CF417326

Overview
NameCF417326
Unique NameCF417326
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SHEAM (50S ribosomal protein L13 OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=rplM PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.518e-30
Identity = 65/111 (58.56%), Postives = 79/111 (71.17%), Query Frame = 1
Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDA  K LGR+A+ IA  +RGK+   YTP VD G Y+IV+NAEKV V+G K   K+Y  HSG PGG+KE  F++LQ   PE IIE AV+GMLPKG LGR +F  LK
Sbjct:   13 RDWYVVDAEGKTLGRIATEIASRLRGKHKPEYTPHVDTGDYIIVINAEKVTVTGNKAAGKMYYSHSGFPGGIKEINFEKLQAHKPEMIIEKAVKGMLPKGPLGRAMFRKLK 123          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_NATTJ (50S ribosomal protein L13 OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=rplM PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.518e-30
Identity = 65/112 (58.04%), Postives = 84/112 (75.00%), Query Frame = 1
Query:  319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            ++ WY +DAT+K LGRLAS IA  +RGK+  T+TP VD G YVIV+NAEKV ++GKKRTQK + RHSG PGG+K   ++ L +  PE+ IE AV+GMLPK RLGR++   LK
Sbjct:   13 ERKWYTIDATNKPLGRLASEIAEILRGKHKPTFTPHVDTGDYVIVLNAEKVLLTGKKRTQKHHYRHSGYPGGLKAINYETLLNTKPEKAIELAVKGMLPKNRLGRKMIKKLK 124          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_VIBHB (50S ribosomal protein L13 OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=rplM PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.206e-30
Identity = 65/111 (58.56%), Postives = 80/111 (72.07%), Query Frame = 1
Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDA  K LGRLAS IA  +RGK+ A YTP VD G Y+IV+NAEKVAV+G K   K+Y RHS  PGG+K  TF++L  R PE  +E AV+GMLP+G LGR ++  LK
Sbjct:   13 RDWYVVDAEGKTLGRLASEIASRLRGKHKAEYTPHVDTGDYIIVINAEKVAVTGNKAKNKVYYRHSEFPGGLKSITFEKLIDRKPEMALELAVKGMLPRGPLGRAMYRKLK 123          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_VIBFM (50S ribosomal protein L13 OS=Vibrio fischeri (strain MJ11) GN=rplM PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.206e-30
Identity = 64/111 (57.66%), Postives = 82/111 (73.87%), Query Frame = 1
Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDA  K LGR+A+ IA  +RGK+ A YTP VD G Y+IV+NAEKV V+GKK + KIY RHS  PGG+K  +F++L  R PE +IE AV+GMLP+G LGR ++  LK
Sbjct:   13 RDWYVVDAEGKTLGRIATEIASRLRGKHKAEYTPHVDTGDYIIVINAEKVRVTGKKASDKIYYRHSEFPGGLKSISFEKLIDRKPEMVIELAVKGMLPRGPLGRAMYRKLK 123          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_VIBF1 (50S ribosomal protein L13 OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=rplM PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.206e-30
Identity = 64/111 (57.66%), Postives = 82/111 (73.87%), Query Frame = 1
Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDA  K LGR+A+ IA  +RGK+ A YTP VD G Y+IV+NAEKV V+GKK + KIY RHS  PGG+K  +F++L  R PE +IE AV+GMLP+G LGR ++  LK
Sbjct:   13 RDWYVVDAEGKTLGRIATEIASRLRGKHKAEYTPHVDTGDYIIVINAEKVRVTGKKASDKIYYRHSEFPGGLKSISFEKLIDRKPEMVIELAVKGMLPRGPLGRAMYRKLK 123          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SHEB8 (50S ribosomal protein L13 OS=Shewanella baltica (strain OS185) GN=rplM PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.206e-30
Identity = 65/111 (58.56%), Postives = 81/111 (72.97%), Query Frame = 1
Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + W+VVDA  K LGR+A+ IAI +RGK+   YTP VD G Y+IVVNAEKV V+G K   K Y  HSG PGG+K+ +F++LQ + PE IIE AV+GMLPKG LGR +F  LK
Sbjct:   13 RDWFVVDADGKTLGRIATEIAIRLRGKHKPEYTPHVDTGDYIIVVNAEKVTVTGNKAKGKTYYSHSGFPGGIKQISFEKLQAQKPEMIIEKAVKGMLPKGPLGRAMFRKLK 123          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SACEN (50S ribosomal protein L13 OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=rplM PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.206e-30
Identity = 62/124 (50.00%), Postives = 90/124 (72.58%), Query Frame = 1
Query:  283 TWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            T+ PKA +  H+   W+V+DA D +LGRLA+  A+ +RGK+  TY P VD G +V+VVNAEKVA++G KR Q  + RHSG PGG+++++F Q+  + PER++E A++GMLPK +LGR +   LK
Sbjct:    3 TYSPKAGEVTHA---WHVIDAEDVVLGRLATQAALLLRGKHKPTYAPHVDTGDFVVVVNAEKVALTGNKRDQAFHYRHSGYPGGLRKQSFGQVLDKHPERLLEKAIKGMLPKNKLGRAMGKKLK 123          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_PASMU (50S ribosomal protein L13 OS=Pasteurella multocida GN=rplM PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.206e-30
Identity = 63/111 (56.76%), Postives = 82/111 (73.87%), Query Frame = 1
Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NAEKVAV+G K + K+Y  H+G  GG+K+ TF ++  R PE +IE AV+GMLPKG LGR ++  LK
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVINAEKVAVTGNKESDKLYHWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMYRKLK 123          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_GEOSW (50S ribosomal protein L13 OS=Geobacillus sp. (strain WCH70) GN=rplM PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.206e-30
Identity = 60/111 (54.05%), Postives = 84/111 (75.68%), Query Frame = 1
Query:  319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHL 651
            ++ WYVVDA  K LGRLAS +A  +RGK+  T+TP VD G +VI++NAEK+ ++GKK T+K+Y RHS  PGG+K  T  +++   PE+++E A+RGMLPKGRLGR++F  L
Sbjct:   13 ERKWYVVDAAGKTLGRLASEVAAILRGKHKPTFTPHVDCGDHVIIINAEKIELTGKKLTKKLYYRHSLHPGGLKVRTALEMRTNYPEQMLERAIRGMLPKGRLGRQMFKKL 123          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_AZOSB (50S ribosomal protein L13 OS=Azoarcus sp. (strain BH72) GN=rplM PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.206e-30
Identity = 61/111 (54.95%), Postives = 79/111 (71.17%), Query Frame = 1
Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + W+VVD TDK+LGRLA+ +A  +RGK+ A YTP VD G Y++VVN +K+ V+G K   K Y RHSG PGG+ E  F +LQ R PER++E AV+GMLPKG LG  +   LK
Sbjct:   13 RDWFVVDGTDKVLGRLAAEVARRLRGKHKAIYTPHVDTGDYIVVVNVDKLRVTGNKALDKKYYRHSGYPGGIYETNFTKLQQRFPERVLEKAVKGMLPKGPLGYAMLKKLK 123          
The following BLAST results are available for this feature:
BLAST of CF417326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_SHEAM5.518e-3058.5650S ribosomal protein L13 OS=Shewanella amazonensi... [more]
RL13_NATTJ5.518e-3058.0450S ribosomal protein L13 OS=Natranaerobius thermo... [more]
RL13_VIBHB7.206e-3058.5650S ribosomal protein L13 OS=Vibrio harveyi (strai... [more]
RL13_VIBFM7.206e-3057.6650S ribosomal protein L13 OS=Vibrio fischeri (stra... [more]
RL13_VIBF17.206e-3057.6650S ribosomal protein L13 OS=Vibrio fischeri (stra... [more]
RL13_SHEB87.206e-3058.5650S ribosomal protein L13 OS=Shewanella baltica (s... [more]
RL13_SACEN7.206e-3050.0050S ribosomal protein L13 OS=Saccharopolyspora ery... [more]
RL13_PASMU7.206e-3056.7650S ribosomal protein L13 OS=Pasteurella multocida... [more]
RL13_GEOSW7.206e-3054.0550S ribosomal protein L13 OS=Geobacillus sp. (stra... [more]
RL13_AZOSB7.206e-3054.9550S ribosomal protein L13 OS=Azoarcus sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-256 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417326 ID=CF417326; Name=CF417326; organism=Citrus sinensis; type=EST; length=654bp
AAAATGGCAACCCTCTGTACGCCAACTTGTGTAATCTTCTCATCATTACA
ATCATCATCATCTTCTTCTTCTTCATTCAAGACACTCAACACAGGCACTA
CCATCAGTTCTAGCACAACCCCATTCTTCGGGTTCTCTGTTGCTTCAGCG
AAATCGACATCGCCTTTGAACACCAAGCGATCGTTTAAGGTTCGCTGCTG
CCAGAACCTCTCTCTTGTCCCCGACAACCAACGCTGGATGTTCGAGCAGT
CCGAAGTTAATGGACCAGACATTTGGAACAATACATGGTATCCAAAAGCT
GCTGATCACAGGCATTCAGATAAAACATGGTATGTGGTTGATGCAACCGA
TAAGATTCTTGGGAGACTTGCATCCACTATTGCCATTCATATTCGTGGAA
AGAATCTCGCCACCTACACTCCTAGTGTGGACATGGGAGCATATGTGATT
GTGGTGAATGCTGAAAAAGTTGCTGTATCTGGGAAGAAGAGGACACAAAA
GATCTACAGAAGGCATTCAGGGAGACCTGGTGGTATGAAAGAGGAAACAT
TTGACCAGCTACAGCATAGAATCCCAGAAAGAATTATTGAGCATGCTGTT
CGCGGAATGCTTCCGAAAGGGAGGCTTGGTAGAGAACTGTTCACCCATCT
AAAG
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