDLARE------YGIPLHVDAAFGGFVIPFAKSLGYDLPDFDFKLKGVESITIDPHK 233          
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: MFNA_METPE (L-tyrosine decarboxylase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=mfnA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 61/219 (27.85%), Postives = 94/219 (42.92%), Query Frame = 2
Query:   23 NLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679
            ++ S + T   P   K  +  +  N  D   +P T  L+   +  +  LF+   E    A   GT  + +A+ +A            KA+ K  DKPN+V        ++K      +++K V         D  +  + +D+NTI +  I GST  G  +D+  L  +  E+      D  +HVDAA GG + PFL     +DF LP V SI V   K
Sbjct:   27 HILSSMCTVPHPIAVKAHLMFMETNLGDPGLFPGTASLERLLIERLGDLFHHR-EAGGYATSGGTESNIQALRIA------------KAQ-KKVDKPNVVIPETSHFSFKKACDILGIQMKTVPADRSMRT-DISEVSDAIDKNTIALVGIAGSTEYGMVDDIGALATIAEEE------DLYLHVDAAFGGLVIPFLPNPPAFDFALPGVSSIAVDPHK 224          
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: MFNA_METBF (L-tyrosine decarboxylase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=mfnA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 57/205 (27.80%), Postives = 92/205 (44.88%), Query Frame = 2
Query:   86 INKNYVDMDEYPVTTELQNRCVNIIARLFNAPL------EDSETAV-GVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679
            I  N  D+  +     L+   + ++  L +A        E  E++V G  T G +E+ + A    K       K  G+     NIV   +    ++K A    +E+K   L   + V D   A  ++D NTI +  I G+T  G+ + ++ L+ L  E       +  +HVDAA GGF+ PFL     +DF++P V SI +   K
Sbjct:   48 IEANLGDLGLFAGAHRLEKEVIRMLGELLHAQSVEIPSGEACESSVCGYLTTGGTESNIQAIRGMKNLVTEDGKKSGEIL---NIVVPESAHFSFDKVANMMGIEVKRASLDPEFRV-DIASAESLIDANTIGLVGIAGNTEFGQVDPIEELSKLALEN------ELFLHVDAAFGGFVIPFLEKPYSFDFKVPGVTSIAIDPHK 242          
The following BLAST results are available for this feature:
BLAST of CF417262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
MFNA_METMJ7.194e-1226.36L-tyrosine decarboxylase OS=Methanoculleus marisni... [more]
MFNA_PYRKO2.093e-1129.49L-tyrosine decarboxylase OS=Pyrococcus kodakaraens... [more]
MFNA_METMA2.093e-1127.67L-tyrosine decarboxylase OS=Methanosarcina mazei G... [more]
MFNA_ARCFU2.093e-1127.03L-tyrosine decarboxylase OS=Archaeoglobus fulgidus... [more]
MFNA_METKA4.663e-1127.83L-tyrosine decarboxylase OS=Methanopyrus kandleri ... [more]
MFNA_PYRAB7.954e-1129.56L-tyrosine decarboxylase OS=Pyrococcus abyssi GN=m... [more]
MFNA_METPE7.954e-1127.85L-tyrosine decarboxylase OS=Methanosphaerula palus... [more]
MFNA_METBF7.954e-1127.80L-tyrosine decarboxylase OS=Methanosarcina barkeri... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-192 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417262 ID=CF417262; Name=CF417262; organism=Citrus sinensis; type=EST; length=681bp
GCTCGACGGGAATCCAAGATTGAACTTGGCTTCCTTCGTCACAACGTGGA
TGGAGCCTGAATGTGACAAGCTTATGATGGCTGCCATTAACAAGAACTAC
GTTGACATGGATGAGTATCCTGTCACCACCGAGCTTCAGAATCGATGTGT
GAACATCATTGCCCGACTGTTCAATGCTCCACTGGAGGACTCCGAGACGG
CTGTCGGAGTTGGAACCGTAGGATCATCGGAAGCCATAATGTTGGCCGGC
CTTGCATTCAAAAGAAAGTGGCAGAACAAGCGCAAGGCTGAAGGAAAGCC
CTTTGACAAACCCAACATTGTCACTGGAGCGAACGTTCAGGTCTGCTGGG
AGAAATTTGCAAGGTATTTTGAGGTAGAGTTGAAGGAAGTGAAGCTGTCG
GAAGGCTACTATGTGATGGACCCAGTCAAAGCTGTAGAAATGGTGGATGA
AAACACTATCTGTGTTGCTGCTATTCTGGGTTCTACTCTTAATGGAGAAT
TTGAAGATGTCAAGCTCTTGAACGACCTTTTGGCAGAGAAGAACAAGGAA
ACAGGATGGGATACTCCAATTCATGTTGATGCTGCAAGTGGTGGCTTCAT
TGCACCATTTTTGTACCCAGAGCTTGAATGGGACTTCCGCTTGCCGCTGG
TGAAGAGTATTAATGTTAGTGGCCCCAAGTA
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