CF417271

Overview
NameCF417271
Unique NameCF417271
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417271 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.814e-13
Identity = 38/82 (46.34%), Postives = 46/82 (56.10%), Query Frame = 3
Query:  372 R*RRFALFLPTSAARPLVXYGVATGGPLAWGLCYNHEMSPSQSYCDDSYXYTYPCTPGAEYYGRGAIPIYWNYNYGATGEAI 617
            R R  A FL  ++      +  A  GP AWG C+  E +PS +YC  S    +PC PG +YYGRG I I WNYNYG  G AI
Sbjct:  126 RKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPS-AYC--SATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAI 204          
BLAST of CF417271 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.507e-13
Identity = 35/82 (42.68%), Postives = 44/82 (53.66%), Query Frame = 3
Query:  372 R*RRFALFLPTSAARPLVXYGVATGGPLAWGLCYNHEMSPSQSYCDDSYXYTYPCTPGAEYYGRGAIPIYWNYNYGATGEAI 617
            R +  A FL  ++      +  A  GP +WG CYN E      YC  S  +  PC PG +Y+GRG I I +NYNYGA G AI
Sbjct:   56 RNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQW--PCAPGKKYFGRGPIQISYNYNYGAAGSAI 135          
BLAST of CF417271 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12
Identity = 36/83 (43.37%), Postives = 46/83 (55.42%), Query Frame = 3
Query:  372 R*RRFALFLPTSAARPLVXYG-VATGGPLAWGLCYNHEMSPSQSYCDDSYXYTYPCTPGAEYYGRGAIPIYWNYNYGATGEAI 617
            R R  A FL  ++       G  A  GP  WG CYN E++P+  YC   +   YPC PG +Y+GRG + + WNYNYG  G AI
Sbjct:  123 RKREVAAFLAQTSHETTGGAGWAAPDGPYTWGYCYNRELNPAD-YCQ--WDPNYPCAPGKQYFGRGPMQLTWNYNYGQCGRAI 202          
BLAST of CF417271 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12
Identity = 36/80 (45.00%), Postives = 44/80 (55.00%), Query Frame = 3
Query:  378 RRFALFLPTSAARPLVXYGVATGGPLAWGLCYNHEMSPSQSYCDDSYXYTYPCTPGAEYYGRGAIPIYWNYNYGATGEAI 617
            R  A FL  ++      +  A  GP AWG C+  E +PS +YC  S  +  PC  G +YYGRG I I WNYNYG  G AI
Sbjct:  121 REIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLREQNPS-TYCQASSEF--PCASGKQYYGRGPIQISWNYNYGQCGRAI 197          
BLAST of CF417271 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.101e-11
Identity = 33/82 (40.24%), Postives = 45/82 (54.88%), Query Frame = 3
Query:  372 R*RRFALFLPTSAARPLVXYGVATGGPLAWGLCYNHEMSPSQSYCDDSYXYTYPCTPGAEYYGRGAIPIYWNYNYGATGEAI 617
            R R  A FL  ++      +  A  GP +WG C+  E+  + SYC  S  +  PC P  +Y+GRG I + +NYNYG  GEAI
Sbjct:  137 RKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATASYCVPSAEW--PCAPDKKYFGRGPIQLSYNYNYGPAGEAI 216          

HSP 2 Score: 20.7866 bits (42), Expect = 1.101e-11
Identity = 7/24 (29.17%), Postives = 16/24 (66.67%), Query Frame = 1
Query:  607 GKPLRADLLSHPEYIEPNATLAFE 678
            G+ +  DLL++PE +  +  ++F+
Sbjct:  213 GEAIGEDLLNNPELVASDPVVSFK 236          
BLAST of CF417271 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 1.440e-11
Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 3
Query:  468 CYNHEMS-PSQSYCDDSYXYTYPCTPGAEYYGRGAIPIYWNYNYGATGEAI 617
            CY  E+  PS++YCD++    +PC  G  YYGRG + I WN+NYG  G++I
Sbjct:  137 CYIEEIDGPSKNYCDETSTQ-WPCMAGKGYYGRGPLQISWNFNYGPAGQSI 186          

HSP 2 Score: 34.2686 bits (77), Expect = 1.440e-11
Identity = 19/46 (41.30%), Postives = 25/46 (54.35%), Query Frame = 2
Query:  281 AVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKT 418
            A GF+   +F+TA   Y    FG TG+  D  +EI AF AH   +T
Sbjct:   90 AKGFYTRDAFLTAAGGYP--SFGRTGSVDDSKREIAAFFAHANHET 133          
BLAST of CF417271 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 35/82 (42.68%), Postives = 43/82 (52.44%), Query Frame = 3
Query:  372 R*RRFALFLPTSAARPLVXYGVATGGPLAWGLCYNHEMSPSQSYCDDSYXYTYPCTPGAEYYGRGAIPIYWNYNYGATGEAI 617
            R R  A FL  ++      +  A  GP AWG CY  E     +YC  S  +  PC  G +YYGRG I I +NYNYG  G+AI
Sbjct:  116 RKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYCVPSAQW--PCAAGRKYYGRGPIQISYNYNYGQAGKAI 195          
BLAST of CF417271 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 33/80 (41.25%), Postives = 39/80 (48.75%), Query Frame = 3
Query:  378 RRFALFLPTSAARPLVXYGVATGGPLAWGLCYNHEMSPSQSYCDDSYXYTYPCTPGAEYYGRGAIPIYWNYNYGATGEAI 617
            R  A FL  ++      +  A  G  AWG C+  E   S  YC  S  +  PC PG  YYGRG I +  NYNYG  G AI
Sbjct:   78 REVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQW--PCAPGKRYYGRGPIQLSHNYNYGPAGRAI 155          
BLAST of CF417271 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 5.300e-11
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 3
Query:  465 LCYNHEMS-PSQSYCDDSYXYTYPCTPGAEYYGRGAIPIYWNYNYGATGEAI 617
            +CY +E++  S  YCD +    +PC PG +YYGRG + I WNYNYG  G+ I
Sbjct:  155 MCYINEINGASMDYCDKNNKQ-WPCQPGKKYYGRGPLQISWNYNYGPAGQNI 205          

HSP 2 Score: 31.187 bits (69), Expect = 5.300e-11
Identity = 18/43 (41.86%), Postives = 22/43 (51.16%), Query Frame = 2
Query:  290 FWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKT 418
            F+  QSF+ A   Y   GF    T  D  +EI AF AHV  +T
Sbjct:  112 FYTRQSFLNAAHSYS--GFARDRTNDDSKREIAAFFAHVTHET 152          
BLAST of CF417271 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 31/81 (38.27%), Postives = 43/81 (53.09%), Query Frame = 3
Query:  378 RRFALFLPTSAARPLVXYGVATGGPLAWGLCYNHEMSPSQSYCDDSYXYTYPCTPGAEYYGRGAIPIYWNYNYGATGEAIE 620
            +  A FL  ++      +  A  GP AWG C+  E +  + YC       +PC PG +YYGRG I +  NYNYG  G+AI+
Sbjct:  133 KELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSPK---DWPCAPGKKYYGRGPIQLTHNYNYGLAGQAIK 210          
The following BLAST results are available for this feature:
BLAST of CF417271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
CHI5_PHAVU3.814e-1346.34Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHID_SOLLC6.507e-1342.68Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI1_THECC1.893e-1243.37Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI2_PEA3.229e-1245.00Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI9_ORYSJ1.101e-1140.24Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI6_ORYSJ1.440e-1147.06Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_VITVI3.570e-1142.68Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI2_HORVU4.663e-1141.2526 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI5_ORYSJ5.300e-1148.08Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIX_PEA6.090e-1138.27Endochitinase OS=Pisum sativum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-201 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417271 ID=CF417271; Name=CF417271; organism=Citrus sinensis; type=EST; length=682bp
AACAGGTAGATCTGGTGAGAACGAGAAAATAAAGATGAAGAATGGCAGTG
TGGCAATGACACTGACAGTGGCACTAGTACTGGCACTGGCAGTGAGTTTG
GCAAATGGAGATGAATCAGAGAAGGTGATAGTGAAGAAGGTGAAGGGGAA
AAAAGTTTGCATAAAAGGGTGGGAGTGCCCAACATGGTCGAAATTCTGCT
GTAACGAGACGATATCAGACTATTTCCAGGTTTACCAGTTTGAGAATTTC
TTCTCGAAAAGGAACACGCCGGTGGCACATGCCGTGGGCTTCTGGGATTA
TCAGTCTTTCATTACTGCCACCGTCAAATATCAGCCCCTCGGCTTCGGTA
CCACCGGTACTAAGCTTGATAAGATGAAGGAGATTTGCGCTTTTCTTGCC
CACGTCGGCTGCAAGACCTCTTGTGGNATATGGGGTGGCCACTGGAGGAC
CATTGGCCTGGGGACTTTGCTACAACCATGAAATGAGCCCCAGTCAGTCA
TATTGTGATGATTCCTACNAATACACATATCCCTGCACCCCTGGAGCTGA
GTACTACGGCCGAGGTGCTATACCTATATACTGGAACTATAACTATGGAG
CTACTGGGGAAGCCATTGAGGGCGGATCTGTTGAGTCATCCTGAATACAT
TGAGCCGAATGCTACCCTTGCCTTTGAGGCTG
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