CF417291

Overview
NameCF417291
Unique NameCF417291
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA2_SOYBN (Glutamine synthetase cytosolic isozyme 2 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 348.977 bits (894), Expect = 1.131e-95
Identity = 164/201 (81.59%), Postives = 175/201 (87.06%), Query Frame = 3 
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            PKWNYDGSSTGQAPG+DSEVILYPQAIFKDPFRRG+NILVMCDAYTPAGEPIPTNKR+ AAKIF H DV AEEPWYG+EQEYTLLQKDV+WPL                   A+KA+GRDIVDSHYKAC+YAGINISGINGEVMPGQWEFQVGP++GISA D+LWVARYILERITEIAGVVLSFDP PIQGDWNGAGAH N
Sbjct:   51 PKWNYDGSSTGQAPGQDSEVILYPQAIFKDPFRRGSNILVMCDAYTPAGEPIPTNKRNNAAKIFGHPDVAAEEPWYGLEQEYTLLQKDVQWPLGWPLGGFPGPQGPYYCGTGANKAFGRDIVDSHYKACIYAGINISGINGEVMPGQWEFQVGPSIGISAADELWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHTN 251
[Close]
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA1_PEA (Glutamine synthetase nodule isozyme OS=Pisum sativum GN=GS1 PE=2 SV=2)

HSP 1 Score: 348.977 bits (894), Expect = 1.131e-95
Identity = 161/201 (80.10%), Postives = 177/201 (88.06%), Query Frame = 3 
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            PKWNYDGSSTGQAPG+DSEVILYPQAIFKDPFRRGN+ILVMCDAY+PAGEPIPTNKRHAAAK+FSH DVVAEE WYGIEQEYTLLQKD+ WPL                   ADKA+GRD+V++HYKACL+AGINISGINGEVMPGQWEFQVGP+VGISAGD++WVARYILERITE+AGVVL+FDP PI+GDWNGAGAH N
Sbjct:   50 PKWNYDGSSTGQAPGQDSEVILYPQAIFKDPFRRGNHILVMCDAYSPAGEPIPTNKRHAAAKVFSHPDVVAEETWYGIEQEYTLLQKDINWPLGWPAGGYPGPQGPYYCSVGADKAFGRDVVEAHYKACLFAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWVARYILERITEVAGVVLTFDPKPIKGDWNGAGAHTN 250
[Close]
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLN11_ORYSJ (Glutamine synthetase cytosolic isozyme 1-1 OS=Oryza sativa subsp. japonica GN=GLN1-1 PE=1 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 1.929e-95
Identity = 164/201 (81.59%), Postives = 173/201 (86.07%), Query Frame = 3 
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR+GNNILVMCD YTPAGEPIPTNKRH AAKIFS  +V +EEPWYGIEQEYTLLQKD+ WPL                   ADK++GRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP+VGISAGDQ+WVARYILERITEIAGVV+SFDP PI GDWNGAGAH N
Sbjct:   51 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRKGNNILVMCDCYTPAGEPIPTNKRHNAAKIFSSPEVASEEPWYGIEQEYTLLQKDINWPLGWPVGGFPGPQGPYYCGIGADKSFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDQVWVARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTN 251
[Close]
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLN12_ORYSJ (Glutamine synthetase cytosolic isozyme 1-2 OS=Oryza sativa subsp. japonica GN=GLN1-2 PE=1 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 2.786e-94
Identity = 161/201 (80.10%), Postives = 172/201 (85.57%), Query Frame = 3 
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRG+NILVMCD YTP GEPIPTNKRH+AAKIFSH DVVAE PWYGIEQEYTLLQKDV WPL                   A+KA+GRDIVD+HYKAC+YAGINISGINGEVMPGQWEFQVGP+VGI+A DQ+WVARYILER+TE+AGVVLS DP PI GDWNGAGAH N
Sbjct:   51 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGDNILVMCDCYTPQGEPIPTNKRHSAAKIFSHPDVVAEVPWYGIEQEYTLLQKDVNWPLGWPVGGFPGPQGPYYCAAGAEKAFGRDIVDAHYKACIYAGINISGINGEVMPGQWEFQVGPSVGIAAADQVWVARYILERVTEVAGVVLSLDPKPIPGDWNGAGAHTN 251
[Close]
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA1_MAIZE (Glutamine synthetase root isozyme 1 OS=Zea mays GN=GLN6 PE=2 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 4.752e-94
Identity = 159/201 (79.10%), Postives = 173/201 (86.07%), Query Frame = 3 
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR+GN+ILVMCD YTP GEPIPTNKR++AAK+FSH DV AE PWYGIEQEYTLLQKDV WPL                   ADKA+GRD+VD+HYKACLYAGINISGINGEVMPGQWEFQVGP+VGISAGD++WVARYILERITE+AG+VLS DP PI+GDWNGAGAH N
Sbjct:   51 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRKGNHILVMCDCYTPQGEPIPTNKRYSAAKVFSHPDVAAEVPWYGIEQEYTLLQKDVSWPLGWPVGGYPGPQGPYYCAAGADKAFGRDVVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWVARYILERITEMAGIVLSLDPKPIKGDWNGAGAHTN 251
[Close]
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA4_MAIZE (Glutamine synthetase root isozyme 4 OS=Zea mays GN=GLN5 PE=2 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 6.206e-94
Identity = 161/201 (80.10%), Postives = 173/201 (86.07%), Query Frame = 3 
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCD YTPAGEPIPTNKR++AAKIFS  +V AEEPWYGIEQEYTLLQKD  WPL                   A+K++GRDIVD+HYKACLYAGINISGINGEVMPGQWEFQVGP+VGIS+GDQ+WVARYILERITEIAGVV++FDP PI GDWNGAGAH N
Sbjct:   51 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIFSSPEVAAEEPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIPGDWNGAGAHTN 251
[Close]
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA3_LUPAN (Glutamine synthetase nodule isozyme (Fragment) OS=Lupinus angustifolius PE=2 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 6.206e-94
Identity = 160/201 (79.60%), Postives = 173/201 (86.07%), Query Frame = 3 
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            PKWNYDGSSTGQAPG+DSEVIL+PQAIFKDPFRRGNNILV+CD YTP+G+PIPTNKRHAAAKIFSH DV AEEPW+GIEQEYTLLQKD+ WP+                   A+KA+GRDIVDSHYKACLYAGINISGIN EVMPGQWEFQVGP++GISAGD+LWVARYILERITEIAGVVLS DP PI GDWNGAGAH N
Sbjct:   51 PKWNYDGSSTGQAPGKDSEVILWPQAIFKDPFRRGNNILVICDTYTPSGKPIPTNKRHAAAKIFSHPDVAAEEPWFGIEQEYTLLQKDIHWPIGMALGGFPGPQGPYYCGTGAEKAFGRDIVDSHYKACLYAGINISGINAEVMPGQWEFQVGPSIGISAGDELWVARYILERITEIAGVVLSLDPKPIPGDWNGAGAHTN 251
[Close]
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLN12_ARATH (Glutamine synthetase cytosolic isozyme 1-2 OS=Arabidopsis thaliana GN=GLN1-2 PE=1 SV=2)

HSP 1 Score: 343.199 bits (879), Expect = 6.206e-94
Identity = 161/201 (80.10%), Postives = 174/201 (86.57%), Query Frame = 3 
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            PKWNYDGSSTGQAPG+DSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAA+IF++ DV+AE PWYGIEQEYTLLQKDV WPL                   ADK++GRDIVD+HYKA LYAGINISGINGEVMPGQWEFQVGP+VGISA D++W+ARYILERITEIAGVV+SFDP PI GDWNGAGAH N
Sbjct:   51 PKWNYDGSSTGQAPGQDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAEIFANPDVIAEVPWYGIEQEYTLLQKDVNWPLGWPIGGFPGPQGPYYCSIGADKSFGRDIVDAHYKASLYAGINISGINGEVMPGQWEFQVGPSVGISAADEIWIARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTN 251
[Close]
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA1_ALNGL (Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE=2 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 8.106e-94
Identity = 162/201 (80.60%), Postives = 169/201 (84.08%), Query Frame = 3 
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            PKWNYDGSSTGQAPGEDSEVI   +  FKDPFRRGNNILV+CD YTPAGEPIPTNKRH AAKIFSH +VVAE PWYGIEQEYTLLQKDVKWPL                   ADKAWGRDIVD+HYKACLYAGINISGINGEVMPGQWEFQVGP+VGISAGD++W ARYILERITEIAGVVLS DP PIQGDWNGAGAH N
Sbjct:   51 PKWNYDGSSTGQAPGEDSEVIYILRQFFKDPFRRGNNILVICDTYTPAGEPIPTNKRHGAAKIFSHPEVVAEVPWYGIEQEYTLLQKDVKWPLGWPVGGYPGPQGPYYCGIGADKAWGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEVWAARYILERITEIAGVVLSLDPKPIQGDWNGAGAHTN 251
[Close]
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA3_PEA (Glutamine synthetase root isozyme A OS=Pisum sativum GN=GS3A PE=2 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 1.059e-93
Identity = 160/201 (79.60%), Postives = 172/201 (85.57%), Query Frame = 3 
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            PKWNYDGSST QAPG+DSEVILYPQAIFKDPFRRGNNILV+CD YTPAGEP+PTNKR+ AAKIFSH DV AE PWYGIEQEYTLLQKD+ WPL                   ADKA+GRDIVD+HYKACL+AGINISGINGEVMPGQWEFQVGP+VGISAGD++W ARYILERITEIAGVV+SFDP PI GDWNGAGAHAN
Sbjct:   51 PKWNYDGSSTNQAPGKDSEVILYPQAIFKDPFRRGNNILVICDVYTPAGEPLPTNKRYNAAKIFSHPDVAAEVPWYGIEQEYTLLQKDINWPLGWPIGGYPGKQGPYYCGIGADKAYGRDIVDAHYKACLFAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWAARYILERITEIAGVVVSFDPKPIPGDWNGAGAHAN 251
The following BLAST results are available for this feature:
BLAST of CF417291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA2_SOYBN1.131e-9581.59Glutamine synthetase cytosolic isozyme 2 OS=Glycin... [more]
GLNA1_PEA1.131e-9580.10Glutamine synthetase nodule isozyme OS=Pisum sativ... [more]
GLN11_ORYSJ1.929e-9581.59Glutamine synthetase cytosolic isozyme 1-1 OS=Oryz... [more]
GLN12_ORYSJ2.786e-9480.10Glutamine synthetase cytosolic isozyme 1-2 OS=Oryz... [more]
GLNA1_MAIZE4.752e-9479.10Glutamine synthetase root isozyme 1 OS=Zea mays GN... [more]
GLNA4_MAIZE6.206e-9480.10Glutamine synthetase root isozyme 4 OS=Zea mays GN... [more]
GLNA3_LUPAN6.206e-9479.60Glutamine synthetase nodule isozyme (Fragment) OS=... [more]
GLN12_ARATH6.206e-9480.10Glutamine synthetase cytosolic isozyme 1-2 OS=Arab... [more]
GLNA1_ALNGL8.106e-9480.60Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE... [more]
GLNA3_PEA1.059e-9379.60Glutamine synthetase root isozyme A OS=Pisum sativ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-221 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417291 ID=CF417291; Name=CF417291; organism=Citrus sinensis; type=EST; length=619bp
TGCCTAAGTGGAATTATGATGGTTCCAGCACAGGCCAAGCACCTGGAGAA
GATAGTGAAGTGATCCTCTATCCTCAAGCTATTTTCAAGGATCCATTCAG
GAGAGGCAACAATATTCTTGTTATGTGTGATGCTTACACTCCTGCGGGGG
AACCAATTCCAACAAACAAAAGACATGCAGCTGCCAAGATTTTCAGCCAT
TCTGACGTTGTGGCTGAAGAACCATGGTATGGTATTGAGCAGGAATACAC
CTTACTGCAGAAGGATGTTAAATGGCCTCTTGGCTGGCCCATCGGTGGTT
ATCCTGGGCCTCAGGGACCATACTACTGTGGTGTTGGTGCTGACAAAGCT
TGGGGGCGCGACATTGTAGACTCCCATTACAAGGCCTGTCTATATGCAGG
AATCAACATCAGTGGCATCAATGGAGAAGTCATGCCGGGGCAGTGGGAGT
TCCAAGTTGGTCCCGCTGTTGGAATTTCTGCTGGAGATCAGTTGTGGGTT
GCCCGCTATATTTTAGAGAGGATTACAGAGATTGCTGGAGTTGTGCTTTC
TTTCGATCCCNAGCCAATTCAGGGTGACTGGAATGGAGCTGGTGCTCACG
CAAATTTACAGCACCAAGT
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