CF417326
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SYNP2 (50S ribosomal protein L13 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplM PE=3 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 6.503e-39 Identity = 80/112 (71.43%), Postives = 91/112 (81.25%), Query Frame = 1 Query: 319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 D+ WYVVDA D+ LGRLAS +A +RGKN A YTP +D G +VIVVNAEKV V+G+K QK+YRRHSGRPGGMK ETF+QLQ RIPERIIE AV+GMLPK LGR LFT LK Sbjct: 13 DQKWYVVDAADQRLGRLASEVAKVLRGKNKAEYTPHMDTGDFVIVVNAEKVVVTGRKPEQKLYRRHSGRPGGMKVETFNQLQDRIPERIIEKAVKGMLPKNALGRRLFTKLK 124
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_CYAP7 (50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7424) GN=rplM PE=3 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 2.471e-38 Identity = 76/112 (67.86%), Postives = 91/112 (81.25%), Query Frame = 1 Query: 319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 DK WYV+DA + LGRLAS IA+ +RGKN TYTP +D G +VIV+NAEKV V+GKK QK+Y RHSGRPGGMK ETF++LQ R+PERI+E AV+GMLPK LGR+LFT LK Sbjct: 13 DKQWYVIDAAGQRLGRLASEIAMILRGKNKPTYTPHLDTGDFVIVINAEKVIVTGKKSQQKVYHRHSGRPGGMKVETFEKLQARLPERIVEKAVKGMLPKNSLGRQLFTKLK 124
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SYNY3 (50S ribosomal protein L13 OS=Synechocystis sp. (strain PCC 6803) GN=rplM PE=3 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 7.190e-38 Identity = 73/112 (65.18%), Postives = 92/112 (82.14%), Query Frame = 1 Query: 319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 D WYV+DA + LGRLA+ +A +RGKN T+TP +D G +VI++NAEK+ V+G+KR QK+YRRHSGRPGGMKEETF++LQ R+PERI+E AVRGMLPK LGR+LFT LK Sbjct: 13 DHKWYVIDAEGQRLGRLATEVATILRGKNKPTFTPHMDTGDFVIIINAEKIEVTGRKREQKLYRRHSGRPGGMKEETFEKLQVRLPERIVESAVRGMLPKNSLGRKLFTKLK 124
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_ACAM1 (50S ribosomal protein L13 OS=Acaryochloris marina (strain MBIC 11017) GN=rplM PE=3 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 2.732e-37 Identity = 76/113 (67.26%), Postives = 91/113 (80.53%), Query Frame = 1 Query: 316 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 +DK WYVVDA ++ LGRLA+ IA+ +RGKN TYTP ++ G +VIV+NAEKV V+G K QK+YRRHSGRPGGMK ETF+ LQ RIPERIIE AV+GMLPK LGR+LF LK Sbjct: 12 ADKKWYVVDAENQRLGRLATQIAMILRGKNKPTYTPFMNTGDFVIVINAEKVTVTGNKGEQKLYRRHSGRPGGMKTETFNHLQERIPERIIEKAVKGMLPKNALGRQLFRSLK 124
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SYNP6 (50S ribosomal protein L13 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplM PE=3 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 3.568e-37 Identity = 74/112 (66.07%), Postives = 91/112 (81.25%), Query Frame = 1 Query: 319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 ++ WYVVDA D+ LGRLA+ IA +RGK+ TYTP +D G +VIV+NA+KV V+G+K +QK+YRRHSGRPGGMK ETF LQ R+PERIIE AV+GMLPK LGR+LFT LK Sbjct: 13 ERNWYVVDAADQRLGRLATEIARVLRGKHKPTYTPHMDTGDFVIVINADKVTVTGRKASQKLYRRHSGRPGGMKVETFAHLQQRLPERIIEQAVKGMLPKNALGRQLFTKLK 124
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SYNE7 (50S ribosomal protein L13 OS=Synechococcus elongatus (strain PCC 7942) GN=rplM PE=3 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 3.568e-37 Identity = 74/112 (66.07%), Postives = 91/112 (81.25%), Query Frame = 1 Query: 319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 ++ WYVVDA D+ LGRLA+ IA +RGK+ TYTP +D G +VIV+NA+KV V+G+K +QK+YRRHSGRPGGMK ETF LQ R+PERIIE AV+GMLPK LGR+LFT LK Sbjct: 13 ERNWYVVDAADQRLGRLATEIARVLRGKHKPTYTPHMDTGDFVIVINADKVTVTGRKASQKLYRRHSGRPGGMKVETFAHLQQRLPERIIEQAVKGMLPKNALGRQLFTKLK 124
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_PROMS (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain AS9601) GN=rplM PE=3 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 3.021e-36 Identity = 74/112 (66.07%), Postives = 88/112 (78.57%), Query Frame = 1 Query: 319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 ++ W++VDA DK LGRLA+ IA +RGKN TYTP +D G +VIVVNAEKV V+GKK +QK+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP LGR+ F LK Sbjct: 13 ERNWFLVDAKDKTLGRLATEIATVLRGKNKPTYTPHLDTGDFVIVVNAEKVEVTGKKASQKLYRRHSGRPGGMKIEKFESLQERIPERIIEQAVKGMLPHNSLGRQQFKKLK 124
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_PROM9 (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplM PE=3 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 3.021e-36 Identity = 73/112 (65.18%), Postives = 88/112 (78.57%), Query Frame = 1 Query: 319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 ++ W++VDA DK LGRLA+ IA +RGKN T+TP +D G +VIVVNAEK+ VSGKK +QK+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP LGR+ F LK Sbjct: 13 ERNWFLVDAKDKTLGRLATEIATVLRGKNKPTFTPHLDTGDFVIVVNAEKIEVSGKKASQKLYRRHSGRPGGMKTEKFESLQERIPERIIEQAVKGMLPHNSLGRQQFKKLK 124
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SYNJB (50S ribosomal protein L13 OS=Synechococcus sp. GN=rplM PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 5.153e-36 Identity = 72/109 (66.06%), Postives = 88/109 (80.73%), Query Frame = 1 Query: 328 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 WY+VDA ++ LGRLA+ +A +RGK+ +TP +D G YVIV+NAEKV V+GKKRTQK+YRRHSGRPGGMK ETF QLQ R+PER++E AV+GMLP RLGR FT LK Sbjct: 16 WYLVDAANQRLGRLAAAVATLLRGKHKPDFTPHLDTGDYVIVINAEKVVVTGKKRTQKLYRRHSGRPGGMKVETFAQLQARLPERVVEKAVKGMLPHTRLGRRQFTKLK 124
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SYNS3 (50S ribosomal protein L13 OS=Synechococcus sp. (strain CC9311) GN=rplM PE=3 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 6.729e-36 Identity = 70/112 (62.50%), Postives = 90/112 (80.36%), Query Frame = 1 Query: 319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 D+ WY+VDA ++ LGRLA+ +A +RGKN A++TP +D G +VIVVNA+K+ VSGKK QK+YRRHSGRPGGMK ETF+ LQ R+PERI+E A++GMLP LGR+LF LK Sbjct: 13 DRQWYLVDAENQTLGRLATEVASVLRGKNKASFTPHLDTGDFVIVVNADKIRVSGKKPQQKLYRRHSGRPGGMKVETFEHLQERLPERIVEKAIKGMLPHNALGRQLFRKLK 124 The following BLAST results are available for this feature:
BLAST of CF417326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417326 ID=CF417326; Name=CF417326; organism=Citrus sinensis; type=EST; length=654bpback to top |