CF417291

Overview
NameCF417291
Unique NameCF417291
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_HEBCY (Glutamine synthetase OS=Hebeloma cylindrosporum GN=GLN1 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.035e-56
Identity = 107/199 (53.77%), Postives = 129/199 (64.82%), Query Frame = 3
Query:    9 WNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            W++DGSST QAPG DS+V L P AIFKDPFR G+NILV+ + Y   G P  TN RH AAK+   +    + PW+G+EQEYTL   D   P                      K + RD++++HY+ACLY+GINISGIN EVMP QWEFQVGP  GIS GD LW+ARY+L RI E   V +SF P P+QGDWNGAG H N
Sbjct:   55 WDFDGSSTNQAPGHDSDVYLRPAAIFKDPFRGGDNILVLAETYNSDGTPNRTNFRHHAAKVMEQAK--EDVPWFGLEQEYTLFDADGS-PYGWPKGGFPGPQGPYYCGAGTGKVFARDLIEAHYRACLYSGINISGINAEVMPSQWEFQVGPCEGISMGDHLWMARYLLVRIAEQWAVKVSFHPKPLQGDWNGAGCHTN 250          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_YEAST (Glutamine synthetase OS=Saccharomyces cerevisiae GN=GLN1 PE=1 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 1.352e-56
Identity = 108/206 (52.43%), Postives = 135/206 (65.53%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFS-HSDVVAEEPWYGIEQEYTL--LQKDVK-WPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHANL 608
            P+WN+DGSST QAPG DS++ L P A + DPFRRG+NI+V+   Y   G P   N RH AAK+F+ H D   EE W+G+EQEYTL  +  DV  WP                    A K + RD++++HY+ACLYAG+ ISGIN EVMP QWEFQVGP  GI  GDQLW+ARY L R+ E  G+ +SF P P++GDWNGAG H N+
Sbjct:   55 PEWNFDGSSTNQAPGHDSDIYLKPVAYYPDPFRRGDNIVVLAACYNNDGTPNKFNHRHEAAKLFAAHKD---EEIWFGLEQEYTLFDMYDDVYGWP----KGGYPAPQGPYYCGVGAGKVYARDMIEAHYRACLYAGLEISGINAEVMPSQWEFQVGPCTGIDMGDQLWMARYFLHRVAEEFGIKISFHPKPLKGDWNGAGCHTNV 253          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_KLULA (Glutamine synthetase OS=Kluyveromyces lactis GN=GLN1 PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.306e-56
Identity = 105/206 (50.97%), Postives = 135/206 (65.53%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF-SHSDVVAEEPWYGIEQEYTLLQKDVK---WPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHANL 608
            P+WN+DGSSTGQAPG DS++ L P A + DPFRRG+NI+V+ + +   G P   N RH AAK+F +H D    E W+G+EQEYTL  +  +   WP                    A K + RD++++HY+ACLYAG+NISGIN EVMP QWEFQVGP  GI+  DQLW+ARY L R+ E  GV +S  P P++GDWNGAG H N+
Sbjct:   57 PEWNFDGSSTGQAPGHDSDIYLKPVAFYPDPFRRGDNIVVLAECWNNDGTPNKFNHRHEAAKLFEAHKDA---EMWFGLEQEYTLFDQYDQVYGWP----KGGFPAPQGPYYCGVGAGKVFARDVIEAHYRACLYAGVNISGINAEVMPSQWEFQVGPCEGIAMADQLWIARYFLHRVAEEFGVKVSLHPKPLKGDWNGAGCHTNV 255          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_ASHGO (Glutamine synthetase OS=Ashbya gossypii GN=GLN1 PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.306e-56
Identity = 105/205 (51.22%), Postives = 133/205 (64.88%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVK---WPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHANL 608
            P+WN+DGSSTGQAPG DS+V L P A + DPFRRG+NI+V+ + +   G P   N RH AAK+F      A + W+G+EQEYTL   +     WP                    A K + RD+V++HY+ACLYAG+ ISGIN EVMP QWEFQVGP  GI+ GD+LWV RY+L R+ E  GV +SF P P++GDWNGAG H N+
Sbjct:   54 PEWNFDGSSTGQAPGHDSDVYLKPVAFYPDPFRRGDNIIVLAECWNNDGTPNKYNHRHEAAKLFEAHR--AADIWFGLEQEYTLFDHNDNVYGWP----KGGFPAPQGPYYCGVGAGKVYARDVVEAHYRACLYAGLRISGINAEVMPSQWEFQVGPCTGITMGDELWVGRYLLHRVAEEFGVKVSFHPKPLKGDWNGAGCHTNV 252          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_SCHPO (Glutamine synthetase OS=Schizosaccharomyces pombe GN=gln1 PE=1 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 6.708e-56
Identity = 108/204 (52.94%), Postives = 133/204 (65.20%), Query Frame = 3
Query:    9 WNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFS-HSDVVAEEPWYGIEQEYTLLQ---KDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHANL 608
            WN+DGSSTGQAPG +S+ +L P A++ DPFRRG+NILV+   YT  G P   N R A AK+   H+D   +E W+GIEQEYT+L    +   WP                      + + RDIV++HYKACLYAGINISGIN EVMP QWE+QVGP  GI  GDQLW++R++L RI E  GV +SF P PI GDWNGAG H N+
Sbjct:   61 WNFDGSSTGQAPGNNSDTLLKPVAMYNDPFRRGDNILVLAACYTADGSPNGFNHRDACAKLLEKHAD---KETWFGIEQEYTMLDYYDRPFGWP----KGGFPGPQGPFYCGVGTGRVFARDIVEAHYKACLYAGINISGINAEVMPSQWEYQVGPCAGIEMGDQLWMSRFLLHRIAEDFGVKISFHPKPILGDWNGAGCHTNV 257          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_AMAMU (Glutamine synthetase OS=Amanita muscaria GN=GLN1 PE=2 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 6.708e-56
Identity = 107/199 (53.77%), Postives = 128/199 (64.32%), Query Frame = 3
Query:    9 WNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            W++DGSST QAP  +S+V L P AIFKDPFR G NILV+ + Y   G P  TN RH  AK+   +    E PW+GIEQEYTL   D   P                      K + RD++++HY+ACLYAG+NISGIN EVMP QWEFQVGP  GIS GD LW+ARY+L R+ E  GV +SF P P+QGDWNGAGAH N
Sbjct:   55 WDFDGSSTNQAPSGNSDVYLRPSAIFKDPFRGGENILVLSETYNNDGTPNRTNHRHHTAKVMELAK--DEIPWFGIEQEYTLFDADGS-PYGWPKGGFPGPQGPYYCGAGTGKVFARDLIEAHYRACLYAGVNISGINAEVMPSQWEFQVGPCEGISMGDHLWMARYLLIRVAEQWGVKVSFHPKPLQGDWNGAGAHTN 250          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_YARLI (Glutamine synthetase OS=Yarrowia lipolytica GN=GLN1 PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.952e-55
Identity = 102/205 (49.76%), Postives = 133/205 (64.88%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKD---VKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHANL 608
            P+WN+DGSST QAPG DS++ L P AI+ DPFRRG+NI+V+ + +   G P   N RH  AK+ S  +   E  W+GIEQEYT+  +    V WP                      K + RD+V++HY+ACLY+GINISGIN EVMP QWE+QVGP  GIS  D+LW++RY+L R+ E  G+ +SF P P+QGDWNGAG H N+
Sbjct:   46 PEWNFDGSSTDQAPGHDSDIYLRPAAIYPDPFRRGDNIIVLAECWNNDGTPNKFNHRHECAKLMSAHE--KEVIWFGIEQEYTMFDESDNPVGWP----KGGFPAPQGPYYCGVGTGKVFARDVVEAHYRACLYSGINISGINAEVMPSQWEYQVGPCEGISMADELWMSRYLLHRVAEEFGIKISFHPKPLQGDWNGAGCHTNV 244          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_DEBHA (Glutamine synthetase OS=Debaryomyces hansenii GN=GLN1 PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.952e-55
Identity = 100/203 (49.26%), Postives = 136/203 (67.00%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF-SHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHANL 608
            P+WN+DGSSTGQAPG DS+V L P A + DPFR+G+NI+V+ + +   G P   N RH +AK+  +H+D   EE W+G+EQEYTL  +    P                      K + RD++++HY+ACL+AG++ISGIN EVMP QWEFQVGP  GI  GD+LW+ARY+L+R+ E  GV +SF P P++G+WNGAG H N+
Sbjct:   54 PEWNFDGSSTGQAPGHDSDVYLRPVAFYADPFRKGDNIIVLTECWNNDGTPNKFNHRHESAKLMKAHAD---EEVWFGLEQEYTLFDQ-FDQPYAWPKGGFPAPQGPYYCGVGTGKVYARDLIEAHYRACLHAGVDISGINAEVMPSQWEFQVGPCEGIQMGDELWIARYLLQRVAEEFGVKVSFHPKPLKGEWNGAGCHTNV 252          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_RAT (Glutamine synthetase OS=Rattus norvegicus GN=Glul PE=1 SV=3)

HSP 1 Score: 213.772 bits (543), Expect = 5.679e-55
Identity = 102/201 (50.75%), Postives = 132/201 (65.67%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            P+WN+DGSST Q+ G +S++ L+P A+F+DPFRR  N LV C+ +    +P  TN RH+  +I     V ++ PW+G+EQEYTL+  D   P                    ADKA+GRDIV++HY+ACLYAGI I+G N EVMP QWEFQ+GP  GI  GD LWVAR+IL R+ E  GV+ +FDP PI G+WNGAG H N
Sbjct:   58 PEWNFDGSSTFQSEGSNSDMYLHPVAMFRDPFRRDPNKLVFCEVFKYNRKPAETNLRHSCKRIMDM--VSSQHPWFGMEQEYTLMGTDGH-PFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGIKITGTNAEVMPAQWEFQIGPCEGIRMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTN 255          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_PANAR (Glutamine synthetase OS=Panulirus argus PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 5.679e-55
Identity = 102/201 (50.75%), Postives = 133/201 (66.17%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            P WN+DGSSTGQA   +S+V LYP A+++DPFR GNN LV+C+ Y    +P  TN+R    ++ + +    + PW+G+EQEYTLL  D K PL                   A++ +GRD+V++HY+ACL AGINISG N +VMP QWEFQVGP  GI+ GD LW+ARY+L R+ E   VV++ DP PI GDWNGAG H N
Sbjct:   55 PIWNFDGSSTGQAERSNSDVYLYPVAVYRDPFRLGNNKLVLCETYKYNKKPADTNQRWKCMEVMTRA--ADQHPWFGMEQEYTLLDID-KHPLGWPKNGYPGPQGPYYCGVGANRVYGRDVVEAHYRACLCAGINISGENAKVMPAQWEFQVGPCEGITMGDDLWMARYLLHRVAEDFDVVVTLDPKPIPGDWNGAGMHTN 252          
The following BLAST results are available for this feature:
BLAST of CF417291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA_HEBCY1.035e-5653.77Glutamine synthetase OS=Hebeloma cylindrosporum GN... [more]
GLNA_YEAST1.352e-5652.43Glutamine synthetase OS=Saccharomyces cerevisiae G... [more]
GLNA_KLULA2.306e-5650.97Glutamine synthetase OS=Kluyveromyces lactis GN=GL... [more]
GLNA_ASHGO2.306e-5651.22Glutamine synthetase OS=Ashbya gossypii GN=GLN1 PE... [more]
GLNA_SCHPO6.708e-5652.94Glutamine synthetase OS=Schizosaccharomyces pombe ... [more]
GLNA_AMAMU6.708e-5653.77Glutamine synthetase OS=Amanita muscaria GN=GLN1 P... [more]
GLNA_YARLI1.952e-5549.76Glutamine synthetase OS=Yarrowia lipolytica GN=GLN... [more]
GLNA_DEBHA1.952e-5549.26Glutamine synthetase OS=Debaryomyces hansenii GN=G... [more]
GLNA_RAT5.679e-5550.75Glutamine synthetase OS=Rattus norvegicus GN=Glul ... [more]
GLNA_PANAR5.679e-5550.75Glutamine synthetase OS=Panulirus argus PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-221 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417291 ID=CF417291; Name=CF417291; organism=Citrus sinensis; type=EST; length=619bp
TGCCTAAGTGGAATTATGATGGTTCCAGCACAGGCCAAGCACCTGGAGAA
GATAGTGAAGTGATCCTCTATCCTCAAGCTATTTTCAAGGATCCATTCAG
GAGAGGCAACAATATTCTTGTTATGTGTGATGCTTACACTCCTGCGGGGG
AACCAATTCCAACAAACAAAAGACATGCAGCTGCCAAGATTTTCAGCCAT
TCTGACGTTGTGGCTGAAGAACCATGGTATGGTATTGAGCAGGAATACAC
CTTACTGCAGAAGGATGTTAAATGGCCTCTTGGCTGGCCCATCGGTGGTT
ATCCTGGGCCTCAGGGACCATACTACTGTGGTGTTGGTGCTGACAAAGCT
TGGGGGCGCGACATTGTAGACTCCCATTACAAGGCCTGTCTATATGCAGG
AATCAACATCAGTGGCATCAATGGAGAAGTCATGCCGGGGCAGTGGGAGT
TCCAAGTTGGTCCCGCTGTTGGAATTTCTGCTGGAGATCAGTTGTGGGTT
GCCCGCTATATTTTAGAGAGGATTACAGAGATTGCTGGAGTTGTGCTTTC
TTTCGATCCCNAGCCAATTCAGGGTGACTGGAATGGAGCTGGTGCTCACG
CAAATTTACAGCACCAAGT
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