CF417274

Overview
NameCF417274
Unique NameCF417274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length527
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417274 vs. ExPASy Swiss-Prot
Match: MDH_SHEB2 (Malate dehydrogenase OS=Shewanella baltica (strain OS223) GN=mdh PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.110e-27
Identity = 67/117 (57.26%), Postives = 81/117 (69.23%), Query Frame = 2
Query:  182 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFNINAGIV+ L E +A  CP A+V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSHLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGEDPTP-ALVGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAATCPTALVGII 117          
BLAST of CF417274 vs. ExPASy Swiss-Prot
Match: MDH_PECCP (Malate dehydrogenase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=mdh PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.110e-27
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 2
Query:  182 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++G+ G+   + AL G DIV+I AGV RKPGM R DLFN+NAGIV+ L E IA  CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGYSGEDA-KPALAGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIAVTCPKACIGII 117          
BLAST of CF417274 vs. ExPASy Swiss-Prot
Match: MDH_ECOLU (Malate dehydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.110e-27
Identity = 66/117 (56.41%), Postives = 82/117 (70.09%), Query Frame = 2
Query:  182 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G ++V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGANVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117          
BLAST of CF417274 vs. ExPASy Swiss-Prot
Match: MDH_HAEIN (Malate dehydrogenase OS=Haemophilus influenzae GN=mdh PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.756e-27
Identity = 68/117 (58.12%), Postives = 82/117 (70.09%), Query Frame = 2
Query:  182 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KVAVLGAAGGIGQ LA+L+K+  P  + L LYD+   TPGV  D+SH+ T   V+GF G+     AL G D+V+I AGV RKPGM R DLFNINAGIV+ L E +A  CPKA V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKLQLPAGTDLSLYDIAPVTPGVAVDVSHIPTAVNVKGFSGEDPTP-ALEGADVVLISAGVARKPGMDRSDLFNINAGIVRGLIEKVAVTCPKACVGII 117          
BLAST of CF417274 vs. ExPASy Swiss-Prot
Match: MDH_ERWT9 (Malate dehydrogenase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=mdh PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.756e-27
Identity = 65/117 (55.56%), Postives = 81/117 (69.23%), Query Frame = 2
Query:  182 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KV VLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T+  + GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L E +A  CPKA++ +I
Sbjct:    2 KVTVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTSVKIAGFSGEDATP-ALKGADVVLISAGVARKPGMDRSDLFNVNAGIVRNLIEQVAATCPKALIGII 117          
BLAST of CF417274 vs. ExPASy Swiss-Prot
Match: MDH_ERWCT (Malate dehydrogenase OS=Erwinia carotovora subsp. atroseptica GN=mdh PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.756e-27
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 2
Query:  182 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++G+ G+   + AL G DIV+I AGV RKPGM R DLFN+NAGIV+ L E IA  CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGYSGEDA-KPALAGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIAITCPKACIGII 117          
BLAST of CF417274 vs. ExPASy Swiss-Prot
Match: MDH_VIBMA (Malate dehydrogenase OS=Vibrio marinus GN=mdh PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.600e-27
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 2
Query:  182 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T+  + GF G     DAL G D+V+I AGV RKPGM R DLFNINAGI+K L    A+ CP A + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSDLSLYDIAPVTPGVAVDLSHIPTDVTIAGFAGMDPT-DALVGADVVLISAGVARKPGMDRSDLFNINAGIIKNLAGKCAEVCPNACIGII 117          
BLAST of CF417274 vs. ExPASy Swiss-Prot
Match: MDH_MORS5 (Malate dehydrogenase OS=Moritella sp. (strain 5710) GN=mdh PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.600e-27
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 2
Query:  182 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T+  + GF G     DAL G D+V+I AGV RKPGM R DLFNINAGI+K L    A+ CP A + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSDLSLYDIAPVTPGVAVDLSHIPTDVTIAGFAGMDPT-DALVGADVVLISAGVARKPGMDRSDLFNINAGIIKNLAGKCAEVCPNACIGII 117          
BLAST of CF417274 vs. ExPASy Swiss-Prot
Match: MDH_MORJA (Malate dehydrogenase OS=Moritella japonica GN=mdh PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.600e-27
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 2
Query:  182 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T+  + GF G     DAL G D+V+I AGV RKPGM R DLFNINAGI+K L    A+ CP A + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAAVTPGVAVDLSHIPTDVTIAGFAGTDPT-DALVGADVVLISAGVARKPGMDRSDLFNINAGIIKNLAGKCAEVCPNACIGII 117          
BLAST of CF417274 vs. ExPASy Swiss-Prot
Match: MDH_HAEIE (Malate dehydrogenase OS=Haemophilus influenzae (strain PittEE) GN=mdh PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.600e-27
Identity = 68/117 (58.12%), Postives = 82/117 (70.09%), Query Frame = 2
Query:  182 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KVAVLGAAGGIGQ LA+L+K+  P  + L LYD+   TPGV  D+SH+ T   V+GF G+     AL G D+V+I AGV RKPGM R DLFNINAGIV+ L E +A  CPKA V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKLQLPAGTDLALYDIAPVTPGVAVDVSHIPTAVNVKGFSGEDPTP-ALEGADVVLISAGVARKPGMDRSDLFNINAGIVRGLIEKVAVTCPKACVGII 117          
The following BLAST results are available for this feature:
BLAST of CF417274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
MDH_SHEB22.110e-2757.26Malate dehydrogenase OS=Shewanella baltica (strain... [more]
MDH_PECCP2.110e-2757.26Malate dehydrogenase OS=Pectobacterium carotovorum... [more]
MDH_ECOLU2.110e-2756.41Malate dehydrogenase OS=Escherichia coli O17:K52:H... [more]
MDH_HAEIN2.756e-2758.12Malate dehydrogenase OS=Haemophilus influenzae GN=... [more]
MDH_ERWT92.756e-2755.56Malate dehydrogenase OS=Erwinia tasmaniensis (stra... [more]
MDH_ERWCT2.756e-2757.26Malate dehydrogenase OS=Erwinia carotovora subsp. ... [more]
MDH_VIBMA3.600e-2756.41Malate dehydrogenase OS=Vibrio marinus GN=mdh PE=3... [more]
MDH_MORS53.600e-2756.41Malate dehydrogenase OS=Moritella sp. (strain 5710... [more]
MDH_MORJA3.600e-2756.41Malate dehydrogenase OS=Moritella japonica GN=mdh ... [more]
MDH_HAEIE3.600e-2758.12Malate dehydrogenase OS=Haemophilus influenzae (st... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-204 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417274 ID=CF417274; Name=CF417274; organism=Citrus sinensis; type=EST; length=527bp
GTTTGTTTTATCACAACTAAGTCTCCAGAAACTCAGAACCATGCAGCAGC
CAACTTCAGGAGCAAATCAACGCATTGCGAGAATCGCTGCTCATCTCCAT
CCACCAACTCTCCAGATAGAGGGAGAGAGTTCGGGTTTGGGGCGGATGGA
TTGCAGGGCAAAAGGCGGGTCGCCCGGATTCAAGGTGGCTGTATTGGGAG
CTGCTGGAGGGATTGGACAGCCTCTGGCTATGTTGATGAAGATCAATCCC
TTGGTTTCAGTTCTTCATCTTTATGATGTTGTCAATACTCCTGGGGTTAC
TGCCGATATCAGTCACATGGATACAAATGCTGTGGTACGAGGATTTTTGG
GGCAACAGCAATTGGAGGATGCCCTCACGGGCATGGACATTGTAATCATT
CCCGCTGGTGTTCCTAGGAAACCTGGAATGACTAGGGATGATCTGTTCAA
TATCAATGCCGGAATTGTTAAGACCCTTTGTGAAGGAATAGCTAAGTGCT
GTCCAAAAGCTATTGTGAACTTGATTA
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