CF417269

Overview
NameCF417269
Unique NameCF417269
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length641
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417269 vs. ExPASy Swiss-Prot
Match: CCD94_HUMAN (Coiled-coil domain-containing protein 94 OS=Homo sapiens GN=CCDC94 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.621e-13
Identity = 50/195 (25.64%), Postives = 88/195 (45.13%), Query Frame = 2
Query:   56 NFYYPPEWTPNQGSLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGN--YYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRXSDDYALNKALRAKLRSQRKRVTEEE 634
            N YYPP++ P++    K                   ++R   PFN+ C  C   I KG +FNA K+ V N  Y    I+ F +K   C  +I  +TDP+N +Y +  GA R  +   + + E   +  + E  +L++P   LE++  D + + E    L +++ ++  +   D+            +R+R  +EE
Sbjct:    8 NKYYPPDFDPSKIPKLKLPKDRQY------------VVRLMAPFNMRCKTCGEYIYKGKKFNARKETVQNEVYLGLPIFRFYIKCTRCLAEITFKTDPENTDYTMEHGATRNFQAEKLLEEEEKRVQKEREDEELNNPMKVLENRTKDSKLEMEVLENLQELKDLNQRQAHVDFEAMLRQHRLSEEERRRQQQEE 190          
BLAST of CF417269 vs. ExPASy Swiss-Prot
Match: CCD94_MOUSE (Coiled-coil domain-containing protein 94 OS=Mus musculus GN=Ccdc94 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.961e-13
Identity = 50/195 (25.64%), Postives = 88/195 (45.13%), Query Frame = 2
Query:   56 NFYYPPEWTPNQGSLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGN--YYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRXSDDYALNKALRAKLRSQRKRVTEEE 634
            N YYPP++ P++    K                   ++R   PFN+ C  C   I KG +FNA K+ V N  Y    I+ F +K   C  +I  +TDP+N +Y +  GA R  +   + + E   +  + E  +L++P   LE++  D + + E    L +++ ++  +   D+          + Q ++  EEE
Sbjct:    8 NKYYPPDFDPSKIPKLKLPKDRQY------------VVRLMAPFNMRCKTCGEYIYKGKKFNARKETVQNEAYLGLPIFRFYIKCTRCLAEITFKTDPENTDYTMEHGATRNFQAEKLLEEEEKRVQKEREDEELNNPMKVLENRTKDSKLEMEVLENLQELKDLNQRQAHVDFEAMLRQHRMSQEQWQQQQEEE 190          
BLAST of CF417269 vs. ExPASy Swiss-Prot
Match: CCD94_DICDI (Coiled-coil domain-containing protein 94 homolog OS=Dictyostelium discoideum GN=ccdc94 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.457e-12
Identity = 46/164 (28.05%), Postives = 78/164 (47.56%), Query Frame = 2
Query:   62 YYPPEWTPNQGSLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGN--YYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQRIS 547
            YYPP++ P++ +  K       +            +   +P +I C  C   I +G +FNA+K+ V N  Y   KI+ F ++   C  ++ I+TDPKN EYV  SGA R  E +   D E       E+  +  D    LE++  + +++ E    L +I+ ++
Sbjct:   10 YYPPDFDPSKVAKIKVKRPTFTK------------VTTMLPMSIRCNTCGEYIGRGTKFNAKKETVQNEDYLGIKIYRFFLRCKKCAAELTIKTDPKNSEYVCESGATRNYEPWKETDEEKSNRMTKEQEEE-QDAMIALENRTLESKREMEMLDALEEIKSLN 160          
BLAST of CF417269 vs. ExPASy Swiss-Prot
Match: CWF16_SCHPO (Cell cycle control protein cwf16 OS=Schizosaccharomyces pombe GN=cwf16 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.454e-11
Identity = 49/173 (28.32%), Postives = 78/173 (45.09%), Query Frame = 2
Query:   56 NFYYPPEWTPN---QGSLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVG-NYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKL--SDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGR 556
            N Y PP++ P+        KF G +           G L +R   PF++ C  C   I KG +FNA K++ G  Y+S  I  F ++   C  +I   TDPK+ +Y   SGA R  E +  +  +  E     ER  +   D   +LE +  D +++ +    L +++  S  R
Sbjct:    8 NKYIPPDYDPSIRPPKKKKKFQGPNG----------GKLTVRLMTPFSMRCHTCGEYIYKGKKFNARKEKTGEKYFSIDILRFYIRCTRCAAEITFITDPKHADYAAESGASRNYEPWHEKRLQEYEENELAERNDIPEEDEMEKLEQKTLDTKRQMQISDALDELREKSARR 170          
BLAST of CF417269 vs. ExPASy Swiss-Prot
Match: CWC16_YEAST (Protein CWC16 OS=Saccharomyces cerevisiae GN=YJU2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.204e-11
Identity = 59/223 (26.46%), Postives = 105/223 (47.09%), Query Frame = 2
Query:   47 RADNFYYPPEWTPNQGSLNKFHGQHALRERARKL---DQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYY--STKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGA------QRKTEEFDVEDA-----ETL-------ELPADEERG---KLSDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRXSDDYALNKALRAKLRSQRKRVTEEEA 637
            +A N YYPP++ P          +   R+ A+KL   ++    IR   PF++ C  CN  I K  +FN +K+ +   Y  S KI+  T+  P C + I  +TDP N +YV+  G       Q+  ++ + + A     ETL       E+  +E+ G   +  D    LE + A +Q+++E +  L  +++ +         L  + RA++ ++ K   +E+A
Sbjct:    5 KAINKYYPPDYNP-------LEAEKLSRKMAKKLKTMNKSHASIRLMTPFSMRCLECNEYIPKSRKFNGKKELLKEKYLDSIKIYRLTISCPRCANSIAFRTDPGNSDYVMEVGGVRNYVPQKPNDDLNAKTAVESIDETLQRLVREKEMEQNEKMGIKEQADDKMDLLEKRLAKIQQEQEDDEELENLRKKN---------LEMSQRAEMINRSKHAQQEKA 211          
The following BLAST results are available for this feature:
BLAST of CF417269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
CCD94_HUMAN2.621e-1325.64Coiled-coil domain-containing protein 94 OS=Homo s... [more]
CCD94_MOUSE9.961e-1325.64Coiled-coil domain-containing protein 94 OS=Mus mu... [more]
CCD94_DICDI6.457e-1228.05Coiled-coil domain-containing protein 94 homolog O... [more]
CWF16_SCHPO2.454e-1128.32Cell cycle control protein cwf16 OS=Schizosaccharo... [more]
CWC16_YEAST3.204e-1126.46Protein CWC16 OS=Saccharomyces cerevisiae GN=YJU2 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-199 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417269 ID=CF417269; Name=CF417269; organism=Citrus sinensis; type=EST; length=641bp
TTGATCGTGCTAACTAGAAGAAGAAATGTCTTCTCTTGCAGCTGCTAGAG
CAGATAATTTTTACTATCCTCCAGAATGGACCCCAAATCAGGGTTCTTTG
AACAAGTTTCATGGTCAACATGCTTTGAGGGAAAGAGCAAGAAAGTTAGA
TCAGGGAATTTTGATTATAAGGTTTGAGATGCCTTTCAATATATGGTGCG
GCGGATGCAATTCTATGATTGCAAAGGGTGTTCGTTTCAATGCTGAAAAG
AAGCAAGTGGGAAATTATTACTCTACAAAGATATGGAGTTTTACGATGAA
GTCTCCGTGCTGCAAACATCAGATTGTTATCCAGACAGATCCAAAGAATT
GTGAGTATGTAATTATTAGTGGAGCTCAGCGAAAGACAGAGGAGTTTGAC
GTTGAGGATGCAGAGACTCTTGAACTCCCTGCAGATGAGGAAAGGGGTAA
GCTTTCAGATCCATTTTATCGTCTTGAGCACCAGGAAGCTGACCTGCAGA
AGAAGAAAGAAGCTGAGCCAAGACTGGTGCAAATTCAGAGAATATCTGAT
GGCAGGNTTTCAGACGACTATGCACTAAACAAGGCTCTCAGGGCCAAACT
TCGATCTCAGAGGAAGAGAGTCACCGAAGAGGAGGCTGCTT
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