CF417274

Overview
NameCF417274
Unique NameCF417274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length527
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9651 contig Csv1_Contig9651:127..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417274 vs. ExPASy Swiss-Prot
Match: MDH_ECO57 (Malate dehydrogenase OS=Escherichia coli O157:H7 GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.554e-28
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:  182 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of CF417274 vs. ExPASy Swiss-Prot
Match: MDH_ECO55 (Malate dehydrogenase OS=Escherichia coli (strain 55989 / EAEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.554e-28
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:  182 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of CF417274 vs. ExPASy Swiss-Prot
Match: MDH_ECO45 (Malate dehydrogenase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.554e-28
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:  182 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of CF417274 vs. ExPASy Swiss-Prot
Match: MDH_ECO27 (Malate dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.554e-28
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:  182 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of CF417274 vs. ExPASy Swiss-Prot
Match: MDH_ECO24 (Malate dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.554e-28
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:  182 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of CF417274 vs. ExPASy Swiss-Prot
Match: MDH_PHOLL (Malate dehydrogenase OS=Photorhabdus luminescens subsp. laumondii GN=mdh PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.253e-28
Identity = 66/117 (56.41%), Postives = 83/117 (70.94%), Query Frame = 2 
Query:  182 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G ++V+I AGV RKPGM R DLFNINAGIV+ L E +AK CPK+++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTEVKIKGFAGEDATP-ALEGANVVLISAGVARKPGMDRSDLFNINAGIVRNLVEQVAKTCPKSLIGII 117
[Close]
BLAST of CF417274 vs. ExPASy Swiss-Prot
Match: MDH_KLEP3 (Malate dehydrogenase OS=Klebsiella pneumoniae (strain 342) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.253e-28
Identity = 67/117 (57.26%), Postives = 83/117 (70.94%), Query Frame = 2 
Query:  182 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T+  ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + IAK CP+A + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTDVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPQACIGVI 117
[Close]
BLAST of CF417274 vs. ExPASy Swiss-Prot
Match: MDH_ENTS8 (Malate dehydrogenase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.253e-28
Identity = 66/117 (56.41%), Postives = 83/117 (70.94%), Query Frame = 2 
Query:  182 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T+  ++GF G+   + AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +A  CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTDVKIKGFSGEDA-KPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLIQQVATTCPKACIGII 117
[Close]
BLAST of CF417274 vs. ExPASy Swiss-Prot
Match: MDH_ENT38 (Malate dehydrogenase OS=Enterobacter sp. (strain 638) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.253e-28
Identity = 68/117 (58.12%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:  182 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + IA+ CPKA V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGENA-RPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAETCPKACVGII 117
[Close]
BLAST of CF417274 vs. ExPASy Swiss-Prot
Match: MDH_SHIFL (Malate dehydrogenase OS=Shigella flexneri GN=mdh PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 9.473e-28
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:  182 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKNCPKACIGII 117
The following BLAST results are available for this feature:
BLAST of CF417274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
MDH_ECO575.554e-2857.26Malate dehydrogenase OS=Escherichia coli O157:H7 G... [more]
MDH_ECO555.554e-2857.26Malate dehydrogenase OS=Escherichia coli (strain 5... [more]
MDH_ECO455.554e-2857.26Malate dehydrogenase OS=Escherichia coli O45:K1 (s... [more]
MDH_ECO275.554e-2857.26Malate dehydrogenase OS=Escherichia coli O127:H6 (... [more]
MDH_ECO245.554e-2857.26Malate dehydrogenase OS=Escherichia coli O139:H28 ... [more]
MDH_PHOLL7.253e-2856.41Malate dehydrogenase OS=Photorhabdus luminescens s... [more]
MDH_KLEP37.253e-2857.26Malate dehydrogenase OS=Klebsiella pneumoniae (str... [more]
MDH_ENTS87.253e-2856.41Malate dehydrogenase OS=Enterobacter sakazakii (st... [more]
MDH_ENT387.253e-2858.12Malate dehydrogenase OS=Enterobacter sp. (strain 6... [more]
MDH_SHIFL9.473e-2857.26Malate dehydrogenase OS=Shigella flexneri GN=mdh P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-204 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417274 ID=CF417274; Name=CF417274; organism=Citrus sinensis; type=EST; length=527bp
GTTTGTTTTATCACAACTAAGTCTCCAGAAACTCAGAACCATGCAGCAGC
CAACTTCAGGAGCAAATCAACGCATTGCGAGAATCGCTGCTCATCTCCAT
CCACCAACTCTCCAGATAGAGGGAGAGAGTTCGGGTTTGGGGCGGATGGA
TTGCAGGGCAAAAGGCGGGTCGCCCGGATTCAAGGTGGCTGTATTGGGAG
CTGCTGGAGGGATTGGACAGCCTCTGGCTATGTTGATGAAGATCAATCCC
TTGGTTTCAGTTCTTCATCTTTATGATGTTGTCAATACTCCTGGGGTTAC
TGCCGATATCAGTCACATGGATACAAATGCTGTGGTACGAGGATTTTTGG
GGCAACAGCAATTGGAGGATGCCCTCACGGGCATGGACATTGTAATCATT
CCCGCTGGTGTTCCTAGGAAACCTGGAATGACTAGGGATGATCTGTTCAA
TATCAATGCCGGAATTGTTAAGACCCTTTGTGAAGGAATAGCTAAGTGCT
GTCCAAAAGCTATTGTGAACTTGATTA
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