CF417263

Overview
NameCF417263
Unique NameCF417263
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:457..1067. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417263 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.423e-15
Identity = 50/129 (38.76%), Postives = 69/129 (53.49%), Query Frame = 2
Query:   38 QSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQ 424
            +++F G   LR S +F+  VG          R+V  A  ++   PDRP +        P +L G  PGD+G+D  GL +DPE+   N + E++HSRWAMLGA G   PE L+K GV      W+ AG Q
Sbjct:   31 KASFLGGKRLRVS-KFIAPVG---------SRSV--AVSAVAADPDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQ 144          
BLAST of CF417263 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.694e-15
Identity = 53/168 (31.55%), Postives = 82/168 (48.81%), Query Frame = 2
Query:   20 ATSAIQQSAFAGQTALRQSNEF-VRKVGVADGGRITMRR-----TVKSAPQ-SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA 502
            A+S I   AF+  ++ R  +     K     G R+ + +     T +SA    +   PDRP +        P +L G  PGD+G+D  GL++DPE+   N++ E++H RWAMLGA G   PE+L+K G+      W+ AG Q +      +     L   + +L  WA
Sbjct:    6 ASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWA 164          
BLAST of CF417263 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.003e-11
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 2
Query:  206 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQI 427
            + P+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PE+L       G+  WF+AG  +
Sbjct:  195 EPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV 261          
BLAST of CF417263 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.711e-11
Identity = 77/224 (34.38%), Postives = 105/224 (46.88%), Query Frame = 2
Query:   17 MATSAIQQSA---FAGQTALRQS---NEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGFC--*RIQNW---------WAVLLGEGL----DPLYPGGCF 601
            MAT A+  S+   FA + A+RQS         VG +  G +    T    P     G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F + R L   EVI+ R+AMLGA+G + PE L K G+   E    WF+ G  I   G  +Y  +           ++  ++ L GF    R Q+W         + + L +G     +P YPGG F
Sbjct:    1 MATQALVSSSSLTFAAE-AVRQSFRARSLPSSVGCSRKGLVRAAAT----PPVKQGGVDRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPF 207          
The following BLAST results are available for this feature:
BLAST of CF417263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB12_PETHY7.423e-1538.76Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC9.694e-1531.55Chlorophyll a-b binding protein 7, chloroplastic O... [more]
LH18_EUGGR1.003e-1143.24Light-harvesting complex I LH38 proteins (Fragment... [more]
CB23_PEA1.711e-1134.38Chlorophyll a-b binding protein 3, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-193 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417263 ID=CF417263; Name=CF417263; organism=Citrus sinensis; type=EST; length=615bp
TTTCGCATAAGAACATATGGCAACCTCTGCTATCCAACAATCAGCATTTG
CTGGCCAGACCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGA
GTTGCTGACGGTGGCCGTATCACCATGAGGAGGACTGTCAAATCCGCTCC
CCAGAGCATCTGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCT
CTGAGCAAACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGC
TGGGATACCGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCG
TGAGCTAGAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCT
GCGTCTTCCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCA
GTTTGGTTCAAGGCTGGCGCTCAAATATTCTCTGAAGGTGGCCTTGACTA
TCTTGGCAACCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGG
CCTGCCAGGTTGTGCTTNATGGGTTTTGTTGAAGGATACAGAATTGGTGG
GCGGTCCTCTTGGGTGAAGGACTTGACCCACTTTACCCTGGGGGGTGCTT
TTGACCCACTTGGGT
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