CF417306

Overview
NameCF417306
Unique NameCF417306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 6.319e-58
Identity = 106/114 (92.98%), Postives = 110/114 (96.49%), Query Frame = -1 
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            +HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADDPEAFAEL+VKEIKNGRLAMFSMFG FVQAIV GKGPLENLADHLADPVNNNAWA+A NFVPGK
Sbjct:  153 VHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
[Close]
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 8.252e-58
Identity = 106/114 (92.98%), Postives = 109/114 (95.61%), Query Frame = -1 
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            +HAQSILAIWACQV+LMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG FVQAIV GKGPLENLADHLADPVNNNAW +A NFVPGK
Sbjct:  154 VHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 267
[Close]
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.078e-57
Identity = 104/114 (91.23%), Postives = 110/114 (96.49%), Query Frame = -1 
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            IHAQSILAIWACQVVLMGA+EGYR+AGGPLGEV DPLYPGG+FDPLGLADDPEAFA++KVKE+KNGRLAMFSMFG FVQAIV GKGPLENLADHLADPVNNNAWAYA NFVPGK
Sbjct:  152 IHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 1.078e-57
Identity = 108/114 (94.74%), Postives = 109/114 (95.61%), Query Frame = -1 
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            IHAQSILAIWA QVVLMGAVEGYRIAGGPLGEV DPLYPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG FVQAIV GKGPLENLADHLADPVNNNAWAYA NFVPGK
Sbjct:  152 IHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.408e-57
Identity = 102/114 (89.47%), Postives = 111/114 (97.37%), Query Frame = -1 
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            IHAQSILAIWACQV+LMGA+EGYR+AGGPLGEVTDP+YPGG+FDPLGLADDP+AFA++KVKEIKNGRLAMFSMFG FVQAIV GKGP+ENLADHLADPVNNNAWAYA NFVPGK
Sbjct:  165 IHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278
[Close]
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.408e-57
Identity = 105/114 (92.11%), Postives = 109/114 (95.61%), Query Frame = -1 
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            +HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVK IKNGRLAMFSMFG FVQAIV GKGPLENLADHLADPVNNNAW+YA NFVPGK
Sbjct:  154 VHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
[Close]
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.408e-57
Identity = 106/114 (92.98%), Postives = 109/114 (95.61%), Query Frame = -1 
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            +HAQSILAIWACQVVLMGAVEGYR+AG PLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFG FVQAIV GKGPLENLADHLADPVNNNAWAYA NFVPGK
Sbjct:  154 VHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
[Close]
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.408e-57
Identity = 106/114 (92.98%), Postives = 109/114 (95.61%), Query Frame = -1 
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            +HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADD EAFAELKVKEIKNGRLAMFSMFG FVQAIV GKGPLENLADHLADPVNNNAWA+A NFVPGK
Sbjct:  151 VHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264
[Close]
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 3.136e-57
Identity = 106/114 (92.98%), Postives = 109/114 (95.61%), Query Frame = -1 
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            IHAQSILAIWA QV+LMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFG FVQAIV GKGPLENLADHLA PVNNNAWAYA NFVPGK
Sbjct:  150 IHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNNAWAYATNFVPGK 263
[Close]
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 3.136e-57
Identity = 105/114 (92.11%), Postives = 109/114 (95.61%), Query Frame = -1 
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            +HAQSILAIWA QV+LMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFG FVQAIV GKGPLENLADHLADPVNNNAW+YA NFVPGK
Sbjct:  156 VHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 269
The following BLAST results are available for this feature:
BLAST of CF417306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB21_PETSP6.319e-5892.98Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2A_SPIOL8.252e-5892.98Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB29_MAIZE1.078e-5791.23Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB21_ORYSJ1.078e-5794.74Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2A_PYRPY1.408e-5789.47Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB25_TOBAC1.408e-5792.11Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB23_NICPL1.408e-5792.98Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB22_HORVU1.408e-5792.98Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB23_SOYBN3.136e-5792.98Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB22_PEA3.136e-5792.11Chlorophyll a-b binding protein AB80, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-236 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417306 ID=CF417306; Name=CF417306; organism=Citrus sinensis; type=EST; length=515bp
TTTTTTTTGGTTTTTTTTTTTTTTTTTTTTGAATGAAAATACAATCCCCT
CAAACTGGTAGTAGCAGTACATTACATAATTCACATGTTTTGCAAGTTGA
AATANAGTCACATCAATAACCAATCACTCTCAATTCCAATTTCCACGCTA
CTAATGNTATCAACCGAAGCTCACTTTCCGGGGACAAAGTTGGNGGCGTA
GGCCCAGGCATTGTTGTTGACAGGGTCGGCCAAGTGGTCGGCCAAGTTCT
CTAACGGNCCCTTGCCGGNGACAATGGCCTGAACGAANAAACCAAACATG
GAGAACATAGCCAACCTTCCATTCTTGATTTCCTTAACCTTGAGCTCAGC
AAAAGCCTCCGGGTCATCAGCCAAACCCAATGGATCAAAGCTGCCACCTG
GGTACAATGGGTCAGTCACTTCACCGAGCGGCCCTCCAGCAATTCTGTAA
CCCTCAACGGCTCCCATCAAGACCACCTGGCAAGCCCAGATGGCCAAGAT
GCTCTGGGCGTGGAT
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