CF417326

Overview
NameCF417326
Unique NameCF417326
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_BUCAI (50S ribosomal protein L13 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rplM PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.896e-30
Identity = 61/109 (55.96%), Postives = 80/109 (73.39%), Query Frame = 1
Query:  328 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            WY VDAT+KILGRLAS ++ H+RGK+   YTP +D G Y+IV+NA K+ V+G KR  KIY  H+G  GG+K+  F+++    PER+IE AV+GMLPKG LGR +F  LK
Sbjct:   15 WYYVDATNKILGRLASALSFHLRGKHKTEYTPHLDTGDYIIVINASKILVTGNKRINKIYYHHTGYVGGIKQSRFEEMISSHPERVIEIAVKGMLPKGALGRSMFKKLK 123          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_BUCA5 (50S ribosomal protein L13 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=rplM PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.896e-30
Identity = 61/109 (55.96%), Postives = 80/109 (73.39%), Query Frame = 1
Query:  328 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            WY VDAT+KILGRLAS ++ H+RGK+   YTP +D G Y+IV+NA K+ V+G KR  KIY  H+G  GG+K+  F+++    PER+IE AV+GMLPKG LGR +F  LK
Sbjct:   15 WYYVDATNKILGRLASALSFHLRGKHKTEYTPHLDTGDYIIVINASKILVTGNKRINKIYYHHTGYVGGIKQSRFEEMISSHPERVIEIAVKGMLPKGALGRSMFKKLK 123          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_ACTSZ (50S ribosomal protein L13 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rplM PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.896e-30
Identity = 64/111 (57.66%), Postives = 83/111 (74.77%), Query Frame = 1
Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G+K T K+Y  H+G  GG+K+ TF ++  R PE +IE AV+GMLPKG LGR +F  LK
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVINADKVAVTGRKETDKVYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFRKLK 123          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_VIBPA (50S ribosomal protein L13 OS=Vibrio parahaemolyticus GN=rplM PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.477e-30
Identity = 65/111 (58.56%), Postives = 81/111 (72.97%), Query Frame = 1
Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDA  K LGRLAS IA  +RGK+ A YTP VD G Y+IV+NAEKVAV+G K   K+Y RHS  PGG+K  TF++L  R PE ++E AV+GMLP+G LGR ++  LK
Sbjct:   13 RDWYVVDAEGKTLGRLASEIASRLRGKHKAEYTPHVDAGDYIIVINAEKVAVTGNKAKDKVYYRHSEFPGGLKSITFEKLIDRKPEMVLELAVKGMLPRGPLGRAMYRKLK 123          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_HAES2 (50S ribosomal protein L13 OS=Haemophilus somnus (strain 2336) GN=rplM PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.477e-30
Identity = 64/111 (57.66%), Postives = 82/111 (73.87%), Query Frame = 1
Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y++V+NAEKVAV+G K T K+Y  H+G  GG+K+ TF ++  R PE +IE AV+GMLPKG LGR +F  LK
Sbjct:   13 RDWYVVDATGKTLGRLAAELARRLRGKHKAEYTPHVDTGDYIVVINAEKVAVTGNKETDKLYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFRKLK 123          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_HAES1 (50S ribosomal protein L13 OS=Haemophilus somnus (strain 129Pt) GN=rplM PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.477e-30
Identity = 64/111 (57.66%), Postives = 82/111 (73.87%), Query Frame = 1
Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y++V+NAEKVAV+G K T K+Y  H+G  GG+K+ TF ++  R PE +IE AV+GMLPKG LGR +F  LK
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIVVINAEKVAVTGNKETDKLYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFRKLK 123          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_HAEIN (50S ribosomal protein L13 OS=Haemophilus influenzae GN=rplM PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.477e-30
Identity = 64/111 (57.66%), Postives = 83/111 (74.77%), Query Frame = 1
Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G+K T K+Y  H+G  GG+K+ TF ++  R PE +IE AV+GMLPKG LGR +F  LK
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVINADKVAVTGRKETDKLYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFRKLK 123          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_HAEIG (50S ribosomal protein L13 OS=Haemophilus influenzae (strain PittGG) GN=rplM PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.477e-30
Identity = 64/111 (57.66%), Postives = 83/111 (74.77%), Query Frame = 1
Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G+K T K+Y  H+G  GG+K+ TF ++  R PE +IE AV+GMLPKG LGR +F  LK
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVINADKVAVTGRKETDKLYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFRKLK 123          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_HAEIE (50S ribosomal protein L13 OS=Haemophilus influenzae (strain PittEE) GN=rplM PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.477e-30
Identity = 64/111 (57.66%), Postives = 83/111 (74.77%), Query Frame = 1
Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G+K T K+Y  H+G  GG+K+ TF ++  R PE +IE AV+GMLPKG LGR +F  LK
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVINADKVAVTGRKETDKLYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFRKLK 123          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_HAEI8 (50S ribosomal protein L13 OS=Haemophilus influenzae (strain 86-028NP) GN=rplM PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.477e-30
Identity = 64/111 (57.66%), Postives = 83/111 (74.77%), Query Frame = 1
Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G+K T K+Y  H+G  GG+K+ TF ++  R PE +IE AV+GMLPKG LGR +F  LK
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVINADKVAVTGRKETDKLYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFRKLK 123          
The following BLAST results are available for this feature:
BLAST of CF417326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_BUCAI1.896e-3055.9650S ribosomal protein L13 OS=Buchnera aphidicola s... [more]
RL13_BUCA51.896e-3055.9650S ribosomal protein L13 OS=Buchnera aphidicola s... [more]
RL13_ACTSZ1.896e-3057.6650S ribosomal protein L13 OS=Actinobacillus succin... [more]
RL13_VIBPA2.477e-3058.5650S ribosomal protein L13 OS=Vibrio parahaemolytic... [more]
RL13_HAES22.477e-3057.6650S ribosomal protein L13 OS=Haemophilus somnus (s... [more]
RL13_HAES12.477e-3057.6650S ribosomal protein L13 OS=Haemophilus somnus (s... [more]
RL13_HAEIN2.477e-3057.6650S ribosomal protein L13 OS=Haemophilus influenza... [more]
RL13_HAEIG2.477e-3057.6650S ribosomal protein L13 OS=Haemophilus influenza... [more]
RL13_HAEIE2.477e-3057.6650S ribosomal protein L13 OS=Haemophilus influenza... [more]
RL13_HAEI82.477e-3057.6650S ribosomal protein L13 OS=Haemophilus influenza... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-256 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417326 ID=CF417326; Name=CF417326; organism=Citrus sinensis; type=EST; length=654bp
AAAATGGCAACCCTCTGTACGCCAACTTGTGTAATCTTCTCATCATTACA
ATCATCATCATCTTCTTCTTCTTCATTCAAGACACTCAACACAGGCACTA
CCATCAGTTCTAGCACAACCCCATTCTTCGGGTTCTCTGTTGCTTCAGCG
AAATCGACATCGCCTTTGAACACCAAGCGATCGTTTAAGGTTCGCTGCTG
CCAGAACCTCTCTCTTGTCCCCGACAACCAACGCTGGATGTTCGAGCAGT
CCGAAGTTAATGGACCAGACATTTGGAACAATACATGGTATCCAAAAGCT
GCTGATCACAGGCATTCAGATAAAACATGGTATGTGGTTGATGCAACCGA
TAAGATTCTTGGGAGACTTGCATCCACTATTGCCATTCATATTCGTGGAA
AGAATCTCGCCACCTACACTCCTAGTGTGGACATGGGAGCATATGTGATT
GTGGTGAATGCTGAAAAAGTTGCTGTATCTGGGAAGAAGAGGACACAAAA
GATCTACAGAAGGCATTCAGGGAGACCTGGTGGTATGAAAGAGGAAACAT
TTGACCAGCTACAGCATAGAATCCCAGAAAGAATTATTGAGCATGCTGTT
CGCGGAATGCTTCCGAAAGGGAGGCTTGGTAGAGAACTGTTCACCCATCT
AAAG
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