CF417291

Overview
NameCF417291
Unique NameCF417291
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA3_MEDSA (Glutamine synthetase nodule isozyme OS=Medicago sativa GN=GS1 PE=2 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 1.059e-93
Identity = 160/201 (79.60%), Postives = 170/201 (84.58%), Query Frame = 3 
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            PKWNYDGSST QAPG+DSEVILYPQAIFKDPFR+GNNILV+CD YTPAGEP+PTNKRH AAKIFSH DV AE PWYGIEQEYTLLQKD  WPL                   ADKA+GRDIVD+HYKACLYAGINISGINGEVMPGQWEFQVGP+VGISAGD++W ARYILERITEIAGVV+SFDP PI GDWNGAGAH N
Sbjct:   51 PKWNYDGSSTNQAPGQDSEVILYPQAIFKDPFRQGNNILVICDVYTPAGEPLPTNKRHNAAKIFSHPDVAAEVPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGADKAYGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWAARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTN 251
[Close]
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLN14_ARATH (Glutamine synthetase cytosolic isozyme 1-4 OS=Arabidopsis thaliana GN=GLN1-4 PE=1 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 1.059e-93
Identity = 161/201 (80.10%), Postives = 170/201 (84.58%), Query Frame = 3 
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            PKWNYDGSSTGQAPG+DSEVI+YPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF    VVAEE WYGIEQEYTLLQKD+KWP+                   ADKA+GRDIVDSHYKACLYAGIN+SG NGEVMPGQWEFQVGP VGI+A DQ+WVARYILERITE+AGVVLS DP PI GDWNGAGAH N
Sbjct:   51 PKWNYDGSSTGQAPGDDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFEDPSVVAEETWYGIEQEYTLLQKDIKWPVGWPVGGFPGPQGPYYCGVGADKAFGRDIVDSHYKACLYAGINVSGTNGEVMPGQWEFQVGPTVGIAAADQVWVARYILERITELAGVVLSLDPKPIPGDWNGAGAHTN 251
[Close]
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA3_MAIZE (Glutamine synthetase root isozyme 3 OS=Zea mays GN=GLN4 PE=1 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 1.383e-93
Identity = 161/201 (80.10%), Postives = 172/201 (85.57%), Query Frame = 3 
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCD YTPAGEPIPTNKR+ AAKIFS  +V AEEPWYGIEQEYTLLQKD  WPL                   A+K++GRDIVD+HYKACLYAGINISGINGEVMPGQWEFQVGP+VGIS+GDQ+WVARYILERITEIAGVV++FDP PI GDWNGAGAH N
Sbjct:   51 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYNAAKIFSSPEVAAEEPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIPGDWNGAGAHTN 251
[Close]
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA4_PEA (Glutamine synthetase root isozyme B OS=Pisum sativum GN=GS3B PE=3 SV=1)

HSP 1 Score: 340.887 bits (873), Expect = 3.080e-93
Identity = 159/201 (79.10%), Postives = 172/201 (85.57%), Query Frame = 3 
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            PKWNYDGSST QAPG+DSEVILYPQAIFKDPFRRGNNILV+CD YTPAGEP+PTNKR+ AAKIFSH DV AE PWYGIEQEYTLLQKD+ WPL                   ADKA+GRDIVD+HYKACL+AGINISGINGEVMPGQWEFQVGP+VGISAGD++W ARYILERITEI+GVV+SFDP PI GDWNGAGAHAN
Sbjct:   51 PKWNYDGSSTDQAPGKDSEVILYPQAIFKDPFRRGNNILVICDVYTPAGEPLPTNKRYNAAKIFSHPDVAAEVPWYGIEQEYTLLQKDINWPLGWPIGGYPGKQGPYYCGIGADKAYGRDIVDAHYKACLFAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWAARYILERITEISGVVVSFDPKPIPGDWNGAGAHAN 251
[Close]
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA2_PHAVU (Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 340.887 bits (873), Expect = 3.080e-93
Identity = 159/201 (79.10%), Postives = 172/201 (85.57%), Query Frame = 3 
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            PKWNYDGSST QAPG+DSEVILYPQAIFKDPFRRGNNILV+CD YTPAGEP+PTNKR+ AAKIFSH DVVAE PWYGIEQEYTLLQKDV WPL                   ADKA+GRDIVD+HYKAC+YAGINISGINGEVMPGQWEFQVGP+VGISAGD++W ARYILERITE+AG V+SFDP PI GDWNGAGAH+N
Sbjct:   51 PKWNYDGSSTDQAPGDDSEVILYPQAIFKDPFRRGNNILVICDVYTPAGEPLPTNKRYDAAKIFSHPDVVAEVPWYGIEQEYTLLQKDVNWPLGWPLGGYPGPQGPYYCGVGADKAYGRDIVDAHYKACVYAGINISGINGEVMPGQWEFQVGPSVGISAGDEVWAARYILERITELAGAVVSFDPKPIPGDWNGAGAHSN 251
[Close]
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA5_MAIZE (Glutamine synthetase root isozyme 5 OS=Zea mays GN=GS1-5 PE=2 SV=2)

HSP 1 Score: 339.732 bits (870), Expect = 6.862e-93
Identity = 157/201 (78.11%), Postives = 171/201 (85.07%), Query Frame = 3 
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR+GNNILVMCD YTP GEPIP+NKR+ AA +FSH DV AE PWYGIEQEYTLLQKD+ WPL                   ADKA+GRD+VD+HYKACLYAGINISGINGEVMPGQWEFQVGP+VGISAGD++WVARYILERITE+AG+VLS DP PI+GDWNGAGAH N
Sbjct:   51 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRKGNNILVMCDCYTPQGEPIPSNKRYKAATVFSHPDVAAEVPWYGIEQEYTLLQKDLSWPLGWPVGGYPGPQGPYYCAAGADKAFGRDVVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWVARYILERITEMAGIVLSLDPKPIKGDWNGAGAHTN 251
[Close]
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLN13_ARATH (Glutamine synthetase cytosolic isozyme 1-3 OS=Arabidopsis thaliana GN=GLN1-3 PE=1 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 1.997e-92
Identity = 157/201 (78.11%), Postives = 169/201 (84.08%), Query Frame = 3 
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            PKWNYDGSSTGQA GEDSEVILYPQAIFKDPFR+GNNILVMCDAYTPAG+PIPTNKRH AAKIFSH DV  EEPWYGIEQEYTL+QKDV WP+                   ADKA GRDIVD+HYKACLYAGI ISGINGEVMPGQWEFQVGP  GIS+GDQ+WVARY+LERITEI+GV++SFDP P+ GDWNGAGAH N
Sbjct:   51 PKWNYDGSSTGQAAGEDSEVILYPQAIFKDPFRKGNNILVMCDAYTPAGDPIPTNKRHNAAKIFSHPDVAKEEPWYGIEQEYTLMQKDVNWPIGWPVGGYPGPQGPYYCGVGADKAIGRDIVDAHYKACLYAGIGISGINGEVMPGQWEFQVGPVEGISSGDQVWVARYLLERITEISGVIVSFDPKPVPGDWNGAGAHCN 251
[Close]
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA3_HORVU (Glutamine synthetase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 1.690e-91
Identity = 157/201 (78.11%), Postives = 167/201 (83.08%), Query Frame = 3 
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            PKWNYDGSSTGQAPGEDSEVILYPQAI KDPFR GNNILVMCD YTP GEPIPTNKR+ AAKI S+ DV  EEPWYGIEQEYTLLQKD+ WPL                   ADK++GRDIVDSHYKACL+ G+NISGINGEVMPGQWEFQVGP VGISAGDQ+WVARYILERITEIAGVV++FDP PI GDWNGAGAH N
Sbjct:   51 PKWNYDGSSTGQAPGEDSEVILYPQAILKDPFREGNNILVMCDCYTPRGEPIPTNKRYNAAKILSNPDVAKEEPWYGIEQEYTLLQKDINWPLGWPVGGFPGPQGPYYCGIGADKSFGRDIVDSHYKACLFGGVNISGINGEVMPGQWEFQVGPTVGISAGDQVWVARYILERITEIAGVVVTFDPKPIPGDWNGAGAHTN 251
[Close]
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA1_SOYBN (Glutamine synthetase cytosolic isozyme 1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 334.724 bits (857), Expect = 2.207e-91
Identity = 158/201 (78.61%), Postives = 170/201 (84.58%), Query Frame = 3 
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            PKWNYDGSSTGQAPGEDSE I Y    F+DPFRRGNNILV+CDAYTPAGEPIPTNKRHAAAK+FSH DVVAE PWYGIEQEYTLLQKD++WPL                   ADKA+GRDIVD+HYKAC+YAGINISGINGEVMPGQWEFQVGP+VGISAGD++W ARYILERITEIAGVV+SFDP PI GDWNGAGAH N
Sbjct:   51 PKWNYDGSSTGQAPGEDSEAI-YTHKPFQDPFRRGNNILVICDAYTPAGEPIPTNKRHAAAKVFSHPDVVAEVPWYGIEQEYTLLQKDIQWPLGWPVGGFPGPQGPYYCGVGADKAFGRDIVDAHYKACIYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWAARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTN 250
[Close]
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_LACSA (Glutamine synthetase OS=Lactuca sativa PE=2 SV=2)

HSP 1 Score: 333.183 bits (853), Expect = 6.423e-91
Identity = 158/201 (78.61%), Postives = 169/201 (84.08%), Query Frame = 3 
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            PKWNYDGSSTGQAPGEDSEVI+YPQAIFKDPFRRGN+ILVMCDAYTPAGEPIPTNKR AAAKIFS+ +V  E  WYGIEQEYTLLQKD  WPL                   ADKA+GRDIVD+HYKACLYAG+NISGINGEVMPGQWEFQVGP+VGI+A DQ+WVARYILERITEI GVV+SFDP PI GDWNGAGAH N
Sbjct:   51 PKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNHILVMCDAYTPAGEPIPTNKRAAAAKIFSNPEVEKEVTWYGIEQEYTLLQKDTNWPLGWPLGGFPGPQGPYYCGIGADKAFGRDIVDAHYKACLYAGVNISGINGEVMPGQWEFQVGPSVGIAAADQIWVARYILERITEIYGVVVSFDPKPIPGDWNGAGAHTN 251
The following BLAST results are available for this feature:
BLAST of CF417291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA3_MEDSA1.059e-9379.60Glutamine synthetase nodule isozyme OS=Medicago sa... [more]
GLN14_ARATH1.059e-9380.10Glutamine synthetase cytosolic isozyme 1-4 OS=Arab... [more]
GLNA3_MAIZE1.383e-9380.10Glutamine synthetase root isozyme 3 OS=Zea mays GN... [more]
GLNA4_PEA3.080e-9379.10Glutamine synthetase root isozyme B OS=Pisum sativ... [more]
GLNA2_PHAVU3.080e-9379.10Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE... [more]
GLNA5_MAIZE6.862e-9378.11Glutamine synthetase root isozyme 5 OS=Zea mays GN... [more]
GLN13_ARATH1.997e-9278.11Glutamine synthetase cytosolic isozyme 1-3 OS=Arab... [more]
GLNA3_HORVU1.690e-9178.11Glutamine synthetase OS=Hordeum vulgare PE=2 SV=1[more]
GLNA1_SOYBN2.207e-9178.61Glutamine synthetase cytosolic isozyme 1 OS=Glycin... [more]
GLNA_LACSA6.423e-9178.61Glutamine synthetase OS=Lactuca sativa PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-221 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417291 ID=CF417291; Name=CF417291; organism=Citrus sinensis; type=EST; length=619bp
TGCCTAAGTGGAATTATGATGGTTCCAGCACAGGCCAAGCACCTGGAGAA
GATAGTGAAGTGATCCTCTATCCTCAAGCTATTTTCAAGGATCCATTCAG
GAGAGGCAACAATATTCTTGTTATGTGTGATGCTTACACTCCTGCGGGGG
AACCAATTCCAACAAACAAAAGACATGCAGCTGCCAAGATTTTCAGCCAT
TCTGACGTTGTGGCTGAAGAACCATGGTATGGTATTGAGCAGGAATACAC
CTTACTGCAGAAGGATGTTAAATGGCCTCTTGGCTGGCCCATCGGTGGTT
ATCCTGGGCCTCAGGGACCATACTACTGTGGTGTTGGTGCTGACAAAGCT
TGGGGGCGCGACATTGTAGACTCCCATTACAAGGCCTGTCTATATGCAGG
AATCAACATCAGTGGCATCAATGGAGAAGTCATGCCGGGGCAGTGGGAGT
TCCAAGTTGGTCCCGCTGTTGGAATTTCTGCTGGAGATCAGTTGTGGGTT
GCCCGCTATATTTTAGAGAGGATTACAGAGATTGCTGGAGTTGTGCTTTC
TTTCGATCCCNAGCCAATTCAGGGTGACTGGAATGGAGCTGGTGCTCACG
CAAATTTACAGCACCAAGT
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