CF417326

Overview
NameCF417326
Unique NameCF417326
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SYNP2 (50S ribosomal protein L13 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplM PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.503e-39
Identity = 80/112 (71.43%), Postives = 91/112 (81.25%), Query Frame = 1
Query:  319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            D+ WYVVDA D+ LGRLAS +A  +RGKN A YTP +D G +VIVVNAEKV V+G+K  QK+YRRHSGRPGGMK ETF+QLQ RIPERIIE AV+GMLPK  LGR LFT LK
Sbjct:   13 DQKWYVVDAADQRLGRLASEVAKVLRGKNKAEYTPHMDTGDFVIVVNAEKVVVTGRKPEQKLYRRHSGRPGGMKVETFNQLQDRIPERIIEKAVKGMLPKNALGRRLFTKLK 124          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_CYAP7 (50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7424) GN=rplM PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.471e-38
Identity = 76/112 (67.86%), Postives = 91/112 (81.25%), Query Frame = 1
Query:  319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            DK WYV+DA  + LGRLAS IA+ +RGKN  TYTP +D G +VIV+NAEKV V+GKK  QK+Y RHSGRPGGMK ETF++LQ R+PERI+E AV+GMLPK  LGR+LFT LK
Sbjct:   13 DKQWYVIDAAGQRLGRLASEIAMILRGKNKPTYTPHLDTGDFVIVINAEKVIVTGKKSQQKVYHRHSGRPGGMKVETFEKLQARLPERIVEKAVKGMLPKNSLGRQLFTKLK 124          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SYNY3 (50S ribosomal protein L13 OS=Synechocystis sp. (strain PCC 6803) GN=rplM PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.190e-38
Identity = 73/112 (65.18%), Postives = 92/112 (82.14%), Query Frame = 1
Query:  319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            D  WYV+DA  + LGRLA+ +A  +RGKN  T+TP +D G +VI++NAEK+ V+G+KR QK+YRRHSGRPGGMKEETF++LQ R+PERI+E AVRGMLPK  LGR+LFT LK
Sbjct:   13 DHKWYVIDAEGQRLGRLATEVATILRGKNKPTFTPHMDTGDFVIIINAEKIEVTGRKREQKLYRRHSGRPGGMKEETFEKLQVRLPERIVESAVRGMLPKNSLGRKLFTKLK 124          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_ACAM1 (50S ribosomal protein L13 OS=Acaryochloris marina (strain MBIC 11017) GN=rplM PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.732e-37
Identity = 76/113 (67.26%), Postives = 91/113 (80.53%), Query Frame = 1
Query:  316 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            +DK WYVVDA ++ LGRLA+ IA+ +RGKN  TYTP ++ G +VIV+NAEKV V+G K  QK+YRRHSGRPGGMK ETF+ LQ RIPERIIE AV+GMLPK  LGR+LF  LK
Sbjct:   12 ADKKWYVVDAENQRLGRLATQIAMILRGKNKPTYTPFMNTGDFVIVINAEKVTVTGNKGEQKLYRRHSGRPGGMKTETFNHLQERIPERIIEKAVKGMLPKNALGRQLFRSLK 124          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SYNP6 (50S ribosomal protein L13 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplM PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.568e-37
Identity = 74/112 (66.07%), Postives = 91/112 (81.25%), Query Frame = 1
Query:  319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            ++ WYVVDA D+ LGRLA+ IA  +RGK+  TYTP +D G +VIV+NA+KV V+G+K +QK+YRRHSGRPGGMK ETF  LQ R+PERIIE AV+GMLPK  LGR+LFT LK
Sbjct:   13 ERNWYVVDAADQRLGRLATEIARVLRGKHKPTYTPHMDTGDFVIVINADKVTVTGRKASQKLYRRHSGRPGGMKVETFAHLQQRLPERIIEQAVKGMLPKNALGRQLFTKLK 124          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SYNE7 (50S ribosomal protein L13 OS=Synechococcus elongatus (strain PCC 7942) GN=rplM PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.568e-37
Identity = 74/112 (66.07%), Postives = 91/112 (81.25%), Query Frame = 1
Query:  319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            ++ WYVVDA D+ LGRLA+ IA  +RGK+  TYTP +D G +VIV+NA+KV V+G+K +QK+YRRHSGRPGGMK ETF  LQ R+PERIIE AV+GMLPK  LGR+LFT LK
Sbjct:   13 ERNWYVVDAADQRLGRLATEIARVLRGKHKPTYTPHMDTGDFVIVINADKVTVTGRKASQKLYRRHSGRPGGMKVETFAHLQQRLPERIIEQAVKGMLPKNALGRQLFTKLK 124          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_PROMS (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain AS9601) GN=rplM PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.021e-36
Identity = 74/112 (66.07%), Postives = 88/112 (78.57%), Query Frame = 1
Query:  319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            ++ W++VDA DK LGRLA+ IA  +RGKN  TYTP +D G +VIVVNAEKV V+GKK +QK+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP   LGR+ F  LK
Sbjct:   13 ERNWFLVDAKDKTLGRLATEIATVLRGKNKPTYTPHLDTGDFVIVVNAEKVEVTGKKASQKLYRRHSGRPGGMKIEKFESLQERIPERIIEQAVKGMLPHNSLGRQQFKKLK 124          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_PROM9 (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplM PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.021e-36
Identity = 73/112 (65.18%), Postives = 88/112 (78.57%), Query Frame = 1
Query:  319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            ++ W++VDA DK LGRLA+ IA  +RGKN  T+TP +D G +VIVVNAEK+ VSGKK +QK+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP   LGR+ F  LK
Sbjct:   13 ERNWFLVDAKDKTLGRLATEIATVLRGKNKPTFTPHLDTGDFVIVVNAEKIEVSGKKASQKLYRRHSGRPGGMKTEKFESLQERIPERIIEQAVKGMLPHNSLGRQQFKKLK 124          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SYNJB (50S ribosomal protein L13 OS=Synechococcus sp. GN=rplM PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.153e-36
Identity = 72/109 (66.06%), Postives = 88/109 (80.73%), Query Frame = 1
Query:  328 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            WY+VDA ++ LGRLA+ +A  +RGK+   +TP +D G YVIV+NAEKV V+GKKRTQK+YRRHSGRPGGMK ETF QLQ R+PER++E AV+GMLP  RLGR  FT LK
Sbjct:   16 WYLVDAANQRLGRLAAAVATLLRGKHKPDFTPHLDTGDYVIVINAEKVVVTGKKRTQKLYRRHSGRPGGMKVETFAQLQARLPERVVEKAVKGMLPHTRLGRRQFTKLK 124          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SYNS3 (50S ribosomal protein L13 OS=Synechococcus sp. (strain CC9311) GN=rplM PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.729e-36
Identity = 70/112 (62.50%), Postives = 90/112 (80.36%), Query Frame = 1
Query:  319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            D+ WY+VDA ++ LGRLA+ +A  +RGKN A++TP +D G +VIVVNA+K+ VSGKK  QK+YRRHSGRPGGMK ETF+ LQ R+PERI+E A++GMLP   LGR+LF  LK
Sbjct:   13 DRQWYLVDAENQTLGRLATEVASVLRGKNKASFTPHLDTGDFVIVVNADKIRVSGKKPQQKLYRRHSGRPGGMKVETFEHLQERLPERIVEKAIKGMLPHNALGRQLFRKLK 124          
The following BLAST results are available for this feature:
BLAST of CF417326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_SYNP26.503e-3971.4350S ribosomal protein L13 OS=Synechococcus sp. (st... [more]
RL13_CYAP72.471e-3867.8650S ribosomal protein L13 OS=Cyanothece sp. (strai... [more]
RL13_SYNY37.190e-3865.1850S ribosomal protein L13 OS=Synechocystis sp. (st... [more]
RL13_ACAM12.732e-3767.2650S ribosomal protein L13 OS=Acaryochloris marina ... [more]
RL13_SYNP63.568e-3766.0750S ribosomal protein L13 OS=Synechococcus sp. (st... [more]
RL13_SYNE73.568e-3766.0750S ribosomal protein L13 OS=Synechococcus elongat... [more]
RL13_PROMS3.021e-3666.0750S ribosomal protein L13 OS=Prochlorococcus marin... [more]
RL13_PROM93.021e-3665.1850S ribosomal protein L13 OS=Prochlorococcus marin... [more]
RL13_SYNJB5.153e-3666.0650S ribosomal protein L13 OS=Synechococcus sp. GN=... [more]
RL13_SYNS36.729e-3662.5050S ribosomal protein L13 OS=Synechococcus sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-256 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417326 ID=CF417326; Name=CF417326; organism=Citrus sinensis; type=EST; length=654bp
AAAATGGCAACCCTCTGTACGCCAACTTGTGTAATCTTCTCATCATTACA
ATCATCATCATCTTCTTCTTCTTCATTCAAGACACTCAACACAGGCACTA
CCATCAGTTCTAGCACAACCCCATTCTTCGGGTTCTCTGTTGCTTCAGCG
AAATCGACATCGCCTTTGAACACCAAGCGATCGTTTAAGGTTCGCTGCTG
CCAGAACCTCTCTCTTGTCCCCGACAACCAACGCTGGATGTTCGAGCAGT
CCGAAGTTAATGGACCAGACATTTGGAACAATACATGGTATCCAAAAGCT
GCTGATCACAGGCATTCAGATAAAACATGGTATGTGGTTGATGCAACCGA
TAAGATTCTTGGGAGACTTGCATCCACTATTGCCATTCATATTCGTGGAA
AGAATCTCGCCACCTACACTCCTAGTGTGGACATGGGAGCATATGTGATT
GTGGTGAATGCTGAAAAAGTTGCTGTATCTGGGAAGAAGAGGACACAAAA
GATCTACAGAAGGCATTCAGGGAGACCTGGTGGTATGAAAGAGGAAACAT
TTGACCAGCTACAGCATAGAATCCCAGAAAGAATTATTGAGCATGCTGTT
CGCGGAATGCTTCCGAAAGGGAGGCTTGGTAGAGAACTGTTCACCCATCT
AAAG
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