CF417306
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 7.067e-17 Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = -1 Query: 210 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFV-QAIVXGKGPLENLADHLADPVNNN 404 YPGG+FDPLG + DP F ELKVKEIKNGRLA+ ++ G V Q+ G GPLENLA HLADP +NN Sbjct: 168 YPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 3.283e-14 Identity = 46/93 (49.46%), Postives = 60/93 (64.52%), Query Frame = -1 Query: 216 IWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVN 491 IW +V+++G +E R A + LYPGG F DPLGLA DPE A+L++ EIK+ RLAM + G VQA GKGPL N A HL+DP++ Sbjct: 192 IWI-EVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLH 280
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.128e-13 Identity = 45/93 (48.39%), Postives = 58/93 (62.37%), Query Frame = -1 Query: 216 IWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVN 491 IW +V+++G +E R A + LYPGG F DPLGLA DP A+L++ EIK+ RLAM G VQA GKGPL N A HL+DP++ Sbjct: 189 IWI-EVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLH 277
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.168e-11 Identity = 46/106 (43.40%), Postives = 58/106 (54.72%), Query Frame = -1 Query: 222 IWACQVVLMGAVEGYRIAG--GPLGEVTDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADP 491 ++ ++VL+G EG R A P TDP+ YPGG FDPLG P EL+ KEIKNGRLAM ++ G + Q I G GP++NL HLADP Sbjct: 153 LFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.525e-11 Identity = 46/106 (43.40%), Postives = 58/106 (54.72%), Query Frame = -1 Query: 222 IWACQVVLMGAVEGYRIAG--GPLGEVTDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADP 491 ++ ++VL+G EG R A P TDP+ YPGG FDPLG P EL+ KEIKNGRLAM ++ G + Q I G GP++NL HLADP Sbjct: 153 LFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 2.601e-11 Identity = 39/73 (53.42%), Postives = 44/73 (60.27%), Query Frame = -1 Query: 213 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNN 431 P GEV YPGG F+PL A EA K KE+ NGRLAM + G VQ V GKGP ENL HL+DP +N Sbjct: 179 PKGEVG---YPGGIFNPLNFAPTQEA----KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHN 244
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 7.568e-11 Identity = 37/73 (50.68%), Postives = 44/73 (60.27%), Query Frame = -1 Query: 213 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNN 431 P GEV YPGG F+PL A EA K KEI NGRLAM + G +Q V GKGP +NL H++DP +N Sbjct: 178 PAGEVG---YPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHN 243 The following BLAST results are available for this feature:
BLAST of CF417306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417306 ID=CF417306; Name=CF417306; organism=Citrus sinensis; type=EST; length=515bpback to top |