CF417263
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417263 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1) HSP 1 Score: 294.278 bits (752), Expect = 3.271e-79 Identity = 143/169 (84.62%), Postives = 151/169 (89.35%), Query Frame = 2 Query: 107 DGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGFC*RIQNW--WAVLLGEGLDPLYPGGCF*P 607 +GGR+TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGV FGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVL GF ++ + LGEGLD +YPGG F P Sbjct: 3 EGGRVTMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGF---VEGYRVGGGPLGEGLDKIYPGGAFDP 168
BLAST of CF417263 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1) HSP 1 Score: 273.478 bits (698), Expect = 5.974e-73 Identity = 142/200 (71.00%), Postives = 161/200 (80.50%), Query Frame = 2 Query: 20 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSAPQSI-WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGFC*RIQNWWAV--LLGEGLDPLYPGGCF*P 607 AT A+ +FAGQ A++ S ++ GRITMR+ V KSAP S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVL G ++ + LGE +DPLYPGG F P Sbjct: 4 ATMALSSPSFAGQ-AVKLSPSASE---ISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMG---AVEGYRIAGGPLGEVVDPLYPGGSFDP 196
BLAST of CF417263 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1) HSP 1 Score: 272.707 bits (696), Expect = 1.019e-72 Identity = 143/202 (70.79%), Postives = 156/202 (77.23%), Query Frame = 2 Query: 20 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK----SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGFC*RIQNWWAV--LLGEGLDPLYPGGCF*P 607 +T AI +A AG KVG GRITMR+TV +A S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVL G ++ + LGE +DPLYPGG F P Sbjct: 4 STMAISSTAMAGTPI---------KVGSFGEGRITMRKTVGKPKVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMG---AVEGYRIAGGPLGEVVDPLYPGGSFDP 193
BLAST of CF417263 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1) HSP 1 Score: 270.396 bits (690), Expect = 5.058e-72 Identity = 139/202 (68.81%), Postives = 159/202 (78.71%), Query Frame = 2 Query: 20 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGFC*RIQNWWAV--LLGEGLDPLYPGGCF*P 607 AT A+ S+FAG+ A++ S G G++TMR+TV A S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVL G ++ + LGE +DPLYPGG F P Sbjct: 4 ATMALSSSSFAGK-AVKLSPSSSEITG---NGKVTMRKTVTKAKPLSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMG---AVEGYRVAGGPLGEVVDPLYPGGSFDP 198
BLAST of CF417263 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1) HSP 1 Score: 270.396 bits (690), Expect = 5.058e-72 Identity = 138/200 (69.00%), Postives = 158/200 (79.00%), Query Frame = 2 Query: 20 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKS--APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGFC*RIQNWWAV--LLGEGLDPLYPGGCF*P 607 AT A+ +FAGQ A++ S G GR++MR+TV A S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQV+L G ++ + LGE +DPLYPGG F P Sbjct: 4 ATMALSSPSFAGQ-AVKLSPSAPEITG---NGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMG---AVEGYRVAGGPLGEVVDPLYPGGSFDP 196
BLAST of CF417263 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1) HSP 1 Score: 270.011 bits (689), Expect = 6.606e-72 Identity = 135/200 (67.50%), Postives = 158/200 (79.00%), Query Frame = 2 Query: 20 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGFC*RIQNWWAV--LLGEGLDPLYPGGCF*P 607 A +A+ +A AGQ+ ++ NE RKV R+TMRRTV + S IWYG DRPK+LGPFS +TPSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH+RWAMLGALGC+ PE+L+K+GVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQVVL G ++ + LGE DP+YPGG F P Sbjct: 3 AATAMHSTALAGQSLVKPVNELSRKVLGNVEARVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMG---AVEGYRVAGGPLGEVTDPIYPGGSFDP 199
BLAST of CF417263 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1) HSP 1 Score: 268.855 bits (686), Expect = 1.472e-71 Identity = 137/202 (67.82%), Postives = 154/202 (76.24%), Query Frame = 2 Query: 20 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGFC*RIQNWWAV--LLGEGLDPLYPGGCF*P 607 AT AI S+FAG+ S+ + G+ TMR+TV A S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+ ++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVL G ++ + LGE +DPLYPGG F P Sbjct: 4 ATMAISSSSFAGKAVNVPSSS-----QITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMG---AVEGYRVAGGPLGEVIDPLYPGGSFDP 197
BLAST of CF417263 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1) HSP 1 Score: 268.085 bits (684), Expect = 2.510e-71 Identity = 138/202 (68.32%), Postives = 157/202 (77.72%), Query Frame = 2 Query: 20 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGFC*RIQNWWAV--LLGEGLDPLYPGGCF*P 607 +T A+ S FAG+ A++ S G GR+TMR+T A S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVL G ++ + LGE +DPLYPGG F P Sbjct: 4 STMALSSSTFAGK-AVKLSPSSSEITG---NGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMG---AVEGYRIAGGPLGEVVDPLYPGGSFDP 198
BLAST of CF417263 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1) HSP 1 Score: 267.7 bits (683), Expect = 3.278e-71 Identity = 134/201 (66.67%), Postives = 153/201 (76.12%), Query Frame = 2 Query: 23 TSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAP----QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGFC*RIQNWWAV--LLGEGLDPLYPGGCF*P 607 T A+ S+FAG+ S+ + G++TMR+TV A S WYGPDR KYLGPFS + PSYLTGEFP DYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+ ++NG+KFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQVVL G ++ + LGE +DPLYPGG F P Sbjct: 5 TMALSSSSFAGKAVKLSSSSSE----ITGNGKVTMRKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMG---AVEGYRVAGGPLGEVIDPLYPGGSFDP 198
BLAST of CF417263 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1) HSP 1 Score: 266.159 bits (679), Expect = 9.538e-71 Identity = 136/202 (67.33%), Postives = 157/202 (77.72%), Query Frame = 2 Query: 20 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGFC*RIQNWWAV--LLGEGLDPLYPGGCF*P 607 +T A+ +FAG+ A++ S G G++TMR+T A S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVL G ++ + LGE +DPLYPGG F P Sbjct: 4 STMALSSPSFAGK-AVKLSPSSSEITG---NGKVTMRKTASKAKTVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMG---AVEGYRVAGGPLGEVVDPLYPGGSFDP 198 The following BLAST results are available for this feature:
BLAST of CF417263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 64
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417263 ID=CF417263; Name=CF417263; organism=Citrus sinensis; type=EST; length=615bpback to top |