CF417271

Overview
NameCF417271
Unique NameCF417271
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417271 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 33/82 (40.24%), Postives = 41/82 (50.00%), Query Frame = 3
Query:  372 R*RRFALFLPTSAARPLVXYGVATGGPLAWGLCYNHEMSPSQSYCDDSYXYTYPCTPGAEYYGRGAIPIYWNYNYGATGEAI 617
            R R  A FL  ++      +  A  G  AWG C+  E   + +YC  S  +  PC PG  YYGRG I +  NYNYG  G AI
Sbjct:  131 RKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQW--PCAPGKSYYGRGPIQLSHNYNYGPAGRAI 210          
BLAST of CF417271 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 33/82 (40.24%), Postives = 41/82 (50.00%), Query Frame = 3
Query:  372 R*RRFALFLPTSAARPLVXYGVATGGPLAWGLCYNHEMSPSQSYCDDSYXYTYPCTPGAEYYGRGAIPIYWNYNYGATGEAI 617
            R R  A FL  ++      +  A  G  AWG C+  E   + +YC  S  +  PC PG  YYGRG I +  NYNYG  G AI
Sbjct:  128 RKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQW--PCAPGKSYYGRGPIQLSHNYNYGPAGRAI 207          
BLAST of CF417271 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 6.885e-11
Identity = 25/50 (50.00%), Postives = 31/50 (62.00%), Query Frame = 3
Query:  468 CYNHEMSPSQSYCDDSYXYTYPCTPGAEYYGRGAIPIYWNYNYGATGEAI 617
            CY  E++ S +YCD S    +PC  G +YYGRG + I WNYNYG  G  I
Sbjct:  149 CYISEINKSNAYCDASNRQ-WPCAAGQKYYGRGPLQISWNYNYGPAGRDI 197          

HSP 2 Score: 30.0314 bits (66), Expect = 6.885e-11
Identity = 16/43 (37.21%), Postives = 25/43 (58.14%), Query Frame = 2
Query:  290 FWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKT 418
            F+   +F++A   Y   GF   GT+++  +EI AF AHV  +T
Sbjct:  105 FYTRSAFLSAVNAYP--GFAHGGTEVEGKREIAAFFAHVTHET 145          
BLAST of CF417271 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 35/82 (42.68%), Postives = 41/82 (50.00%), Query Frame = 3
Query:  372 R*RRFALFLPTSAARPLVXYGVATGGPLAWGLCYNHEMSPSQSYCDDSYXYTYPCTPGAEYYGRGAIPIYWNYNYGATGEAI 617
            R R  A F   ++      +  A  G  AWG CY  E     SYC  S  +  PC PG +YYGRG I I +NYNYG  G AI
Sbjct:  136 RKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPSYCVQSSQW--PCAPGQKYYGRGPIQISYNYNYGPCGRAI 215          
BLAST of CF417271 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 8.897e-11
Identity = 29/79 (36.71%), Postives = 40/79 (50.63%), Query Frame = 3
Query:  372 R*RRFALFLPTSAARPLVXYGVATGGPLAWGLCYNHEMSPSQSYCDDSYXYTYPCTPGAEYYGRGAIPIYWNYNYGATG 608
            R R  A F   ++        +    P  WG C  +E++P+  YCD     +YPC   A+YYGRG + + WNYNYG  G
Sbjct:  114 RKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCV--ADYYGRGPLQLRWNYNYGECG 190          

HSP 2 Score: 21.557 bits (44), Expect = 8.897e-11
Identity = 10/25 (40.00%), Postives = 14/25 (56.00%), Query Frame = 1
Query:  607 GKPLRADLLSHPEYIEPNATLAFEA 681
            G  L  +LL  PE +  +  L+FEA
Sbjct:  190 GNYLGQNLLDEPEKVATDPVLSFEA 214          
The following BLAST results are available for this feature:
BLAST of CF417271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
CHIA_SECCE6.090e-1140.24Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI1_HORVU6.090e-1140.2426 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIA_MAIZE6.885e-1150.00Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI3_TOBAC7.954e-1142.68Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI8_POPTR8.897e-1136.71Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-201 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417271 ID=CF417271; Name=CF417271; organism=Citrus sinensis; type=EST; length=682bp
AACAGGTAGATCTGGTGAGAACGAGAAAATAAAGATGAAGAATGGCAGTG
TGGCAATGACACTGACAGTGGCACTAGTACTGGCACTGGCAGTGAGTTTG
GCAAATGGAGATGAATCAGAGAAGGTGATAGTGAAGAAGGTGAAGGGGAA
AAAAGTTTGCATAAAAGGGTGGGAGTGCCCAACATGGTCGAAATTCTGCT
GTAACGAGACGATATCAGACTATTTCCAGGTTTACCAGTTTGAGAATTTC
TTCTCGAAAAGGAACACGCCGGTGGCACATGCCGTGGGCTTCTGGGATTA
TCAGTCTTTCATTACTGCCACCGTCAAATATCAGCCCCTCGGCTTCGGTA
CCACCGGTACTAAGCTTGATAAGATGAAGGAGATTTGCGCTTTTCTTGCC
CACGTCGGCTGCAAGACCTCTTGTGGNATATGGGGTGGCCACTGGAGGAC
CATTGGCCTGGGGACTTTGCTACAACCATGAAATGAGCCCCAGTCAGTCA
TATTGTGATGATTCCTACNAATACACATATCCCTGCACCCCTGGAGCTGA
GTACTACGGCCGAGGTGCTATACCTATATACTGGAACTATAACTATGGAG
CTACTGGGGAAGCCATTGAGGGCGGATCTGTTGAGTCATCCTGAATACAT
TGAGCCGAATGCTACCCTTGCCTTTGAGGCTG
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