CF417291

Overview
NameCF417291
Unique NameCF417291
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA2_ARATH (Glutamine synthetase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GLN2 PE=1 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 6.221e-86
Identity = 148/201 (73.63%), Postives = 162/201 (80.60%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            PKWNYDGSSTGQAPGEDSEVILYPQAIF+DPFR GNNILV+CD +TPAGEPIPTNKR  AA+IFS+  V  E PW+GIEQEYTLLQ++VKWPL                   ADK WGRDI D+HYKACLYAGINISG NGEVMPGQWEFQVGP+VGI AGD +W ARY+LERITE AGVVL+ DP PI+GDWNGAG H N
Sbjct:  109 PKWNYDGSSTGQAPGEDSEVILYPQAIFRDPFRGGNNILVICDTWTPAGEPIPTNKRAKAAEIFSNKKVSGEVPWFGIEQEYTLLQQNVKWPLGWPVGAFPGPQGPYYCGVGADKIWGRDISDAHYKACLYAGINISGTNGEVMPGQWEFQVGPSVGIDAGDHVWCARYLLERITEQAGVVLTLDPKPIEGDWNGAGCHTN 309          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_PINSY (Glutamine synthetase cytosolic isozyme OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.386e-85
Identity = 149/201 (74.13%), Postives = 163/201 (81.09%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            PKWNYDGSSTGQA G DSEVILYPQAIF+DPFRRG +ILV+CDAY+P G  IP+NKR AAAKIF+   V  EE WYG+EQEYTLLQKDVKWPL                   ADKAWGRDIVD+HYKACLY+GINISGINGEVMPGQWEFQVGP+VGISA D+LW AR+I+ERITE AGVVLSFDP PI+GDWNGAG H N
Sbjct:   52 PKWNYDGSSTGQAQGHDSEVILYPQAIFRDPFRRGKHILVICDAYSPNGTAIPSNKRAAAAKIFNEKAVSDEETWYGLEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDAHYKACLYSGINISGINGEVMPGQWEFQVGPSVGISAADELWCARFIMERITEKAGVVLSFDPKPIEGDWNGAGCHTN 252          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNAC_BRANA (Glutamine synthetase, chloroplastic OS=Brassica napus GN=GLN2 PE=2 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 4.032e-85
Identity = 147/201 (73.13%), Postives = 161/201 (80.10%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            PKWNYDGSSTGQAPGEDSEVILYPQAIF+DPFR GNNILV+CD YTPAGEPIPTNKR  AA+IFS+  V  E PW+GIEQEYTLLQ +V WPL                   A+K+WGRDI D+HYKACLYAGINISG NGEVMPGQWEFQVGP+VGI AGD +W ARY+LERITE AGVVL+ DP PI+GDWNGAG H N
Sbjct:  107 PKWNYDGSSTGQAPGEDSEVILYPQAIFRDPFRGGNNILVICDTYTPAGEPIPTNKRARAAEIFSNKKVNEEIPWFGIEQEYTLLQPNVNWPLGWPVGAYPGPQGPYYCGVGAEKSWGRDISDAHYKACLYAGINISGTNGEVMPGQWEFQVGPSVGIEAGDHVWCARYLLERITEQAGVVLTLDPKPIEGDWNGAGCHTN 307          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA2_HORVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 313.923 bits (803), Expect = 4.032e-85
Identity = 145/201 (72.14%), Postives = 161/201 (80.10%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR GNNILV+CD YTP GEPIPTNKRH AA+IFS   V ++ PW+GIEQEYTL+Q+DV WPL                   +DK++GRDI D+HYKACLYAGI ISG NGEVMPGQWE+QVGP+VGI AGD +W +RYILERITE AGVVL+ DP PIQGDWNGAG H N
Sbjct:  113 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPQGEPIPTNKRHMAAQIFSDPKVTSQVPWFGIEQEYTLMQRDVNWPLGWPVGGYPGPQGPYYCAVGSDKSFGRDISDAHYKACLYAGIEISGTNGEVMPGQWEYQVGPSVGIDAGDHIWASRYILERITEQAGVVLTLDPKPIQGDWNGAGCHTN 313          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA1_CHLRE (Glutamine synthetase cytosolic isozyme OS=Chlamydomonas reinhardtii GN=GLN1 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.153e-62
Identity = 114/211 (54.03%), Postives = 138/211 (65.40%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTP----------AGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            P WNYDGSSTGQAPG DSEV L P++IFKDPFR G+NILVMCD Y P          A +PIPTN R A A++   +    EEPW+GIEQEYTLL    KWPL                   A  A GRD+ + HY+ CL AG+NISG+N EV+P QWE+QVGP  GI+ GD +W++RYI+ R+ E+  V +SFDP PI GDWNG+G H N
Sbjct:   70 PHWNYDGSSTGQAPGHDSEVYLIPRSIFKDPFRGGDNILVMCDCYEPPKVNPDGTLAAPKPIPTNTRFACAEVMEKAK--KEEPWFGIEQEYTLLNAITKWPLGWPKGGYPAPQGPYYCSAGAGVAIGRDVAEVHYRLCLAAGVNISGVNAEVLPSQWEYQVGPCEGITMGDHMWMSRYIMYRVCEMFNVEVSFDPKPIPGDWNGSGGHTN 278          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA2_DROME (Glutamine synthetase 2 cytoplasmic OS=Drosophila melanogaster GN=Gs2 PE=2 SV=3)

HSP 1 Score: 232.261 bits (591), Expect = 1.543e-60
Identity = 114/202 (56.44%), Postives = 134/202 (66.34%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHANL 608
            P WNYDGSS  QA G +S+  LYP AI+KDPFRRGNNILVMCD Y   G P  TNKR    ++ +     AEEPW+GIEQEYT L  D   PL                   A+K + RDIVD+HY+ACLYAGI +SG N EVMP QWEFQVGP  GIS GD LW+AR++L RI+E  G+V + DP P+ GDWNGAGAH N+
Sbjct:   64 PVWNYDGSSCYQAEGSNSDTYLYPVAIYKDPFRRGNNILVMCDTYKFDGTPTDTNKRKTCLEVANKC--AAEEPWFGIEQEYTFLDFDGH-PLGWPKNGFPGPQGPYYCGVGANKVYARDIVDAHYRACLYAGIKVSGTNAEVMPAQWEFQVGPCEGISIGDDLWMARFLLHRISEEFGIVSTLDPKPMPGDWNGAGAHTNV 262          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_AGABI (Glutamine synthetase OS=Agaricus bisporus GN=glnA PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 9.361e-58
Identity = 108/199 (54.27%), Postives = 131/199 (65.83%), Query Frame = 3
Query:    9 WNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            W++DGSST QAPG DS+V L P AIFKDPFR G+NILV+ + Y   G P  TN RH A K+F  +     EPW+G+EQEYTL   D + P                      K + RD++++HY+ACLYAGINISGIN EVMP QWEFQVGP  GIS GD LW+ARY+L RI E  GV +SF P P++G+WNGAG H N
Sbjct:   55 WDFDGSSTNQAPGHDSDVYLRPAAIFKDPFRGGDNILVLAETYNNDGTPNRTNHRHHAKKVFDEAK--EHEPWFGLEQEYTLFDADDQ-PYGWPKGGFPGPQGPYYCGAGTGKVFARDLIEAHYRACLYAGINISGINAEVMPSQWEFQVGPCEGISMGDHLWMARYLLVRIAEQWGVKVSFHPKPLKGEWNGAGCHTN 250          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_TUBBO (Glutamine synthetase OS=Tuber borchii GN=GLN1 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.724e-57
Identity = 109/209 (52.15%), Postives = 134/209 (64.11%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF-SHSDVVAEEPWYGIEQEYTLLQ---KDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHANLQHQ 617
            P+WN+DGSSTGQAPGEDS++ L P AIF DPFR G+NILV+ + +   G P   N RH  AKI  +H D   ++PW+G+EQEYTL         WP                      K + RDIV++HYKACL+AGI ISGIN EV+P QWEFQVGP VGI  GD LW++RY+L R+ E  GV +SF P PI GDWNG+G H N+  Q
Sbjct:   57 PEWNFDGSSTGQAPGEDSDIYLRPVAIFPDPFRMGDNILVLAECWNADGSPNKFNHRHECAKIMEAHKD---QKPWFGLEQEYTLFDLYGNPYGWP----KGGFPGPQGPYYCGVGTGKVYCRDIVEAHYKACLFAGIKISGINAEVLPSQWEFQVGPCVGIEMGDHLWISRYLLHRVAEEFGVKISFHPKPIPGDWNGSGLHTNVSTQ 258          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_CANGA (Glutamine synthetase OS=Candida glabrata GN=GLN1 PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 3.557e-57
Identity = 109/206 (52.91%), Postives = 133/206 (64.56%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF-SHSDVVAEEPWYGIEQEYTLLQ---KDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHANL 608
            P+WN+DGSST QAPG DS++ L P A + DPFRRG+NI V+ + +   G P   N RH A K+F +H D   EE W+GIEQEYTL         WP                    A K + RD++++HY+ACLYAGINISGIN EVMP QWEFQVGP  GIS GDQLW+ARY L R+ E  GV +SF P P++GDWNGAG H N+
Sbjct:   55 PEWNFDGSSTNQAPGYDSDIYLKPVAFYPDPFRRGDNITVLAECFNSDGTPNKFNHRHEANKLFQAHKD---EEIWFGIEQEYTLFDMYDNVYAWP----KGGYPAPQGPYYCGVGAGKVYARDVIEAHYRACLYAGINISGINAEVMPSQWEFQVGPCEGISMGDQLWMARYFLHRVAEEFGVKISFHPKPLKGDWNGAGCHTNV 253          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_EMENI (Glutamine synthetase OS=Emericella nidulans GN=glnA PE=3 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 4.646e-57
Identity = 104/202 (51.49%), Postives = 133/202 (65.84%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHANL 608
            P+WN+DGSST QAPG++S+V L P A++ DPFRRG+NILV+C+ +   G P   N RH  A++        EE W+G+EQEYTLL  D  WP                      K + RDIV++HY+ACLYAG+ ISGIN EVMP QWE+QVGP  GI  GD LW++R++L R+ E  GV +SFDP PI+GDWNGAG H N+
Sbjct:   43 PEWNFDGSSTAQAPGDNSDVYLRPVAMYPDPFRRGDNILVLCETWDSDGSPNKFNYRHDCARLMETH--AKEEFWFGLEQEYTLLGPD-GWPYGWPKGGFPGAQGPYYCGVGTGKVYCRDIVEAHYRACLYAGVKISGINAEVMPSQWEYQVGPCHGIEMGDHLWISRFLLHRVAEEFGVKISFDPKPIKGDWNGAGLHTNV 241          
The following BLAST results are available for this feature:
BLAST of CF417291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA2_ARATH6.221e-8673.63Glutamine synthetase, chloroplastic/mitochondrial ... [more]
GLNA_PINSY1.386e-8574.13Glutamine synthetase cytosolic isozyme OS=Pinus sy... [more]
GLNAC_BRANA4.032e-8573.13Glutamine synthetase, chloroplastic OS=Brassica na... [more]
GLNA2_HORVU4.032e-8572.14Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA1_CHLRE2.153e-6254.03Glutamine synthetase cytosolic isozyme OS=Chlamydo... [more]
GLNA2_DROME1.543e-6056.44Glutamine synthetase 2 cytoplasmic OS=Drosophila m... [more]
GLNA_AGABI9.361e-5854.27Glutamine synthetase OS=Agaricus bisporus GN=glnA ... [more]
GLNA_TUBBO2.724e-5752.15Glutamine synthetase OS=Tuber borchii GN=GLN1 PE=2... [more]
GLNA_CANGA3.557e-5752.91Glutamine synthetase OS=Candida glabrata GN=GLN1 P... [more]
GLNA_EMENI4.646e-5751.49Glutamine synthetase OS=Emericella nidulans GN=gln... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-221 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417291 ID=CF417291; Name=CF417291; organism=Citrus sinensis; type=EST; length=619bp
TGCCTAAGTGGAATTATGATGGTTCCAGCACAGGCCAAGCACCTGGAGAA
GATAGTGAAGTGATCCTCTATCCTCAAGCTATTTTCAAGGATCCATTCAG
GAGAGGCAACAATATTCTTGTTATGTGTGATGCTTACACTCCTGCGGGGG
AACCAATTCCAACAAACAAAAGACATGCAGCTGCCAAGATTTTCAGCCAT
TCTGACGTTGTGGCTGAAGAACCATGGTATGGTATTGAGCAGGAATACAC
CTTACTGCAGAAGGATGTTAAATGGCCTCTTGGCTGGCCCATCGGTGGTT
ATCCTGGGCCTCAGGGACCATACTACTGTGGTGTTGGTGCTGACAAAGCT
TGGGGGCGCGACATTGTAGACTCCCATTACAAGGCCTGTCTATATGCAGG
AATCAACATCAGTGGCATCAATGGAGAAGTCATGCCGGGGCAGTGGGAGT
TCCAAGTTGGTCCCGCTGTTGGAATTTCTGCTGGAGATCAGTTGTGGGTT
GCCCGCTATATTTTAGAGAGGATTACAGAGATTGCTGGAGTTGTGCTTTC
TTTCGATCCCNAGCCAATTCAGGGTGACTGGAATGGAGCTGGTGCTCACG
CAAATTTACAGCACCAAGT
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