CF417306
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 5.181e-52 Identity = 96/114 (84.21%), Postives = 103/114 (90.35%), Query Frame = -1 Query: 174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515 IHAQSILA+WA QVVLMG +EGYR+ GGPLGE D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG FVQAIV GKGP+ENL DH+ADPV NNAWAYA NFVPGK Sbjct: 152 IHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 5.181e-52 Identity = 98/114 (85.96%), Postives = 102/114 (89.47%), Query Frame = -1 Query: 174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515 IHAQSILAIWACQVVLMG +EGYR+ GG LGE DPL PGG+FDPLGLADDPEA AELKVKEIKNGRLAMFSMFG FVQAIV GKGP+ENL DHLADPV NNAWAYA NFVPGK Sbjct: 153 IHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1) HSP 1 Score: 202.601 bits (514), Expect = 8.837e-52 Identity = 97/114 (85.09%), Postives = 103/114 (90.35%), Query Frame = -1 Query: 174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515 IHAQSILAIWA QVVLMG VEGYR+ GGPLGE D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG FVQAIV GKGP+ENL DH+ADPV NNAWA+A NFVPGK Sbjct: 152 IHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNFVPGK 265
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 2.571e-51 Identity = 99/115 (86.09%), Postives = 103/115 (89.57%), Query Frame = -1 Query: 174 IHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515 +HAQSILAIWA QV+LMGAVEGYR+AG GPLGE D LYPGGSFDPL DPEAFAELKVKEIKNGRLAMFSMFG FVQAIV GKGPLENLADHLADPVNNNAWA+A NFVPGK Sbjct: 10 VHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1) HSP 1 Score: 200.29 bits (508), Expect = 4.386e-51 Identity = 94/114 (82.46%), Postives = 104/114 (91.23%), Query Frame = -1 Query: 174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515 IHAQSILAIWA QVVLMG VEGYR+ GGPLGE DPLYPGG+FDPLGLADDP++FAELKVKE+KNGRLAMFSMFG FVQAIV GKGP++NL DH+ADPV NNAWA+A NFVPG+ Sbjct: 152 IHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1) HSP 1 Score: 199.519 bits (506), Expect = 7.481e-51 Identity = 94/114 (82.46%), Postives = 102/114 (89.47%), Query Frame = -1 Query: 174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515 +HAQSILAIWA QVVLMG VEGYR+ GGPLGE D +YPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFG FVQAIV GKGP+ENL DH+ADPV NNAWAYA NFVPGK Sbjct: 150 VHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1) HSP 1 Score: 199.519 bits (506), Expect = 7.481e-51 Identity = 94/114 (82.46%), Postives = 102/114 (89.47%), Query Frame = -1 Query: 174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515 +HAQSILAIWA QVVLMG VEGYR+ GGPLGE D +YPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFG FVQAIV GKGP+ENL DH+ADPV NNAWAYA NFVPGK Sbjct: 150 VHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 4.396e-43 Identity = 85/112 (75.89%), Postives = 93/112 (83.04%), Query Frame = -1 Query: 180 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVP 515 IHAQ+I+A A QVVLMG +EGYR+ GGP GE DPLYPG SFDPLGLADDP+ FAELKVKEIKNGRLAMFS FG FVQAIV GKGP++NLADHLADP NNA+A A F P Sbjct: 143 IHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 1.279e-42 Identity = 89/113 (78.76%), Postives = 95/113 (84.07%), Query Frame = -1 Query: 177 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPG 515 +HAQSILAIW +V+LMGAVEGYRIA GPLGEVTDPLYPG SFD LGLA+D EAFAELKVKE+KNGRLAMFSMFG FVQAIV K LENLADHL VNNNA + NFVPG Sbjct: 156 VHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYPG-SFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 1.670e-42 Identity = 83/112 (74.11%), Postives = 92/112 (82.14%), Query Frame = -1 Query: 180 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVP 515 IHAQ+I+A A QVVLMG VEGYR+ GGP GE DPLYPG +FDPLGLADDP+ FAELKVKEIKNGRLAMF+ G FVQAIV GKGP+ENL DHLA+P NNA+AYA F P Sbjct: 161 IHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272 The following BLAST results are available for this feature:
BLAST of CF417306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417306 ID=CF417306; Name=CF417306; organism=Citrus sinensis; type=EST; length=515bpback to top |