CF417291

Overview
NameCF417291
Unique NameCF417291
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_ACOCA (Glutamine synthetase OS=Acomys cahirinus GN=GLUL PE=2 SV=3)

HSP 1 Score: 209.534 bits (532), Expect = 1.071e-53
Identity = 101/202 (50.00%), Postives = 133/202 (65.84%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEE-PWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            P+WN+DGSST Q+ G +S++ L P A+F+DPFR+  N LV C+ +    +P  TN RH+  +I    D+V+ + PW+G+EQEYTL+  D   P                    ADKA+GRDIV++HY+ACLYAG+ I+G N EVMP QWEFQ+GP  GI  GD LWVAR+IL R+ E  GV+ +FDP PI G+WNGAG H N
Sbjct:   58 PEWNFDGSSTFQSEGSNSDMYLSPVAMFRDPFRKEPNKLVFCEVFKYNRKPAETNLRHSCKRIM---DMVSNQHPWFGMEQEYTLMGTDGH-PFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGVKITGTNAEVMPAQWEFQIGPCEGIRMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTN 255          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_MACFA (Glutamine synthetase OS=Macaca fascicularis GN=GLUL PE=2 SV=3)

HSP 1 Score: 209.149 bits (531), Expect = 1.399e-53
Identity = 102/203 (50.25%), Postives = 135/203 (66.50%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGE-PIPTNKRHAAAKIFSHSDVVAEE-PWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            P+WN+DGSST Q+ G +S++ L P A+F+DPFR+  N LV+C+++    E P  TN RH   +I    D+V+ + PW+G+EQEYTL+  D   P                    AD+A+GRDIV++HY+ACLYAG+ I+G N EVMP QWEFQ+GP  GIS GD LWVAR+IL R+ E  GV+ +FDP PI G+WNGAG H N
Sbjct:   58 PEWNFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCESFQVQFEGPAETNLRHTCKRIM---DMVSNQHPWFGMEQEYTLMGTDGH-PFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHYRACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTN 256          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA1_DROME (Glutamine synthetase 1, mitochondrial OS=Drosophila melanogaster GN=Gs1 PE=2 SV=3)

HSP 1 Score: 208.379 bits (529), Expect = 2.386e-53
Identity = 107/203 (52.71%), Postives = 137/203 (67.49%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRG-NNILVMCDAYTPAGEPIPTNKRHA-AAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            P W YDGSST QA GE+S+  L P+AI++DPF+ G N+++V+CD Y+  G+P  +NKR A  A I   SD   +EPW+GIEQEYTLL  D + P                    AD+ + RD+V++H  ACLYAGI+ +G N EVMP QWEFQ+GPA GI A D LWV+RYIL+RI E  GVV++FDP P++G WNGAGAH N
Sbjct:   94 PDWQYDGSSTYQAHGENSDTTLKPRAIYRDPFKPGKNDVIVLCDTYSADGKPTASNKRAAFQAAIDLISD---QEPWFGIEQEYTLLDVDGR-PFGWPENGFPAPQGPYYCGVGADRVYARDLVEAHVVACLYAGIDFAGTNAEVMPAQWEFQIGPA-GIKACDDLWVSRYILQRIAEEYGVVVTFDPKPMEGQWNGAGAHTN 291          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_FUSSH (Glutamine synthetase OS=Fusarium solani subsp. phaseoli GN=GLN1 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.547e-52
Identity = 104/202 (51.49%), Postives = 126/202 (62.38%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAE-EPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            P WN+DGSST QAPG++S+V L P A++ DPFR   NI+V+ + +   G P   N RH   K+    D  AE EPW+G+EQEYTLL  D + P                      K   RDIV++HYKACLYAGI ISG N EVMP QWE+QVGP +GI  GDQLWV+R+ L RITE  G  +S  P PI GDWNGAG H+N
Sbjct:   57 PVWNFDGSSTNQAPGDNSDVYLRPCAVYPDPFRGSPNIIVLAECWNAGGTPNKFNFRHDCVKVM---DTYAEDEPWFGLEQEYTLLGPDNR-PYGWPTGGFPAPQGEYYCGVGTGKVVQRDIVEAHYKACLYAGIQISGTNAEVMPAQWEYQVGPCLGIEMGDQLWVSRFFLARITEEFGAKVSLHPKPIAGDWNGAGLHSN 254          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_CRYNE (Glutamine synthetase OS=Cryptococcus neoformans GN=GLN1 PE=2 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 1.547e-52
Identity = 102/203 (50.25%), Postives = 127/203 (62.56%), Query Frame = 3
Query:    6 KWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVK---WPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            +WN+DGSST QAP ++S+V L P AIFKDPFR G NILV+C+ Y   G P  +N R    K+   +     EPW+G+EQEYTL   D +   WP                    A K + RD +++HY+ACLYAGI ISGIN EVMP QWEFQVGP  GI  GD LW+AR++L RI E  G+  S  P P++GDWNGAG H+N
Sbjct:   57 EWNFDGSSTNQAPADNSDVFLRPVAIFKDPFRGGANILVLCECYDNDGTPNKSNYRAHCKKVMDAAKDT--EPWFGLEQEYTLFDADGQVFGWP----KNGFPGPQGPYYCGVGAGKVFARDFIEAHYRACLYAGIKISGINAEVMPSQWEFQVGPCTGIEMGDHLWMARFLLLRIGEEWGITPSLHPKPLKGDWNGAGCHSN 253          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_MIMIV (Putative glutamine synthetase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R565 PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 6.498e-51
Identity = 101/202 (50.00%), Postives = 125/202 (61.88%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRG-NNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            P WNYDGSST QA G  SEV LYP+ I++ PFRR  N ++V+CD Y   G P+ TN RH A  IF       E+PWYG+EQEY + +KD   P+                   +  A+GR I D H +ACLYAGI ISG N EV PGQ EFQ+GP  GI A DQLW+AR+ILE+I+E     + + P P+QGDWNG+G H N
Sbjct:   53 PVWNYDGSSTNQANGSSSEVFLYPRNIYRCPFRRNVNGVIVICDTYDVNGVPLETNHRHNANIIFEKYQ--NEKPWYGLEQEYFIFRKDTNQPIGMEYASKQGQYYCSVG---SQNAYGRRISDEHMEACLYAGIKISGTNLEVAPGQHEFQIGPVEGIDAADQLWIARFILEKISEHYDRYIVYHPKPLQGDWNGSGCHTN 249          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_CAEEL (Probable glutamine synthetase OS=Caenorhabditis elegans GN=gln-2 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.108e-50
Identity = 99/203 (48.77%), Postives = 126/203 (62.07%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXP--IQGDWNGAGAHAN 605
            P WNYDGSSTGQA G DS+  L P A + DPF  G N LVMCD      +P  T+ R A A+I    ++    PW+G+EQEY ++ +D + PL                   AD+A+GR++V++HY+ACL+AG+NI G N EV PGQWEFQ+G   GI  GDQLW++RYIL R+ E  GV +S DP P    GDWNGAG H N
Sbjct:   62 PIWNYDGSSTGQAKGRDSDRYLRPVAAYPDPFLGGGNKLVMCDTLDHQMQPTATSHRQACAEIMH--EIRDTRPWFGMEQEYLIVDRD-EHPLGWPKHGFPDPQGKYYCSVGADRAFGREVVETHYRACLHAGLNIFGTNAEVTPGQWEFQIGTCEGIDMGDQLWMSRYILHRVAEQFGVCVSLDPKPKVTMGDWNGAGCHTN 261          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_XENLA (Glutamine synthetase OS=Xenopus laevis GN=glul PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.225e-49
Identity = 100/201 (49.75%), Postives = 121/201 (60.20%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            P+WN+DGSST QA G +S++ L P  +F+DPF    N LVMC+      +   TN RH   KI     V    PW+G+EQEYTLL  +   P                    ADK +GRD+V+SHYKACLYAGI I G N EVMP QWEFQVGP  GI  GD LW+AR+IL R+ E  GVV + DP P+ G+WNGAG H N
Sbjct:   58 PEWNFDGSSTHQAEGSNSDMYLIPVQMFRDPFCLDPNKLVMCEVLKYNRKSAETNLRHTCKKIMEM--VNDHRPWFGMEQEYTLLGINGH-PYGWPENGFPGPQGPYYCGVGADKVYGRDVVESHYKACLYAGIKICGTNAEVMPSQWEFQVGPCEGIDMGDHLWMARFILHRVCEDFGVVATLDPKPMTGNWNGAGCHTN 255          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_GIBFU (Glutamine synthetase OS=Gibberella fujikuroi GN=GLN1 PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.942e-48
Identity = 97/202 (48.02%), Postives = 125/202 (61.88%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF-SHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            P WN+DGSST QAPG++S+V L P A++ DPFR   NI+V+ + +   G P   N RH   K+  +++D   +EP +G+EQEYTLL  D + P                      K   RDIV++HYKACLYAGI ISG N EVMP QWE+QVGP  GI+ GDQLW++R+ L R+ E  G  +S  P PI GDWNG G H+N
Sbjct:   55 PVWNFDGSSTNQAPGDNSDVYLRPCAVYPDPFRGSPNIIVLAECWNADGTPNKYNFRHDCVKVMDTYAD---DEPLFGLEQEYTLLGSDNR-PYGWPAGGFPAPQGEYYCGVGTGKVVQRDIVEAHYKACLYAGIQISGTNAEVMPAQWEYQVGPCTGIAMGDQLWISRFFLHRVAEEFGAKVSLHPKPIAGDWNG-GLHSN 251          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_CRIGR (Glutamine synthetase OS=Cricetulus griseus GN=GLUL PE=2 SV=4)

HSP 1 Score: 189.889 bits (481), Expect = 8.782e-48
Identity = 94/202 (46.53%), Postives = 126/202 (62.38%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEE-PWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            P+WN+DGSST Q+   +S++ L P A+F+DPFR+  N LV C+ +    +P  TN RH   +I    D+V+ + PW+G+EQEYTLL  D   P                    ADKA+ RDI+++HY+ACLYAG+ I+G   EV   QWEFQ+GP  GI  GD LWVAR+IL R+ +  GV+ +FD  PI G+WNGAG H N
Sbjct:   58 PEWNFDGSSTFQSESSNSDMYLSPVAMFRDPFRKEPNKLVFCEVFKYNQKPAETNLRHTCKRIM---DMVSNQHPWFGMEQEYTLLGTDGH-PFGWPSDGFPGPQGLYYCGVGADKAYRRDIMEAHYRACLYAGVKITGTYAEVKHAQWEFQIGPCEGIRMGDHLWVARFILHRVCKDFGVIATFDSKPIPGNWNGAGCHTN 255          
The following BLAST results are available for this feature:
BLAST of CF417291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA_ACOCA1.071e-5350.00Glutamine synthetase OS=Acomys cahirinus GN=GLUL P... [more]
GLNA_MACFA1.399e-5350.25Glutamine synthetase OS=Macaca fascicularis GN=GLU... [more]
GLNA1_DROME2.386e-5352.71Glutamine synthetase 1, mitochondrial OS=Drosophil... [more]
GLNA_FUSSH1.547e-5251.49Glutamine synthetase OS=Fusarium solani subsp. pha... [more]
GLNA_CRYNE1.547e-5250.25Glutamine synthetase OS=Cryptococcus neoformans GN... [more]
GLNA_MIMIV6.498e-5150.00Putative glutamine synthetase OS=Acanthamoeba poly... [more]
GLNA_CAEEL1.108e-5048.77Probable glutamine synthetase OS=Caenorhabditis el... [more]
GLNA_XENLA1.225e-4949.75Glutamine synthetase OS=Xenopus laevis GN=glul PE=... [more]
GLNA_GIBFU3.942e-4848.02Glutamine synthetase OS=Gibberella fujikuroi GN=GL... [more]
GLNA_CRIGR8.782e-4846.53Glutamine synthetase OS=Cricetulus griseus GN=GLUL... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-221 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417291 ID=CF417291; Name=CF417291; organism=Citrus sinensis; type=EST; length=619bp
TGCCTAAGTGGAATTATGATGGTTCCAGCACAGGCCAAGCACCTGGAGAA
GATAGTGAAGTGATCCTCTATCCTCAAGCTATTTTCAAGGATCCATTCAG
GAGAGGCAACAATATTCTTGTTATGTGTGATGCTTACACTCCTGCGGGGG
AACCAATTCCAACAAACAAAAGACATGCAGCTGCCAAGATTTTCAGCCAT
TCTGACGTTGTGGCTGAAGAACCATGGTATGGTATTGAGCAGGAATACAC
CTTACTGCAGAAGGATGTTAAATGGCCTCTTGGCTGGCCCATCGGTGGTT
ATCCTGGGCCTCAGGGACCATACTACTGTGGTGTTGGTGCTGACAAAGCT
TGGGGGCGCGACATTGTAGACTCCCATTACAAGGCCTGTCTATATGCAGG
AATCAACATCAGTGGCATCAATGGAGAAGTCATGCCGGGGCAGTGGGAGT
TCCAAGTTGGTCCCGCTGTTGGAATTTCTGCTGGAGATCAGTTGTGGGTT
GCCCGCTATATTTTAGAGAGGATTACAGAGATTGCTGGAGTTGTGCTTTC
TTTCGATCCCNAGCCAATTCAGGGTGACTGGAATGGAGCTGGTGCTCACG
CAAATTTACAGCACCAAGT
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