CF417291

Overview
NameCF417291
Unique NameCF417291
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_SUIBO (Glutamine synthetase OS=Suillus bovinus GN=GLNA PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 9.687e-55
Identity = 104/200 (52.00%), Postives = 128/200 (64.00%), Query Frame = 3
Query:    9 WNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEE-PWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            W++DGSST QAPG DS+V L P AIFKDPFR G+NILV+ + +   G P  TN RH   K+    D+  +  PW+G+EQEYTL   D   P                      K + RD++++HY+ACLYAG+NISGIN EVMP QWEFQVGP  GIS GD LW+ARY+L RI E  G+ +SF P P+ GDWNGAG H N
Sbjct:   55 WDFDGSSTNQAPGGDSDVYLRPAAIFKDPFRGGDNILVLAETFNNDGTPNRTNHRHHTKKVM---DLAKDSVPWFGLEQEYTLFDADGT-PFGWPKGGFPGPQGPYYCGAGTGKVFARDLIEAHYRACLYAGVNISGINAEVMPSQWEFQVGPCEGISMGDHLWMARYLLVRIAEQWGIKVSFHPKPLAGDWNGAGCHTN 250          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_CHICK (Glutamine synthetase OS=Gallus gallus GN=GLUL PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.158e-54
Identity = 103/202 (50.99%), Postives = 132/202 (65.35%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEE-PWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            P+WN+DGSST QA G +S++ L P A+F+DPFR+  N LV+C+ +    +   TN RH   +I    D+V+ + PW+G+EQEYTLL  D   P                    ADKA+GRDIV++HY+ACLYAG+ I G N EVMP QWEFQVGP  GI  GD LW+AR+IL R+ E  GV++SFDP PI G+WNGAG H N
Sbjct:   58 PEWNFDGSSTFQAEGSNSDMYLRPAAMFRDPFRKDPNKLVLCEVFKYNRQSADTNLRHTCRRIM---DMVSNQHPWFGMEQEYTLLGTDGH-PFGWPSNCFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGVKIGGTNAEVMPAQWEFQVGPCEGIEMGDHLWIARFILHRVCEDFGVIVSFDPKPIPGNWNGAGCHTN 255          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_COLGL (Glutamine synthetase OS=Colletotrichum gloeosporioides GN=GLN1 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.818e-54
Identity = 105/201 (52.24%), Postives = 125/201 (62.19%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            P WN+DGSSTGQAPG++S+V L P A+F DPFR   NILV+ + +   G P   N RH  AK+       A EPW+G+EQEYTLL    + P                      K   RDIVD+HYKACLY+G+ ISG N EVMP QWEFQVGP VGI  GD LW+AR++L RI E  G  +S DP PI GDWNGAG H+N
Sbjct:   57 PMWNFDGSSTGQAPGDNSDVYLKPVAVFPDPFRGSPNILVLSECWNADGTPNKYNYRHECAKLMEAH--AAHEPWFGLEQEYTLLDLSNR-PFGWPANGFPAPQGPYYCGVGTGKVVQRDIVDAHYKACLYSGVKISGTNAEVMPAQWEFQVGPCVGIEMGDHLWLARFLLARIAEEFGAKVSVDPKPIPGDWNGAGLHSN 254          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_NEUCR (Glutamine synthetase OS=Neurospora crassa GN=gln-1 PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.681e-54
Identity = 106/202 (52.48%), Postives = 129/202 (63.86%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF-SHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            P WN+DGSSTGQAPGE+S+V L P A+F DPFR   NILV+ + +   G P   N RH AAK+  +H+D V   PW+G+EQEYTLL  + + P                      K   RDIV++HYK CLYAG+ ISG N EVMP QWEFQVGP  GI  GD LW+AR++L R++E  G  +SFDP PI GDWNGAG H N
Sbjct:   59 PIWNFDGSSTGQAPGENSDVYLKPVAVFPDPFRGSPNILVLSECWNADGTPNKFNHRHEAAKLMEAHADQV---PWFGLEQEYTLLDINDR-PYGWPRNGFPAPQGPYYCGVGTGKVVQRDIVEAHYKCCLYAGVKISGTNAEVMPAQWEFQVGPCDGIEMGDHLWLARFLLHRVSEEFGAKVSFDPKPIPGDWNGAGLHTN 256          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_MOUSE (Glutamine synthetase OS=Mus musculus GN=Glul PE=1 SV=6)

HSP 1 Score: 211.075 bits (536), Expect = 3.681e-54
Identity = 100/202 (49.50%), Postives = 134/202 (66.34%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEE-PWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            P+WN+DGSST Q+ G +S++ L+P A+F+DPFR+  N LV+C+ +    +P  TN RH   +I    D+V+ + PW+G+EQEYTL+  D   P                    ADKA+GRDIV++HY+ACLYAG+ I+G N EVMP QWEFQ+GP  GI  GD LW+AR+IL R+ E  GV+ +FDP PI G+WNGAG H N
Sbjct:   58 PEWNFDGSSTFQSEGSNSDMYLHPVAMFRDPFRKDPNKLVLCEVFKYNRKPAETNLRHICKRIM---DMVSNQHPWFGMEQEYTLMGTDGH-PFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGVKITGTNAEVMPAQWEFQIGPCEGIRMGDHLWIARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTN 255          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_HUMAN (Glutamine synthetase OS=Homo sapiens GN=GLUL PE=1 SV=4)

HSP 1 Score: 211.075 bits (536), Expect = 3.681e-54
Identity = 101/202 (50.00%), Postives = 133/202 (65.84%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEE-PWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            P+WN+DGSST Q+ G +S++ L P A+F+DPFR+  N LV+C+ +     P  TN RH   +I    D+V+ + PW+G+EQEYTL+  D   P                    AD+A+GRDIV++HY+ACLYAG+ I+G N EVMP QWEFQ+GP  GIS GD LWVAR+IL R+ E  GV+ +FDP PI G+WNGAG H N
Sbjct:   58 PEWNFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRIM---DMVSNQHPWFGMEQEYTLMGTDGH-PFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHYRACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTN 255          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_CANFA (Glutamine synthetase OS=Canis familiaris GN=GLUL PE=1 SV=3)

HSP 1 Score: 211.075 bits (536), Expect = 3.681e-54
Identity = 102/202 (50.50%), Postives = 132/202 (65.35%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEE-PWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            P+WN+DGSST Q+ G +S++ L P A+F+DPFR+  N LV C+ +    +P  TN RH   +I    D+V+ + PW+G+EQEYTL+  D   P                    ADKA+GRDIV++HY+ACLYAGI I+G N EVMP QWEFQ+GP  GI  GD LWVAR+IL R+ E  GV+ +FDP PI G+WNGAG H N
Sbjct:   58 PEWNFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRIM---DMVSNQHPWFGMEQEYTLMGTDGH-PFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGIKIAGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTN 255          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_PIG (Glutamine synthetase OS=Sus scrofa GN=GLUL PE=2 SV=3)

HSP 1 Score: 210.69 bits (535), Expect = 4.808e-54
Identity = 102/202 (50.50%), Postives = 131/202 (64.85%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEE-PWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            P+WN+DGSST Q+ G +S++ L P A+F+DPFR+  N LV C+ +    +P  TN RH   +I    D+V+ + PW+G+EQEYTL+  D   P                    ADKA+GRDIV++HY+ACLYAGI I G N EVMP QWEFQ+GP  GI  GD LWVAR+IL R+ E  GV+ +FDP PI G+WNGAG H N
Sbjct:   58 PEWNFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRIM---DMVSNQHPWFGMEQEYTLMGTDGH-PFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGIKIGGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTN 255          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_BOVIN (Glutamine synthetase OS=Bos taurus GN=GLUL PE=2 SV=4)

HSP 1 Score: 210.69 bits (535), Expect = 4.808e-54
Identity = 102/202 (50.50%), Postives = 131/202 (64.85%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEE-PWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            P+WN+DGSST Q+ G +S++ L P A+F+DPFR+  N LV C+ +    +P  TN RH   +I    D+V+ + PW+G+EQEYTL+  D   P                    ADKA+GRDIV++HY+ACLYAGI I G N EVMP QWEFQ+GP  GI  GD LWVAR+IL R+ E  GV+ +FDP PI G+WNGAG H N
Sbjct:   58 PEWNFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRIM---DMVSNQRPWFGMEQEYTLMGTDGH-PFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGIKIGGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTN 255          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_SQUAC (Glutamine synthetase, mitochondrial OS=Squalus acanthias PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 6.279e-54
Identity = 101/201 (50.25%), Postives = 130/201 (64.68%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            P+WN+DGSST Q+ G +S++ L P A+F+DPFRR  N LV+C+      +P  +N RH+  KI S   +  E PW+G+EQEYTLL  D   P                    ADKA+GRDIV++HY+ACLYAGI +SG N EVM  QWE+QVGP  GI  GD LW++R+IL R+ E  G++ SFDP PI G+WNGAG H N
Sbjct:   87 PEWNFDGSSTYQSEGSNSDMYLVPSAMFRDPFRRDPNKLVLCEVLKYNRKPAESNLRHSCQKIMSM--IANEYPWFGMEQEYTLLGTDGH-PFGWPSNCFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGIELSGTNAEVMAAQWEYQVGPCEGIQMGDHLWISRFILHRVCEDFGIIASFDPKPIPGNWNGAGCHTN 284          
The following BLAST results are available for this feature:
BLAST of CF417291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA_SUIBO9.687e-5552.00Glutamine synthetase OS=Suillus bovinus GN=GLNA PE... [more]
GLNA_CHICK2.158e-5450.99Glutamine synthetase OS=Gallus gallus GN=GLUL PE=2... [more]
GLNA_COLGL2.818e-5452.24Glutamine synthetase OS=Colletotrichum gloeosporio... [more]
GLNA_NEUCR3.681e-5452.48Glutamine synthetase OS=Neurospora crassa GN=gln-1... [more]
GLNA_MOUSE3.681e-5449.50Glutamine synthetase OS=Mus musculus GN=Glul PE=1 ... [more]
GLNA_HUMAN3.681e-5450.00Glutamine synthetase OS=Homo sapiens GN=GLUL PE=1 ... [more]
GLNA_CANFA3.681e-5450.50Glutamine synthetase OS=Canis familiaris GN=GLUL P... [more]
GLNA_PIG4.808e-5450.50Glutamine synthetase OS=Sus scrofa GN=GLUL PE=2 SV... [more]
GLNA_BOVIN4.808e-5450.50Glutamine synthetase OS=Bos taurus GN=GLUL PE=2 SV... [more]
GLNA_SQUAC6.279e-5450.25Glutamine synthetase, mitochondrial OS=Squalus aca... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-221 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417291 ID=CF417291; Name=CF417291; organism=Citrus sinensis; type=EST; length=619bp
TGCCTAAGTGGAATTATGATGGTTCCAGCACAGGCCAAGCACCTGGAGAA
GATAGTGAAGTGATCCTCTATCCTCAAGCTATTTTCAAGGATCCATTCAG
GAGAGGCAACAATATTCTTGTTATGTGTGATGCTTACACTCCTGCGGGGG
AACCAATTCCAACAAACAAAAGACATGCAGCTGCCAAGATTTTCAGCCAT
TCTGACGTTGTGGCTGAAGAACCATGGTATGGTATTGAGCAGGAATACAC
CTTACTGCAGAAGGATGTTAAATGGCCTCTTGGCTGGCCCATCGGTGGTT
ATCCTGGGCCTCAGGGACCATACTACTGTGGTGTTGGTGCTGACAAAGCT
TGGGGGCGCGACATTGTAGACTCCCATTACAAGGCCTGTCTATATGCAGG
AATCAACATCAGTGGCATCAATGGAGAAGTCATGCCGGGGCAGTGGGAGT
TCCAAGTTGGTCCCGCTGTTGGAATTTCTGCTGGAGATCAGTTGTGGGTT
GCCCGCTATATTTTAGAGAGGATTACAGAGATTGCTGGAGTTGTGCTTTC
TTTCGATCCCNAGCCAATTCAGGGTGACTGGAATGGAGCTGGTGCTCACG
CAAATTTACAGCACCAAGT
back to top