CF417306

Overview
NameCF417306
Unique NameCF417306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 2.836e-58
Identity = 104/114 (91.23%), Postives = 111/114 (97.37%), Query Frame = -1 
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            IHAQSILAIWACQV+LMGA+EGYR+AGGPLGEVTDP+YPGG+FDPLGLADDP+AFAELKVKEIKNGRLAMFSMFG FVQAIV GKGP+ENLADHLADPVNNNAWAYA NFVPGK
Sbjct:  165 IHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278
[Close]
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 3.704e-58
Identity = 107/114 (93.86%), Postives = 110/114 (96.49%), Query Frame = -1 
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            +HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFG FVQAIV GKGPLENLADHLADPVNNNAWA+A NFVPGK
Sbjct:  152 VHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
[Close]
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 3.704e-58
Identity = 107/114 (93.86%), Postives = 110/114 (96.49%), Query Frame = -1 
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            +HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFG FVQAIV GKGPLENLADHLADPVNNNAWA+A NFVPGK
Sbjct:  152 VHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
[Close]
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 3.704e-58
Identity = 107/114 (93.86%), Postives = 110/114 (96.49%), Query Frame = -1 
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            +HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFG FVQAIV GKGPLENLADHLADPVNNNAWA+A NFVPGK
Sbjct:  152 VHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
[Close]
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 3.704e-58
Identity = 106/114 (92.98%), Postives = 110/114 (96.49%), Query Frame = -1 
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            +HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFG FVQAIV GKGPLENLADHLADPVNNNAW+YA NFVPGK
Sbjct:  153 VHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266
[Close]
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 3.704e-58
Identity = 107/113 (94.69%), Postives = 109/113 (96.46%), Query Frame = -1 
Query:  177 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPG 515
            IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFG FVQAIV GKGPLENLADH+ADPVNNNAWAYA NFVPG
Sbjct:  149 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPG 261
[Close]
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 4.838e-58
Identity = 106/114 (92.98%), Postives = 110/114 (96.49%), Query Frame = -1 
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            +HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFG FVQAIV GKGPLENLADHLADPVNNNAW+YA NFVPGK
Sbjct:  154 VHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
[Close]
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 4.838e-58
Identity = 109/114 (95.61%), Postives = 109/114 (95.61%), Query Frame = -1 
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            IHAQSILAIWA QVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG FVQAIV GKGPLENLADHLADPVNNNAWAYA NFVPGK
Sbjct:  148 IHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261
[Close]
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 6.319e-58
Identity = 106/114 (92.98%), Postives = 110/114 (96.49%), Query Frame = -1 
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            +HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFG FVQAIV GKGPLENLADH+ADPVNNNAWA+A NFVPGK
Sbjct:  154 VHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267
[Close]
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 6.319e-58
Identity = 106/114 (92.98%), Postives = 110/114 (96.49%), Query Frame = -1 
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            +HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFG FVQAIV GKGPLENLADH+ADPVNNNAWA+A NFVPGK
Sbjct:  154 VHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267
The following BLAST results are available for this feature:
BLAST of CF417306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB2A_PINSY2.836e-5891.23Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB2C_SOLLC3.704e-5893.86Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2B_SOLLC3.704e-5893.86Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2A_SOLLC3.704e-5893.86Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_TOBAC3.704e-5892.98Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB21_MAIZE3.704e-5894.69Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB23_PETSP4.838e-5892.98Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB22_ORYSJ4.838e-5895.61Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2F_SOLLC6.319e-5892.98Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC6.319e-5892.98Chlorophyll a-b binding protein 3A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-236 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417306 ID=CF417306; Name=CF417306; organism=Citrus sinensis; type=EST; length=515bp
TTTTTTTTGGTTTTTTTTTTTTTTTTTTTTGAATGAAAATACAATCCCCT
CAAACTGGTAGTAGCAGTACATTACATAATTCACATGTTTTGCAAGTTGA
AATANAGTCACATCAATAACCAATCACTCTCAATTCCAATTTCCACGCTA
CTAATGNTATCAACCGAAGCTCACTTTCCGGGGACAAAGTTGGNGGCGTA
GGCCCAGGCATTGTTGTTGACAGGGTCGGCCAAGTGGTCGGCCAAGTTCT
CTAACGGNCCCTTGCCGGNGACAATGGCCTGAACGAANAAACCAAACATG
GAGAACATAGCCAACCTTCCATTCTTGATTTCCTTAACCTTGAGCTCAGC
AAAAGCCTCCGGGTCATCAGCCAAACCCAATGGATCAAAGCTGCCACCTG
GGTACAATGGGTCAGTCACTTCACCGAGCGGCCCTCCAGCAATTCTGTAA
CCCTCAACGGCTCCCATCAAGACCACCTGGCAAGCCCAGATGGCCAAGAT
GCTCTGGGCGTGGAT
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