CF417270

Overview
NameCF417270
Unique NameCF417270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417270 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 1.089e-12
Identity = 23/49 (46.94%), Postives = 31/49 (63.27%), Query Frame = 1
Query:  418 PPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 564
            PPK  F    FHPNV  +G++CL IL E   W PA+T+ ++L+ I  LL
Sbjct:   64 PPKVAFRTKVFHPNVNSNGSICLDILKEQ--WSPALTISKVLLSICSLL 110          

HSP 2 Score: 43.5134 bits (101), Expect = 1.089e-12
Identity = 23/73 (31.51%), Postives = 38/73 (52.05%), Query Frame = 2
Query:  218 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSNPQSVSF 436
            +A  R+ +E K  +K+ P    A P  +D    +  W+  I G + + + GG F +T++F  DYP  P  V+F
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAED----MFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAF 69          
BLAST of CF417270 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 1.415e-12
Identity = 22/49 (44.90%), Postives = 31/49 (63.27%), Query Frame = 1
Query:  418 PPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 564
            PPK  F    FHPN+  +G++CL IL E   W PA+T+ ++L+ I  LL
Sbjct:   64 PPKVAFRTKVFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLL 110          

HSP 2 Score: 43.5134 bits (101), Expect = 1.415e-12
Identity = 23/73 (31.51%), Postives = 38/73 (52.05%), Query Frame = 2
Query:  218 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSNPQSVSF 436
            +A  R+ +E K  +K+ P    A P  +D    +  W+  I G + + + GG F +T++F  DYP  P  V+F
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAED----MFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAF 69          
BLAST of CF417270 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 1.838e-12
Identity = 22/49 (44.90%), Postives = 31/49 (63.27%), Query Frame = 1
Query:  418 PPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 564
            PPK  F    FHPN+  +G++CL IL E   W PA+T+ ++L+ I  LL
Sbjct:   64 PPKVAFRTKVFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLL 110          

HSP 2 Score: 43.1282 bits (100), Expect = 1.838e-12
Identity = 23/73 (31.51%), Postives = 38/73 (52.05%), Query Frame = 2
Query:  218 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSNPQSVSF 436
            +A  R+ +E K  +K+ P    A P  +D    +  W+  I G T + + GG F ++++F  DYP  P  V+F
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAED----MFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAF 69          
BLAST of CF417270 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 2.387e-12
Identity = 22/49 (44.90%), Postives = 31/49 (63.27%), Query Frame = 1
Query:  418 PPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 564
            PPK  F    FHPN+  +G++CL IL E   W PA+T+ ++L+ I  LL
Sbjct:   64 PPKVAFRTKVFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLL 110          

HSP 2 Score: 42.743 bits (99), Expect = 2.387e-12
Identity = 23/73 (31.51%), Postives = 37/73 (50.68%), Query Frame = 2
Query:  218 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSNPQSVSF 436
            +A  R+ +E K  +K+ P    A P  +D    +  W+  I G   + + GG F +T++F  DYP  P  V+F
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAED----MFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAF 69          
BLAST of CF417270 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 2.387e-12
Identity = 22/49 (44.90%), Postives = 31/49 (63.27%), Query Frame = 1
Query:  418 PPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 564
            PPK  F    FHPN+  +G++CL IL E   W PA+T+ ++L+ I  LL
Sbjct:   64 PPKVAFRTKVFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLL 110          

HSP 2 Score: 42.743 bits (99), Expect = 2.387e-12
Identity = 23/73 (31.51%), Postives = 38/73 (52.05%), Query Frame = 2
Query:  218 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSNPQSVSF 436
            +A  R+ +E K  +K+ P    A P  +D    +  W+  I G + + + GG F +T++F  DYP  P  V+F
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAED----MFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAF 69          
BLAST of CF417270 vs. ExPASy Swiss-Prot
Match: UBC15_SCHPO (Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccharomyces pombe GN=ubc15 PE=2 SV=1)

HSP 1 Score: 46.595 bits (109), Expect = 2.729e-12
Identity = 25/62 (40.32%), Postives = 35/62 (56.45%), Query Frame = 1
Query:  418 PPKCKFPQGFFHPNVYPSGTVCLSILN---------EDNG--WRPAITVKQILVGIQDLLGS 570
            PPK KF    +HPNV+P+G VC+SIL+         ED G  W P  + + IL+ +  +L S
Sbjct:   69 PPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISVISMLSS 130          

HSP 2 Score: 43.8986 bits (102), Expect = 2.729e-12
Identity = 26/69 (37.68%), Postives = 37/69 (53.62%), Query Frame = 2
Query:  233 LTEERKAWRKNHPHGF-VAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSNPQSVSF 436
            L ++ K  +KN P GF V   + K    ++  WE +I G   T +EGG+F  TL F +DYP  P  + F
Sbjct:   10 LRKQLKEIQKNPPQGFSVGLVDDK----SIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPKMKF 74          

HSP 3 Score: 21.1718 bits (43), Expect = 2.729e-12
Identity = 7/18 (38.89%), Postives = 14/18 (77.78%), Query Frame = 3
Query:  615 FIQDPAEYKRRVRQQAKQ 668
            F ++P E+K+RVR+  ++
Sbjct:  145 FRENPQEFKKRVRRLVRR 162          
BLAST of CF417270 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 49.2914 bits (116), Expect = 5.230e-12
Identity = 21/49 (42.86%), Postives = 31/49 (63.27%), Query Frame = 1
Query:  418 PPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 564
            PPK  F    +HPN+  +G++CL IL E   W PA+T+ ++L+ I  LL
Sbjct:   64 PPKVSFKTKVYHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLL 110          

HSP 2 Score: 41.9726 bits (97), Expect = 5.230e-12
Identity = 23/73 (31.51%), Postives = 37/73 (50.68%), Query Frame = 2
Query:  218 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSNPQSVSF 436
            +A  R+ +E K  +K+ P    A P  +D    +  W+  I G   + + GG F ++++F  DYP  P  VSF
Sbjct:    1 MASKRILKELKDLQKDPPSNCSAGPVAED----MFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSF 69          
BLAST of CF417270 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 5.491e-11
Identity = 22/49 (44.90%), Postives = 31/49 (63.27%), Query Frame = 1
Query:  418 PPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 564
            PPK  F    +HPN+  +G++CL IL E   W PA+TV ++L+ I  LL
Sbjct:   64 PPKVAFRTKVYHPNINSNGSICLDILKEQ--WSPALTVSKVLLSICSLL 110          

HSP 2 Score: 38.891 bits (89), Expect = 5.491e-11
Identity = 21/73 (28.77%), Postives = 36/73 (49.32%), Query Frame = 2
Query:  218 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSNPQSVSF 436
            +A  R+ +E +  +++ P    A P   D    +  W+  I G   + + GG F +T++F  DYP  P  V+F
Sbjct:    1 MASKRINKELRDLQRDPPVSCSAGPTGDD----MFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAF 69          
BLAST of CF417270 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 9.273e-11
Identity = 21/49 (42.86%), Postives = 30/49 (61.22%), Query Frame = 1
Query:  418 PPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 564
            PPK  F    +HPN+  +G++CL IL     W PA+TV ++L+ I  LL
Sbjct:   64 PPKVAFTTKIYHPNINSNGSICLDILRSQ--WSPALTVSKVLLSICSLL 110          

HSP 2 Score: 39.2762 bits (90), Expect = 9.273e-11
Identity = 23/73 (31.51%), Postives = 36/73 (49.32%), Query Frame = 2
Query:  218 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSNPQSVSF 436
            +A  R+ +E    +++ P    A P   D    L  W+  I G   + ++GG F LT++F  DYP  P  V+F
Sbjct:    1 MALKRIQKELTDLQRDPPAQCSAGPVGDD----LFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAF 69          
The following BLAST results are available for this feature:
BLAST of CF417270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
UBC28_ARATH1.089e-1246.94Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC9_ARATH1.415e-1244.90SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC4_SOLLC1.838e-1244.90Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC8_ARATH2.387e-1244.90Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC10_ARATH2.387e-1244.90Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC15_SCHPO2.729e-1240.32Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccha... [more]
UBC11_ARATH5.230e-1242.86Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC30_ARATH5.491e-1144.90Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UB2D4_HUMAN9.273e-1142.86Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-200 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417270 ID=CF417270; Name=CF417270; organism=Citrus sinensis; type=EST; length=691bp
GAAATATAGAAGCATGGAAGTTGCGTAAGCTTCAATCTTCCGTTTAAGAA
TATCAGAAGTCAACATCCCGGGCAGCAAGCACGTACACGGTACTCGGTAC
TCGGTACTCGGTACTCGGTACTCATAAGCTTGTTTCTTCTGCAAACAAAC
ATTGATTAATACAGTTAGTTATACAAGCGATCATAATTCAAACGTAAGAG
TCATCATGTCGGGTGGTATTGCTCGCGGCCGTCTCACAGAGGAGCGAAAA
GCCTGGCGCAAGAATCATCCCCACGGTTTTGTGGCCAAGCCTGAAACCAA
AGATGGTTCCGTGAATTTGATGATCTGGGAGTGTATCATTCCTGGCAAGA
CTGGGACTGATTGGGAAGGTGGCTACTTTCCTCTTACTCTCTACTTCAGC
GAAGACTATCCCAGCAACCCCCAAAGTGTAAGTTTCCTCAAGGTTTCTTT
CATCCTAATGTCTACCCTTCTGGAACAGTATGCCTGTCAATCCTCAATGA
GGACAATGGGTGGAGACCTGCCATTACTGTGAAGCAAATTTTAGTGGGCA
TTCAGGATTTGCTGGGATCAACCCAATCCTGCTGATCCAGCACAAACTGA
TGGGATACCAGCTTTTCATCCAGGATCCTGCCGAGTACAAGAGAAGGGTG
CGACAGCAGGCCAAGCAATATCCCCCCTGTTATATAATGCA
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