CF417263

Overview
NameCF417263
Unique NameCF417263
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:457..1067. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417263 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 3.271e-79
Identity = 143/169 (84.62%), Postives = 151/169 (89.35%), Query Frame = 2
Query:  107 DGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGFC*RIQNW--WAVLLGEGLDPLYPGGCF*P 607
            +GGR+TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGV FGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVL GF   ++ +      LGEGLD +YPGG F P
Sbjct:    3 EGGRVTMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGF---VEGYRVGGGPLGEGLDKIYPGGAFDP 168          
BLAST of CF417263 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 5.974e-73
Identity = 142/200 (71.00%), Postives = 161/200 (80.50%), Query Frame = 2
Query:   20 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSAPQSI-WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGFC*RIQNWWAV--LLGEGLDPLYPGGCF*P 607
            AT A+   +FAGQ A++ S        ++  GRITMR+ V KSAP S  WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVL G    ++ +      LGE +DPLYPGG F P
Sbjct:    4 ATMALSSPSFAGQ-AVKLSPSASE---ISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMG---AVEGYRIAGGPLGEVVDPLYPGGSFDP 196          
BLAST of CF417263 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.019e-72
Identity = 143/202 (70.79%), Postives = 156/202 (77.23%), Query Frame = 2
Query:   20 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK----SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGFC*RIQNWWAV--LLGEGLDPLYPGGCF*P 607
            +T AI  +A AG            KVG    GRITMR+TV     +A  S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVL G    ++ +      LGE +DPLYPGG F P
Sbjct:    4 STMAISSTAMAGTPI---------KVGSFGEGRITMRKTVGKPKVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMG---AVEGYRIAGGPLGEVVDPLYPGGSFDP 193          
BLAST of CF417263 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 5.058e-72
Identity = 139/202 (68.81%), Postives = 159/202 (78.71%), Query Frame = 2
Query:   20 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGFC*RIQNWWAV--LLGEGLDPLYPGGCF*P 607
            AT A+  S+FAG+ A++ S       G    G++TMR+TV  A      S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVL G    ++ +      LGE +DPLYPGG F P
Sbjct:    4 ATMALSSSSFAGK-AVKLSPSSSEITG---NGKVTMRKTVTKAKPLSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMG---AVEGYRVAGGPLGEVVDPLYPGGSFDP 198          
BLAST of CF417263 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 5.058e-72
Identity = 138/200 (69.00%), Postives = 158/200 (79.00%), Query Frame = 2
Query:   20 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKS--APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGFC*RIQNWWAV--LLGEGLDPLYPGGCF*P 607
            AT A+   +FAGQ A++ S       G    GR++MR+TV    A  S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQV+L G    ++ +      LGE +DPLYPGG F P
Sbjct:    4 ATMALSSPSFAGQ-AVKLSPSAPEITG---NGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMG---AVEGYRVAGGPLGEVVDPLYPGGSFDP 196          
BLAST of CF417263 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 6.606e-72
Identity = 135/200 (67.50%), Postives = 158/200 (79.00%), Query Frame = 2
Query:   20 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGFC*RIQNWWAV--LLGEGLDPLYPGGCF*P 607
            A +A+  +A AGQ+ ++  NE  RKV      R+TMRRTV  +  S  IWYG DRPK+LGPFS +TPSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH+RWAMLGALGC+ PE+L+K+GVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQVVL G    ++ +      LGE  DP+YPGG F P
Sbjct:    3 AATAMHSTALAGQSLVKPVNELSRKVLGNVEARVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMG---AVEGYRVAGGPLGEVTDPIYPGGSFDP 199          
BLAST of CF417263 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.472e-71
Identity = 137/202 (67.82%), Postives = 154/202 (76.24%), Query Frame = 2
Query:   20 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGFC*RIQNWWAV--LLGEGLDPLYPGGCF*P 607
            AT AI  S+FAG+     S+       +   G+ TMR+TV  A      S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+ ++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVL G    ++ +      LGE +DPLYPGG F P
Sbjct:    4 ATMAISSSSFAGKAVNVPSSS-----QITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMG---AVEGYRVAGGPLGEVIDPLYPGGSFDP 197          
BLAST of CF417263 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 2.510e-71
Identity = 138/202 (68.32%), Postives = 157/202 (77.72%), Query Frame = 2
Query:   20 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGFC*RIQNWWAV--LLGEGLDPLYPGGCF*P 607
            +T A+  S FAG+ A++ S       G    GR+TMR+T   A      S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVL G    ++ +      LGE +DPLYPGG F P
Sbjct:    4 STMALSSSTFAGK-AVKLSPSSSEITG---NGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMG---AVEGYRIAGGPLGEVVDPLYPGGSFDP 198          
BLAST of CF417263 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.278e-71
Identity = 134/201 (66.67%), Postives = 153/201 (76.12%), Query Frame = 2
Query:   23 TSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAP----QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGFC*RIQNWWAV--LLGEGLDPLYPGGCF*P 607
            T A+  S+FAG+     S+       +   G++TMR+TV  A      S WYGPDR KYLGPFS + PSYLTGEFP DYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+ ++NG+KFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQVVL G    ++ +      LGE +DPLYPGG F P
Sbjct:    5 TMALSSSSFAGKAVKLSSSSSE----ITGNGKVTMRKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMG---AVEGYRVAGGPLGEVIDPLYPGGSFDP 198          
BLAST of CF417263 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 9.538e-71
Identity = 136/202 (67.33%), Postives = 157/202 (77.72%), Query Frame = 2
Query:   20 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGFC*RIQNWWAV--LLGEGLDPLYPGGCF*P 607
            +T A+   +FAG+ A++ S       G    G++TMR+T   A      S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVL G    ++ +      LGE +DPLYPGG F P
Sbjct:    4 STMALSSPSFAGK-AVKLSPSSSEITG---NGKVTMRKTASKAKTVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMG---AVEGYRVAGGPLGEVVDPLYPGGSFDP 198          
The following BLAST results are available for this feature:
BLAST of CF417263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB25_SOLLC3.271e-7984.62Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB2B_SOLLC5.974e-7371.00Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB21_MAIZE1.019e-7270.79Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB25_TOBAC5.058e-7268.81Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB22_TOBAC5.058e-7269.00Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB2_PHYPA6.606e-7267.50Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_PETSP1.472e-7167.82Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB2G_SOLLC2.510e-7168.32Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB23_PETSP3.278e-7166.67Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB24_TOBAC9.538e-7167.33Chlorophyll a-b binding protein 40, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-193 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417263 ID=CF417263; Name=CF417263; organism=Citrus sinensis; type=EST; length=615bp
TTTCGCATAAGAACATATGGCAACCTCTGCTATCCAACAATCAGCATTTG
CTGGCCAGACCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGA
GTTGCTGACGGTGGCCGTATCACCATGAGGAGGACTGTCAAATCCGCTCC
CCAGAGCATCTGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCT
CTGAGCAAACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGC
TGGGATACCGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCG
TGAGCTAGAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCT
GCGTCTTCCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCA
GTTTGGTTCAAGGCTGGCGCTCAAATATTCTCTGAAGGTGGCCTTGACTA
TCTTGGCAACCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGG
CCTGCCAGGTTGTGCTTNATGGGTTTTGTTGAAGGATACAGAATTGGTGG
GCGGTCCTCTTGGGTGAAGGACTTGACCCACTTTACCCTGGGGGGTGCTT
TTGACCCACTTGGGT
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