CF417306

Overview
NameCF417306
Unique NameCF417306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.067e-17
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = -1
Query:  210 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFV-QAIVXGKGPLENLADHLADPVNNN 404
            YPGG+FDPLG + DP  F ELKVKEIKNGRLA+ ++ G  V Q+   G GPLENLA HLADP +NN
Sbjct:  168 YPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233          
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.283e-14
Identity = 46/93 (49.46%), Postives = 60/93 (64.52%), Query Frame = -1
Query:  216 IWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVN 491
            IW  +V+++G +E  R A     +    LYPGG F DPLGLA DPE  A+L++ EIK+ RLAM +  G  VQA   GKGPL N A HL+DP++
Sbjct:  192 IWI-EVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLH 280          
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.128e-13
Identity = 45/93 (48.39%), Postives = 58/93 (62.37%), Query Frame = -1
Query:  216 IWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVN 491
            IW  +V+++G +E  R A     +    LYPGG F DPLGLA DP   A+L++ EIK+ RLAM    G  VQA   GKGPL N A HL+DP++
Sbjct:  189 IWI-EVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLH 277          
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.168e-11
Identity = 46/106 (43.40%), Postives = 58/106 (54.72%), Query Frame = -1
Query:  222 IWACQVVLMGAVEGYRIAG--GPLGEVTDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADP 491
            ++  ++VL+G  EG R A    P    TDP+            YPGG  FDPLG     P    EL+ KEIKNGRLAM ++ G + Q I  G GP++NL  HLADP
Sbjct:  153 LFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.525e-11
Identity = 46/106 (43.40%), Postives = 58/106 (54.72%), Query Frame = -1
Query:  222 IWACQVVLMGAVEGYRIAG--GPLGEVTDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADP 491
            ++  ++VL+G  EG R A    P    TDP+            YPGG  FDPLG     P    EL+ KEIKNGRLAM ++ G + Q I  G GP++NL  HLADP
Sbjct:  153 LFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.601e-11
Identity = 39/73 (53.42%), Postives = 44/73 (60.27%), Query Frame = -1
Query:  213 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNN 431
            P GEV    YPGG F+PL  A   EA    K KE+ NGRLAM +  G  VQ  V GKGP ENL  HL+DP +N
Sbjct:  179 PKGEVG---YPGGIFNPLNFAPTQEA----KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHN 244          
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.568e-11
Identity = 37/73 (50.68%), Postives = 44/73 (60.27%), Query Frame = -1
Query:  213 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNN 431
            P GEV    YPGG F+PL  A   EA    K KEI NGRLAM +  G  +Q  V GKGP +NL  H++DP +N
Sbjct:  178 PAGEVG---YPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHN 243          
The following BLAST results are available for this feature:
BLAST of CF417306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB11_SOLLC7.067e-1765.15Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB4A_ARATH3.283e-1449.46Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH2.128e-1348.39Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB12_PETHY1.168e-1143.40Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC1.525e-1143.40Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_ARATH2.601e-1153.42Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA7.568e-1150.68Chlorophyll a-b binding protein P4, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-236 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417306 ID=CF417306; Name=CF417306; organism=Citrus sinensis; type=EST; length=515bp
TTTTTTTTGGTTTTTTTTTTTTTTTTTTTTGAATGAAAATACAATCCCCT
CAAACTGGTAGTAGCAGTACATTACATAATTCACATGTTTTGCAAGTTGA
AATANAGTCACATCAATAACCAATCACTCTCAATTCCAATTTCCACGCTA
CTAATGNTATCAACCGAAGCTCACTTTCCGGGGACAAAGTTGGNGGCGTA
GGCCCAGGCATTGTTGTTGACAGGGTCGGCCAAGTGGTCGGCCAAGTTCT
CTAACGGNCCCTTGCCGGNGACAATGGCCTGAACGAANAAACCAAACATG
GAGAACATAGCCAACCTTCCATTCTTGATTTCCTTAACCTTGAGCTCAGC
AAAAGCCTCCGGGTCATCAGCCAAACCCAATGGATCAAAGCTGCCACCTG
GGTACAATGGGTCAGTCACTTCACCGAGCGGCCCTCCAGCAATTCTGTAA
CCCTCAACGGCTCCCATCAAGACCACCTGGCAAGCCCAGATGGCCAAGAT
GCTCTGGGCGTGGAT
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