CF417306

Overview
NameCF417306
Unique NameCF417306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 5.181e-52
Identity = 96/114 (84.21%), Postives = 103/114 (90.35%), Query Frame = -1
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            IHAQSILA+WA QVVLMG +EGYR+ GGPLGE  D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG FVQAIV GKGP+ENL DH+ADPV NNAWAYA NFVPGK
Sbjct:  152 IHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265          
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 5.181e-52
Identity = 98/114 (85.96%), Postives = 102/114 (89.47%), Query Frame = -1
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            IHAQSILAIWACQVVLMG +EGYR+ GG LGE  DPL PGG+FDPLGLADDPEA AELKVKEIKNGRLAMFSMFG FVQAIV GKGP+ENL DHLADPV NNAWAYA NFVPGK
Sbjct:  153 IHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266          
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 8.837e-52
Identity = 97/114 (85.09%), Postives = 103/114 (90.35%), Query Frame = -1
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            IHAQSILAIWA QVVLMG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG FVQAIV GKGP+ENL DH+ADPV NNAWA+A NFVPGK
Sbjct:  152 IHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNFVPGK 265          
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 2.571e-51
Identity = 99/115 (86.09%), Postives = 103/115 (89.57%), Query Frame = -1
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            +HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPL    DPEAFAELKVKEIKNGRLAMFSMFG FVQAIV GKGPLENLADHLADPVNNNAWA+A NFVPGK
Sbjct:   10 VHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124          
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 4.386e-51
Identity = 94/114 (82.46%), Postives = 104/114 (91.23%), Query Frame = -1
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            IHAQSILAIWA QVVLMG VEGYR+ GGPLGE  DPLYPGG+FDPLGLADDP++FAELKVKE+KNGRLAMFSMFG FVQAIV GKGP++NL DH+ADPV NNAWA+A NFVPG+
Sbjct:  152 IHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265          
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 7.481e-51
Identity = 94/114 (82.46%), Postives = 102/114 (89.47%), Query Frame = -1
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            +HAQSILAIWA QVVLMG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFG FVQAIV GKGP+ENL DH+ADPV NNAWAYA NFVPGK
Sbjct:  150 VHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 7.481e-51
Identity = 94/114 (82.46%), Postives = 102/114 (89.47%), Query Frame = -1
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            +HAQSILAIWA QVVLMG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFG FVQAIV GKGP+ENL DH+ADPV NNAWAYA NFVPGK
Sbjct:  150 VHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 4.396e-43
Identity = 85/112 (75.89%), Postives = 93/112 (83.04%), Query Frame = -1
Query:  180 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVP 515
            IHAQ+I+A  A QVVLMG +EGYR+ GGP GE  DPLYPG SFDPLGLADDP+ FAELKVKEIKNGRLAMFS FG FVQAIV GKGP++NLADHLADP  NNA+A A  F P
Sbjct:  143 IHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254          
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.279e-42
Identity = 89/113 (78.76%), Postives = 95/113 (84.07%), Query Frame = -1
Query:  177 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPG 515
            +HAQSILAIW  +V+LMGAVEGYRIA GPLGEVTDPLYPG SFD LGLA+D EAFAELKVKE+KNGRLAMFSMFG FVQAIV  K  LENLADHL   VNNNA +   NFVPG
Sbjct:  156 VHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYPG-SFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267          
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.670e-42
Identity = 83/112 (74.11%), Postives = 92/112 (82.14%), Query Frame = -1
Query:  180 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVP 515
            IHAQ+I+A  A QVVLMG VEGYR+ GGP GE  DPLYPG +FDPLGLADDP+ FAELKVKEIKNGRLAMF+  G FVQAIV GKGP+ENL DHLA+P  NNA+AYA  F P
Sbjct:  161 IHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272          
The following BLAST results are available for this feature:
BLAST of CF417306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB23_TOBAC5.181e-5284.21Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_PINTH5.181e-5285.96Chlorophyll a-b binding protein type I, chloroplas... [more]
CB26_PETSP8.837e-5285.09Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB21_RAPSA2.571e-5186.09Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB215_PEA4.386e-5182.46Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB23_ORYSJ7.481e-5182.46Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI7.481e-5182.46Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2_CHLMO4.396e-4375.89Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO1.279e-4278.76Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_DUNSA1.670e-4274.11Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-236 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417306 ID=CF417306; Name=CF417306; organism=Citrus sinensis; type=EST; length=515bp
TTTTTTTTGGTTTTTTTTTTTTTTTTTTTTGAATGAAAATACAATCCCCT
CAAACTGGTAGTAGCAGTACATTACATAATTCACATGTTTTGCAAGTTGA
AATANAGTCACATCAATAACCAATCACTCTCAATTCCAATTTCCACGCTA
CTAATGNTATCAACCGAAGCTCACTTTCCGGGGACAAAGTTGGNGGCGTA
GGCCCAGGCATTGTTGTTGACAGGGTCGGCCAAGTGGTCGGCCAAGTTCT
CTAACGGNCCCTTGCCGGNGACAATGGCCTGAACGAANAAACCAAACATG
GAGAACATAGCCAACCTTCCATTCTTGATTTCCTTAACCTTGAGCTCAGC
AAAAGCCTCCGGGTCATCAGCCAAACCCAATGGATCAAAGCTGCCACCTG
GGTACAATGGGTCAGTCACTTCACCGAGCGGCCCTCCAGCAATTCTGTAA
CCCTCAACGGCTCCCATCAAGACCACCTGGCAAGCCCAGATGGCCAAGAT
GCTCTGGGCGTGGAT
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