CF417326

Overview
NameCF417326
Unique NameCF417326
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_KLEP7 (50S ribosomal protein L13 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rplM PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.715e-31
Identity = 66/111 (59.46%), Postives = 84/111 (75.68%), Query Frame = 1
Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NAEKVAV+G KR  K+Y  H+G  GG+KE TF+++  R PER+IE AV+GMLPKG LGR ++  LK
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKREDKMYYHHTGHIGGIKEATFEEMIARRPERVIEIAVKGMLPKGPLGRAMYRKLK 123          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_KLEP3 (50S ribosomal protein L13 OS=Klebsiella pneumoniae (strain 342) GN=rplM PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.715e-31
Identity = 66/111 (59.46%), Postives = 84/111 (75.68%), Query Frame = 1
Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NAEKVAV+G KR  K+Y  H+G  GG+KE TF+++  R PER+IE AV+GMLPKG LGR ++  LK
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKREDKMYYHHTGHIGGIKEATFEEMIARRPERVIEIAVKGMLPKGPLGRAMYRKLK 123          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_AERHH (50S ribosomal protein L13 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=rplM PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.715e-31
Identity = 67/111 (60.36%), Postives = 82/111 (73.87%), Query Frame = 1
Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WY+VDA  K LGR+A+ IA  +RGK+ A YTP VD G Y+IVVNAEKV V+GKK T K+Y  HSG PGG+K  +FD+L  R PE +IE AV+GMLPKG LGR +F  LK
Sbjct:   13 RDWYIVDAEGKTLGRIATEIAARLRGKHKAEYTPHVDTGDYIIVVNAEKVHVTGKKFTDKMYHAHSGFPGGIKSISFDKLIQRKPEMVIEAAVKGMLPKGPLGRAMFRKLK 123          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_PHOLL (50S ribosomal protein L13 OS=Photorhabdus luminescens subsp. laumondii GN=rplM PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.240e-31
Identity = 65/111 (58.56%), Postives = 84/111 (75.68%), Query Frame = 1
Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDA  K LGRLA+ +A  +RGK+ A YTP VD G Y+I+VNAEKVAV+G KR+ KIY  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG LGR ++  LK
Sbjct:   13 RDWYVVDADGKTLGRLATEVARRLRGKHKAEYTPHVDTGDYIIIVNAEKVAVTGNKRSDKIYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMYRKLK 123          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_HAEPS (50S ribosomal protein L13 OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=rplM PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.926e-31
Identity = 67/111 (60.36%), Postives = 83/111 (74.77%), Query Frame = 1
Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NAEKVAV+GKK T KIY  H+G  GG+K+ TF ++  R PE +IE AV+GMLPKG LGR +F  LK
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVINAEKVAVTGKKETDKIYYWHTGYVGGIKDATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFRKLK 123          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SHIDS (50S ribosomal protein L13 OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rplM PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.821e-31
Identity = 65/111 (58.56%), Postives = 84/111 (75.68%), Query Frame = 1
Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG LGR +   LK
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMSRKLK 123          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SHIBS (50S ribosomal protein L13 OS=Shigella boydii serotype 4 (strain Sb227) GN=rplM PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.821e-31
Identity = 65/111 (58.56%), Postives = 84/111 (75.68%), Query Frame = 1
Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G K T K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG LGR +F  LK
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKCTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLK 123          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SHIB3 (50S ribosomal protein L13 OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=rplM PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.821e-31
Identity = 65/111 (58.56%), Postives = 84/111 (75.68%), Query Frame = 1
Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G K T K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG LGR +F  LK
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKCTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLK 123          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_BUCBP (50S ribosomal protein L13 OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rplM PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.821e-31
Identity = 68/124 (54.84%), Postives = 86/124 (69.35%), Query Frame = 1
Query:  289 YPKAADHRHSD--KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            Y K+   + +D  K WY +DAT KILGRLA+ IA  +RGK+   YTP VD+G Y+IV+NA+ + V+GKK T K Y  H+G  GG+K+  F  + HR PERIIE AVRGMLPKG LGR +F  LK
Sbjct:    2 YIKSFSAKSNDFKKMWYCIDATGKILGRLATNIASRLRGKHKVEYTPHVDIGDYLIVINAKNIKVTGKKCTDKFYYHHTGYVGGLKKIAFKDMLHRYPERIIEIAVRGMLPKGPLGRSMFKKLK 125          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_PECCP (50S ribosomal protein L13 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rplM PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.991e-31
Identity = 65/111 (58.56%), Postives = 83/111 (74.77%), Query Frame = 1
Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDA  K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KR  KIY  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG LGR +F  LK
Sbjct:   13 RDWYVVDANGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRNDKIYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLK 123          
The following BLAST results are available for this feature:
BLAST of CF417326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_KLEP71.715e-3159.4650S ribosomal protein L13 OS=Klebsiella pneumoniae... [more]
RL13_KLEP31.715e-3159.4650S ribosomal protein L13 OS=Klebsiella pneumoniae... [more]
RL13_AERHH1.715e-3160.3650S ribosomal protein L13 OS=Aeromonas hydrophila ... [more]
RL13_PHOLL2.240e-3158.5650S ribosomal protein L13 OS=Photorhabdus luminesc... [more]
RL13_HAEPS2.926e-3160.3650S ribosomal protein L13 OS=Haemophilus parasuis ... [more]
RL13_SHIDS3.821e-3158.5650S ribosomal protein L13 OS=Shigella dysenteriae ... [more]
RL13_SHIBS3.821e-3158.5650S ribosomal protein L13 OS=Shigella boydii serot... [more]
RL13_SHIB33.821e-3158.5650S ribosomal protein L13 OS=Shigella boydii serot... [more]
RL13_BUCBP3.821e-3154.8450S ribosomal protein L13 OS=Buchnera aphidicola s... [more]
RL13_PECCP4.991e-3158.5650S ribosomal protein L13 OS=Pectobacterium caroto... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-256 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417326 ID=CF417326; Name=CF417326; organism=Citrus sinensis; type=EST; length=654bp
AAAATGGCAACCCTCTGTACGCCAACTTGTGTAATCTTCTCATCATTACA
ATCATCATCATCTTCTTCTTCTTCATTCAAGACACTCAACACAGGCACTA
CCATCAGTTCTAGCACAACCCCATTCTTCGGGTTCTCTGTTGCTTCAGCG
AAATCGACATCGCCTTTGAACACCAAGCGATCGTTTAAGGTTCGCTGCTG
CCAGAACCTCTCTCTTGTCCCCGACAACCAACGCTGGATGTTCGAGCAGT
CCGAAGTTAATGGACCAGACATTTGGAACAATACATGGTATCCAAAAGCT
GCTGATCACAGGCATTCAGATAAAACATGGTATGTGGTTGATGCAACCGA
TAAGATTCTTGGGAGACTTGCATCCACTATTGCCATTCATATTCGTGGAA
AGAATCTCGCCACCTACACTCCTAGTGTGGACATGGGAGCATATGTGATT
GTGGTGAATGCTGAAAAAGTTGCTGTATCTGGGAAGAAGAGGACACAAAA
GATCTACAGAAGGCATTCAGGGAGACCTGGTGGTATGAAAGAGGAAACAT
TTGACCAGCTACAGCATAGAATCCCAGAAAGAATTATTGAGCATGCTGTT
CGCGGAATGCTTCCGAAAGGGAGGCTTGGTAGAGAACTGTTCACCCATCT
AAAG
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