CF417326
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_KLEP7 (50S ribosomal protein L13 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rplM PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.715e-31 Identity = 66/111 (59.46%), Postives = 84/111 (75.68%), Query Frame = 1 Query: 322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 + WYVVDAT K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NAEKVAV+G KR K+Y H+G GG+KE TF+++ R PER+IE AV+GMLPKG LGR ++ LK Sbjct: 13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKREDKMYYHHTGHIGGIKEATFEEMIARRPERVIEIAVKGMLPKGPLGRAMYRKLK 123
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_KLEP3 (50S ribosomal protein L13 OS=Klebsiella pneumoniae (strain 342) GN=rplM PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.715e-31 Identity = 66/111 (59.46%), Postives = 84/111 (75.68%), Query Frame = 1 Query: 322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 + WYVVDAT K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NAEKVAV+G KR K+Y H+G GG+KE TF+++ R PER+IE AV+GMLPKG LGR ++ LK Sbjct: 13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKREDKMYYHHTGHIGGIKEATFEEMIARRPERVIEIAVKGMLPKGPLGRAMYRKLK 123
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_AERHH (50S ribosomal protein L13 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=rplM PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.715e-31 Identity = 67/111 (60.36%), Postives = 82/111 (73.87%), Query Frame = 1 Query: 322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 + WY+VDA K LGR+A+ IA +RGK+ A YTP VD G Y+IVVNAEKV V+GKK T K+Y HSG PGG+K +FD+L R PE +IE AV+GMLPKG LGR +F LK Sbjct: 13 RDWYIVDAEGKTLGRIATEIAARLRGKHKAEYTPHVDTGDYIIVVNAEKVHVTGKKFTDKMYHAHSGFPGGIKSISFDKLIQRKPEMVIEAAVKGMLPKGPLGRAMFRKLK 123
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_PHOLL (50S ribosomal protein L13 OS=Photorhabdus luminescens subsp. laumondii GN=rplM PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.240e-31 Identity = 65/111 (58.56%), Postives = 84/111 (75.68%), Query Frame = 1 Query: 322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 + WYVVDA K LGRLA+ +A +RGK+ A YTP VD G Y+I+VNAEKVAV+G KR+ KIY H+G GG+K+ TF+++ R PER+IE AV+GMLPKG LGR ++ LK Sbjct: 13 RDWYVVDADGKTLGRLATEVARRLRGKHKAEYTPHVDTGDYIIIVNAEKVAVTGNKRSDKIYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMYRKLK 123
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_HAEPS (50S ribosomal protein L13 OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=rplM PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 2.926e-31 Identity = 67/111 (60.36%), Postives = 83/111 (74.77%), Query Frame = 1 Query: 322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 + WYVVDAT K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NAEKVAV+GKK T KIY H+G GG+K+ TF ++ R PE +IE AV+GMLPKG LGR +F LK Sbjct: 13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVINAEKVAVTGKKETDKIYYWHTGYVGGIKDATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFRKLK 123
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SHIDS (50S ribosomal protein L13 OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rplM PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 3.821e-31 Identity = 65/111 (58.56%), Postives = 84/111 (75.68%), Query Frame = 1 Query: 322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 + WYVVDAT K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y H+G GG+K+ TF+++ R PER+IE AV+GMLPKG LGR + LK Sbjct: 13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMSRKLK 123
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SHIBS (50S ribosomal protein L13 OS=Shigella boydii serotype 4 (strain Sb227) GN=rplM PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 3.821e-31 Identity = 65/111 (58.56%), Postives = 84/111 (75.68%), Query Frame = 1 Query: 322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 + WYVVDAT K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NA+KVAV+G K T K+Y H+G GG+K+ TF+++ R PER+IE AV+GMLPKG LGR +F LK Sbjct: 13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKCTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLK 123
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SHIB3 (50S ribosomal protein L13 OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=rplM PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 3.821e-31 Identity = 65/111 (58.56%), Postives = 84/111 (75.68%), Query Frame = 1 Query: 322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 + WYVVDAT K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NA+KVAV+G K T K+Y H+G GG+K+ TF+++ R PER+IE AV+GMLPKG LGR +F LK Sbjct: 13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKCTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLK 123
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_BUCBP (50S ribosomal protein L13 OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rplM PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 3.821e-31 Identity = 68/124 (54.84%), Postives = 86/124 (69.35%), Query Frame = 1 Query: 289 YPKAADHRHSD--KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 Y K+ + +D K WY +DAT KILGRLA+ IA +RGK+ YTP VD+G Y+IV+NA+ + V+GKK T K Y H+G GG+K+ F + HR PERIIE AVRGMLPKG LGR +F LK Sbjct: 2 YIKSFSAKSNDFKKMWYCIDATGKILGRLATNIASRLRGKHKVEYTPHVDIGDYLIVINAKNIKVTGKKCTDKFYYHHTGYVGGLKKIAFKDMLHRYPERIIEIAVRGMLPKGPLGRSMFKKLK 125
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_PECCP (50S ribosomal protein L13 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rplM PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 4.991e-31 Identity = 65/111 (58.56%), Postives = 83/111 (74.77%), Query Frame = 1 Query: 322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 + WYVVDA K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NA+KVAV+G KR KIY H+G GG+K+ TF+++ R PER+IE AV+GMLPKG LGR +F LK Sbjct: 13 RDWYVVDANGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRNDKIYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLK 123 The following BLAST results are available for this feature:
BLAST of CF417326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417326 ID=CF417326; Name=CF417326; organism=Citrus sinensis; type=EST; length=654bpback to top |