CF417291

Overview
NameCF417291
Unique NameCF417291
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA2_CHLRE (Glutamine synthetase, chloroplastic OS=Chlamydomonas reinhardtii GN=GLN2 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.187e-44
Identity = 87/202 (43.07%), Postives = 124/202 (61.39%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQ-GDWNGAGAHAN 605
            P W++DGSSTGQA G +S+ IL P  +  DP R   ++LVMC+ + P G+P  TN R    +I     V AE+ WYG EQEYT+L K                         A+ A+GR + ++H +AC+ AG+ ISGIN EVMPGQWE+Q+GP   ++ GD++ ++R++L R+ E  G+V +F+P P++ GDWNG GAH N
Sbjct:   77 PDWSFDGSSTGQAEGNNSDCILRPVRVVTDPIRGAPHVLVMCEVFAPDGKPHSTNTRAKLREIIDDK-VTAEDCWYGFEQEYTMLAKTSGHIYGWPAGGFPAPQGPFYCGVGAESAFGRPLAEAHMEACMKAGLVISGINAEVMPGQWEYQIGPVGPLALGDEVMLSRWLLHRLGEDFGIVSTFNPKPVRTGDWNGTGAHTN 277          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA2_STRVR (Glutamine synthetase 2 OS=Streptomyces viridochromogenes GN=glnII PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.714e-43
Identity = 91/201 (45.27%), Postives = 116/201 (57.71%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            P W +DGSST QA G  S+ +L P     DP R G++ILV+C+       P  +N R A A++       A+EP +GIEQEYT  Q    +PL                   AD+ +GRD+V++H   CL AG+ ISGIN EVMPGQWEFQVGP   +   D LWVAR++L R  E   V  + DP P++GDWNGAGAH N
Sbjct:   37 PIWGFDGSSTNQAEGHSSDCVLKPVFTCPDPIRGGDDILVLCEVLNIDLTPHASNTRAALAEVAER--FAAQEPIFGIEQEYTFFQDG--YPLGFPKGGFPAPQGGYYCGVGADEIFGRDVVEAHLDNCLKAGLAISGINAEVMPGQWEFQVGPVSPLEVSDHLWVARWLLYRTAEDFDVAATLDPKPVKGDWNGAGAHTN 233          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA2_STRHY (Glutamine synthetase 2 OS=Streptomyces hygroscopicus GN=glnB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.951e-40
Identity = 87/202 (43.07%), Postives = 113/202 (55.94%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXX-ADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            P+W +DGSST QA G  S+++L P     DP R G+++LV+C+       P P+N R     +        +EP +GIEQEYT L+ D   PL                    AD  +GR+IV+ H   CL AG+ +SGIN EVMPGQWEFQVG    +   D +WVAR++L R+ E  GV  S D  P +GDWNGAGAH N
Sbjct:   33 PRWGFDGSSTNQAEGHASDLVLEPVFSCPDPIRGGDHLLVLCEVLHTDLTPHPSNTRALLRPVAER--FAGQEPIFGIEQEYTFLKGDR--PLGFPEGGGYPAPQADYYCGVGADAIFGREIVEKHLDLCLAAGLGLSGINAEVMPGQWEFQVGALPPLEVSDHMWVARWLLHRVAEEFGVTASLDAKPAKGDWNGAGAHTN 230          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA_DUNSA (Glutamine synthetase (Fragment) OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.168e-38
Identity = 68/135 (50.37%), Postives = 91/135 (67.41%), Query Frame = 3
Query:  213 AEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHANLQHQ 617
            A+EPW+GIEQEYTLL    KWPL                   A ++ GRDI + HY+ CL+AGI ISG+NGEV+P QWE+QVGP  GI+ GDQ+W++RY++ R+ E+  V ++FDP PI GDWNG+G H N  ++
Sbjct:    2 AQEPWFGIEQEYTLLNSVTKWPLGWPKGGYPAGQGPYYCSVGAGRSIGRDIPEVHYRCCLHAGIQISGVNGEVLPSQWEYQVGPVEGIAMGDQMWMSRYLMYRVAELFNVEVTFDPKPIPGDWNGSGGHVNFSNR 136          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA2_FRAAL (Glutamine synthetase 2 OS=Frankia alni GN=glnII PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.089e-37
Identity = 88/202 (43.56%), Postives = 112/202 (55.45%), Query Frame = 3
Query:    9 WNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFS-HSDVVAEEPWYGIEQEYTLLQ--KDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPIQGDWNGAGAHAN 605
            W +DGSST QAPG +S+ +L P     DP R G+N LV+C+       P PTN R AA  +   ++D+    P +GIEQEYT  +  +   WP                      K  GR IV+ H +ACL AG+ I G N EVM GQWEFQ+G     + GDQ+W+ R++L RI E  GV +SF   PI GDWNGAGAH N
Sbjct:   35 WGFDGSSTNQAPGSNSDCVLRPVFETPDPIRGGDNRLVLCEVQLTDFTP-PTNTRAAALGVAERYADM---SPMFGIEQEYTFFKDGRPYGWP----EVGYPAPQGPYYCGVGGSKMPGRQIVERHTQACLDAGLAIEGTNAEVMMGQWEFQIGVLPAPAIGDQIWLGRWLLHRIAEDYGVEVSFAAKPIPGDWNGAGAHTN 228          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA2_BRAJA (Glutamine synthetase 2 OS=Bradyrhizobium japonicum GN=glnII PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 8.258e-30
Identity = 80/205 (39.02%), Postives = 106/205 (51.71%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGE-PIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQ--KDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPI-QGDWNGAGAHAN 605
            P W +DGSST QA G  S+ +L P A+F D  R  N +LVMC+   P G+ P  +NKR   A I   +       W+G EQEY   +  + + +P                     D A  R IV+ H   CL AGIN  GIN EV  GQWEFQ+       A D++W+ARY++ R+TE  G+ + F   P+   DWNG+G HAN
Sbjct:   39 PLWGFDGSSTQQAEGHSSDCVLKPVAVFPDAART-NGVLVMCEVMMPDGKTPHASNKR---ATILDDAGA-----WFGFEQEYFFYKDGRPLGFPTSGYPAPQGPYYTGVGFSNVGDVA--RKIVEEHLDLCLAAGINHEGINAEVAKGQWEFQIFGKGSKKAADEMWMARYLMLRLTEKYGIDIEFHCKPLGDTDWNGSGMHAN 232          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA2_RHILP (Glutamine synthetase 2 OS=Rhizobium leguminosarum bv. phaseoli GN=glnII PE=1 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 6.991e-29
Identity = 80/203 (39.41%), Postives = 102/203 (50.25%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKA-WGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPI-QGDWNGAGAHAN 605
            P W +DGSST QA G  S+ +L P AI+ DP R  N  LVMC+   P G    +N R   A I    D      W+G EQEY   Q     PL                   ++     R+IV+ H   CL AGIN  GIN EV  GQWEFQ+       A DQ+W+ARY+L+R+TE  G+ + +   P+   DWNG+G H N
Sbjct:   39 PLWGFDGSSTMQAEGS-SDCVLKPVAIYPDPART-NGALVMCEVMMPDGHAHASNAR---ATILDDEDA-----WFGFEQEYFFYQNGR--PLGFPEQGYPAPQPYYTGVGYSNVGDVAREIVEEHLDLCLAAGINHEGINAEVAKGQWEFQIFGKGSKKAADQIWMARYLLQRLTEKYGIDIEYHCKPLGDTDWNGSGMHCN 229          
BLAST of CF417291 vs. ExPASy Swiss-Prot
Match: GLNA2_RHIME (Glutamine synthetase 2 OS=Rhizobium meliloti GN=glnII PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.937e-27
Identity = 78/205 (38.05%), Postives = 100/205 (48.78%), Query Frame = 3
Query:    3 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGE-PIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQ--KDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPXPI-QGDWNGAGAHAN 605
            P W +DGSST QA G  S+ +L P  ++ DP R  N  LVMC+   P  E P  +N R              E  W+G EQEY   +  + + +P                     D A  R IV+ H   CL AGIN  GIN EV  GQWEFQ+       A D++ VARY+L R+TE  G+ + F   P+   DWNG+G HAN
Sbjct:   39 PLWGFDGSSTLQAEGRTSDCVLKPVTVYPDPVRT-NGALVMCEVMMPDAETPHASNTRATVLD--------DEGAWFGFEQEYFFYKNGRPLGFPEQGYPAPQGPYYTGVGYKNVGDVA--RQIVEEHLDICLAAGINHEGINAEVAKGQWEFQIFGKGSKKAADEVCVARYLLVRLTEKYGIDVEFHCKPLGDTDWNGSGMHAN 232          
The following BLAST results are available for this feature:
BLAST of CF417291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA2_CHLRE1.187e-4443.07Glutamine synthetase, chloroplastic OS=Chlamydomon... [more]
GLNA2_STRVR1.714e-4345.27Glutamine synthetase 2 OS=Streptomyces viridochrom... [more]
GLNA2_STRHY3.951e-4043.07Glutamine synthetase 2 OS=Streptomyces hygroscopic... [more]
GLNA_DUNSA2.168e-3850.37Glutamine synthetase (Fragment) OS=Dunaliella sali... [more]
GLNA2_FRAAL4.089e-3743.56Glutamine synthetase 2 OS=Frankia alni GN=glnII PE... [more]
GLNA2_BRAJA8.258e-3039.02Glutamine synthetase 2 OS=Bradyrhizobium japonicum... [more]
GLNA2_RHILP6.991e-2939.41Glutamine synthetase 2 OS=Rhizobium leguminosarum ... [more]
GLNA2_RHIME2.937e-2738.05Glutamine synthetase 2 OS=Rhizobium meliloti GN=gl... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-221 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417291 ID=CF417291; Name=CF417291; organism=Citrus sinensis; type=EST; length=619bp
TGCCTAAGTGGAATTATGATGGTTCCAGCACAGGCCAAGCACCTGGAGAA
GATAGTGAAGTGATCCTCTATCCTCAAGCTATTTTCAAGGATCCATTCAG
GAGAGGCAACAATATTCTTGTTATGTGTGATGCTTACACTCCTGCGGGGG
AACCAATTCCAACAAACAAAAGACATGCAGCTGCCAAGATTTTCAGCCAT
TCTGACGTTGTGGCTGAAGAACCATGGTATGGTATTGAGCAGGAATACAC
CTTACTGCAGAAGGATGTTAAATGGCCTCTTGGCTGGCCCATCGGTGGTT
ATCCTGGGCCTCAGGGACCATACTACTGTGGTGTTGGTGCTGACAAAGCT
TGGGGGCGCGACATTGTAGACTCCCATTACAAGGCCTGTCTATATGCAGG
AATCAACATCAGTGGCATCAATGGAGAAGTCATGCCGGGGCAGTGGGAGT
TCCAAGTTGGTCCCGCTGTTGGAATTTCTGCTGGAGATCAGTTGTGGGTT
GCCCGCTATATTTTAGAGAGGATTACAGAGATTGCTGGAGTTGTGCTTTC
TTTCGATCCCNAGCCAATTCAGGGTGACTGGAATGGAGCTGGTGCTCACG
CAAATTTACAGCACCAAGT
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