CF417326
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SHEAM (50S ribosomal protein L13 OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=rplM PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 5.518e-30 Identity = 65/111 (58.56%), Postives = 79/111 (71.17%), Query Frame = 1 Query: 322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 + WYVVDA K LGR+A+ IA +RGK+ YTP VD G Y+IV+NAEKV V+G K K+Y HSG PGG+KE F++LQ PE IIE AV+GMLPKG LGR +F LK Sbjct: 13 RDWYVVDAEGKTLGRIATEIASRLRGKHKPEYTPHVDTGDYIIVINAEKVTVTGNKAAGKMYYSHSGFPGGIKEINFEKLQAHKPEMIIEKAVKGMLPKGPLGRAMFRKLK 123
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_NATTJ (50S ribosomal protein L13 OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=rplM PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 5.518e-30 Identity = 65/112 (58.04%), Postives = 84/112 (75.00%), Query Frame = 1 Query: 319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 ++ WY +DAT+K LGRLAS IA +RGK+ T+TP VD G YVIV+NAEKV ++GKKRTQK + RHSG PGG+K ++ L + PE+ IE AV+GMLPK RLGR++ LK Sbjct: 13 ERKWYTIDATNKPLGRLASEIAEILRGKHKPTFTPHVDTGDYVIVLNAEKVLLTGKKRTQKHHYRHSGYPGGLKAINYETLLNTKPEKAIELAVKGMLPKNRLGRKMIKKLK 124
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_VIBHB (50S ribosomal protein L13 OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=rplM PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 7.206e-30 Identity = 65/111 (58.56%), Postives = 80/111 (72.07%), Query Frame = 1 Query: 322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 + WYVVDA K LGRLAS IA +RGK+ A YTP VD G Y+IV+NAEKVAV+G K K+Y RHS PGG+K TF++L R PE +E AV+GMLP+G LGR ++ LK Sbjct: 13 RDWYVVDAEGKTLGRLASEIASRLRGKHKAEYTPHVDTGDYIIVINAEKVAVTGNKAKNKVYYRHSEFPGGLKSITFEKLIDRKPEMALELAVKGMLPRGPLGRAMYRKLK 123
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_VIBFM (50S ribosomal protein L13 OS=Vibrio fischeri (strain MJ11) GN=rplM PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 7.206e-30 Identity = 64/111 (57.66%), Postives = 82/111 (73.87%), Query Frame = 1 Query: 322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 + WYVVDA K LGR+A+ IA +RGK+ A YTP VD G Y+IV+NAEKV V+GKK + KIY RHS PGG+K +F++L R PE +IE AV+GMLP+G LGR ++ LK Sbjct: 13 RDWYVVDAEGKTLGRIATEIASRLRGKHKAEYTPHVDTGDYIIVINAEKVRVTGKKASDKIYYRHSEFPGGLKSISFEKLIDRKPEMVIELAVKGMLPRGPLGRAMYRKLK 123
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_VIBF1 (50S ribosomal protein L13 OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=rplM PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 7.206e-30 Identity = 64/111 (57.66%), Postives = 82/111 (73.87%), Query Frame = 1 Query: 322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 + WYVVDA K LGR+A+ IA +RGK+ A YTP VD G Y+IV+NAEKV V+GKK + KIY RHS PGG+K +F++L R PE +IE AV+GMLP+G LGR ++ LK Sbjct: 13 RDWYVVDAEGKTLGRIATEIASRLRGKHKAEYTPHVDTGDYIIVINAEKVRVTGKKASDKIYYRHSEFPGGLKSISFEKLIDRKPEMVIELAVKGMLPRGPLGRAMYRKLK 123
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SHEB8 (50S ribosomal protein L13 OS=Shewanella baltica (strain OS185) GN=rplM PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 7.206e-30 Identity = 65/111 (58.56%), Postives = 81/111 (72.97%), Query Frame = 1 Query: 322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 + W+VVDA K LGR+A+ IAI +RGK+ YTP VD G Y+IVVNAEKV V+G K K Y HSG PGG+K+ +F++LQ + PE IIE AV+GMLPKG LGR +F LK Sbjct: 13 RDWFVVDADGKTLGRIATEIAIRLRGKHKPEYTPHVDTGDYIIVVNAEKVTVTGNKAKGKTYYSHSGFPGGIKQISFEKLQAQKPEMIIEKAVKGMLPKGPLGRAMFRKLK 123
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SACEN (50S ribosomal protein L13 OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=rplM PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 7.206e-30 Identity = 62/124 (50.00%), Postives = 90/124 (72.58%), Query Frame = 1 Query: 283 TWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 T+ PKA + H+ W+V+DA D +LGRLA+ A+ +RGK+ TY P VD G +V+VVNAEKVA++G KR Q + RHSG PGG+++++F Q+ + PER++E A++GMLPK +LGR + LK Sbjct: 3 TYSPKAGEVTHA---WHVIDAEDVVLGRLATQAALLLRGKHKPTYAPHVDTGDFVVVVNAEKVALTGNKRDQAFHYRHSGYPGGLRKQSFGQVLDKHPERLLEKAIKGMLPKNKLGRAMGKKLK 123
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_PASMU (50S ribosomal protein L13 OS=Pasteurella multocida GN=rplM PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 7.206e-30 Identity = 63/111 (56.76%), Postives = 82/111 (73.87%), Query Frame = 1 Query: 322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 + WYVVDAT K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NAEKVAV+G K + K+Y H+G GG+K+ TF ++ R PE +IE AV+GMLPKG LGR ++ LK Sbjct: 13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVINAEKVAVTGNKESDKLYHWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMYRKLK 123
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_GEOSW (50S ribosomal protein L13 OS=Geobacillus sp. (strain WCH70) GN=rplM PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 7.206e-30 Identity = 60/111 (54.05%), Postives = 84/111 (75.68%), Query Frame = 1 Query: 319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHL 651 ++ WYVVDA K LGRLAS +A +RGK+ T+TP VD G +VI++NAEK+ ++GKK T+K+Y RHS PGG+K T +++ PE+++E A+RGMLPKGRLGR++F L Sbjct: 13 ERKWYVVDAAGKTLGRLASEVAAILRGKHKPTFTPHVDCGDHVIIINAEKIELTGKKLTKKLYYRHSLHPGGLKVRTALEMRTNYPEQMLERAIRGMLPKGRLGRQMFKKL 123
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_AZOSB (50S ribosomal protein L13 OS=Azoarcus sp. (strain BH72) GN=rplM PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 7.206e-30 Identity = 61/111 (54.95%), Postives = 79/111 (71.17%), Query Frame = 1 Query: 322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 + W+VVD TDK+LGRLA+ +A +RGK+ A YTP VD G Y++VVN +K+ V+G K K Y RHSG PGG+ E F +LQ R PER++E AV+GMLPKG LG + LK Sbjct: 13 RDWFVVDGTDKVLGRLAAEVARRLRGKHKAIYTPHVDTGDYIVVVNVDKLRVTGNKALDKKYYRHSGYPGGIYETNFTKLQQRFPERVLEKAVKGMLPKGPLGYAMLKKLK 123 The following BLAST results are available for this feature:
BLAST of CF417326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417326 ID=CF417326; Name=CF417326; organism=Citrus sinensis; type=EST; length=654bpback to top |