CF417326

Overview
NameCF417326
Unique NameCF417326
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417326_ssr51 microsatellite CF417326_ssr51:51..62. BLAST: Citrus ESTs to Prunus persica proteins V1
CF417326_ssr63 microsatellite CF417326_ssr63:63..74. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig882 contig Csv1_Contig882:36..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_PROM5 (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplM PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.789e-36
Identity = 73/112 (65.18%), Postives = 88/112 (78.57%), Query Frame = 1
Query:  319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            ++ W++VDA DK LGRLA+ IA  +RGKN  T+TP +D G +VIVVNAEKV V+GKK +QK+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP   LGR+ F  LK
Sbjct:   13 ERNWFLVDAKDKTLGRLATEIASVLRGKNKPTFTPHLDTGDFVIVVNAEKVEVTGKKTSQKLYRRHSGRPGGMKVEKFESLQERIPERIIEQAVKGMLPHNSLGRQQFKKLK 124          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_PROM0 (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplM PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.789e-36
Identity = 73/112 (65.18%), Postives = 88/112 (78.57%), Query Frame = 1
Query:  319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            ++ W++VDA DK LGRLA+ IA  +RGKN  T+TP +D G +VIVVNAEKV V+GKK +QK+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP   LGR+ F  LK
Sbjct:   13 ERNWFLVDAKDKTLGRLATEIATVLRGKNKPTFTPHLDTGDFVIVVNAEKVEVTGKKASQKLYRRHSGRPGGMKIEKFESLQERIPERIIEQAVKGMLPHNSLGRQQFKKLK 124          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SYNJA (50S ribosomal protein L13 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplM PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.148e-35
Identity = 73/109 (66.97%), Postives = 87/109 (79.82%), Query Frame = 1
Query:  328 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            WY+VDA ++ LGRLA  +A  +RGK+   +TP +D G YVIV+NAEKV V+GKKRTQK+YRRHSGRPGGMK ETF QLQ R+PER+IE AV+GMLP  RLGR  FT LK
Sbjct:   16 WYLVDAANQRLGRLAVVVAKLLRGKHKPNFTPHLDTGDYVIVINAEKVVVTGKKRTQKLYRRHSGRPGGMKVETFAQLQARLPERVIEKAVKGMLPHTRLGRRQFTKLK 124          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_TRIEI (50S ribosomal protein L13 OS=Trichodesmium erythraeum (strain IMS101) GN=rplM PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.499e-35
Identity = 74/111 (66.67%), Postives = 87/111 (78.38%), Query Frame = 1
Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            K WYV+DA  + LGRLA+ IA+ IRGKN  TYTP +D G +VIVVNAEKV V+GKK +QK+YRRHSGRPGGMK E F +LQ R+P+RIIE AV GMLPK  LGR+L   LK
Sbjct:   14 KKWYVIDAEGQRLGRLATAIAMIIRGKNKPTYTPHMDTGDFVIVVNAEKVTVTGKKSSQKLYRRHSGRPGGMKTEVFSKLQARLPQRIIEEAVFGMLPKNSLGRKLHNKLK 124          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SYNPX (50S ribosomal protein L13 OS=Synechococcus sp. (strain WH8102) GN=rplM PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.499e-35
Identity = 69/112 (61.61%), Postives = 89/112 (79.46%), Query Frame = 1
Query:  319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            ++ WY+VDA +K LGRLA+ +A  +RGKN  ++TP +D G +V+VVNAEK+ VSG K TQK+YRRHSGRPGGMK ETF+ LQ RIPERI+E A++GMLP   LGR++F  LK
Sbjct:   13 ERQWYLVDAENKTLGRLATEVAAVLRGKNNPSFTPHLDTGDFVVVVNAEKIRVSGSKPTQKLYRRHSGRPGGMKTETFEALQDRIPERIVEKAIKGMLPHNALGRQMFRKLK 124          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_PROMP (50S ribosomal protein L13 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplM PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.499e-35
Identity = 72/112 (64.29%), Postives = 88/112 (78.57%), Query Frame = 1
Query:  319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            ++ W++VDA DK LGRL++ IA  +RGKN  T+TP +D G +VIVVNAEKV V+GKK +QK+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP   LGR+ F  LK
Sbjct:   13 ERNWFLVDAKDKTLGRLSTEIAAVLRGKNKPTFTPHLDTGDFVIVVNAEKVEVTGKKASQKLYRRHSGRPGGMKVEKFESLQERIPERIIEQAVKGMLPHNSLGRQQFKKLK 124          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SYNS9 (50S ribosomal protein L13 OS=Synechococcus sp. (strain CC9902) GN=rplM PE=3 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.557e-35
Identity = 69/112 (61.61%), Postives = 88/112 (78.57%), Query Frame = 1
Query:  319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            D+ WYVVDA ++ LGRLA+ +A  +RGKN   +TP +D G +V+VVNAEK+ VSGKK  QK+YRRHSGRPGGMK ETF+ LQ RIPERI+E A++GMLP   LGR+++  LK
Sbjct:   13 DRQWYVVDAENQTLGRLATEVASILRGKNNPNFTPHLDTGDFVVVVNAEKIQVSGKKPQQKLYRRHSGRPGGMKVETFESLQERIPERIVEKAIKGMLPHNALGRQMYRKLK 124          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_PROMT (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain NATL2A) GN=rplM PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.697e-35
Identity = 70/112 (62.50%), Postives = 88/112 (78.57%), Query Frame = 1
Query:  319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            D+ W++VDA ++ LGRLA+ +A  +RGK    +TP +D G +VIVVNAEK+ V+GKK  QK+YRRHSGRPGGMK ETF  LQ RIPERI+E A++GMLP  RLGR+LFT LK
Sbjct:   13 DRQWFLVDAENQTLGRLATEVASVLRGKTKPNFTPHLDTGDFVIVVNAEKIKVTGKKSDQKLYRRHSGRPGGMKVETFKALQSRIPERIVEKAIKGMLPHTRLGRQLFTKLK 124          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_PROM1 (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain NATL1A) GN=rplM PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.697e-35
Identity = 70/112 (62.50%), Postives = 88/112 (78.57%), Query Frame = 1
Query:  319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            D+ W++VDA ++ LGRLA+ +A  +RGK    +TP +D G +VIVVNAEK+ V+GKK  QK+YRRHSGRPGGMK ETF  LQ RIPERI+E A++GMLP  RLGR+LFT LK
Sbjct:   13 DRQWFLVDAENQTLGRLATEVASVLRGKTKPNFTPHLDTGDFVIVVNAEKIKVTGKKSDQKLYRRHSGRPGGMKVETFKALQSRIPERIVEKAIKGMLPHTRLGRQLFTKLK 124          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SYNSC (50S ribosomal protein L13 OS=Synechococcus sp. (strain CC9605) GN=rplM PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.717e-35
Identity = 68/112 (60.71%), Postives = 88/112 (78.57%), Query Frame = 1
Query:  319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            D+ WYVVDA ++ LGRLA+ +A  +RGK   ++TP +D G +V+VVNAEK+ VSG+K  QK+YRRHSGRPGGMK ETF+ LQ RIPERI+E A++GMLP   LGR++F  LK
Sbjct:   13 DRQWYVVDAENQTLGRLATEVAAVLRGKTNPSFTPHLDTGDFVVVVNAEKIKVSGRKPQQKLYRRHSGRPGGMKVETFEALQERIPERIVEKAIKGMLPHNALGRQMFRKLK 124          
The following BLAST results are available for this feature:
BLAST of CF417326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_PROM58.789e-3665.1850S ribosomal protein L13 OS=Prochlorococcus marin... [more]
RL13_PROM08.789e-3665.1850S ribosomal protein L13 OS=Prochlorococcus marin... [more]
RL13_SYNJA1.148e-3566.9750S ribosomal protein L13 OS=Synechococcus sp. (st... [more]
RL13_TRIEI1.499e-3566.6750S ribosomal protein L13 OS=Trichodesmium erythra... [more]
RL13_SYNPX1.499e-3561.6150S ribosomal protein L13 OS=Synechococcus sp. (st... [more]
RL13_PROMP1.499e-3564.2950S ribosomal protein L13 OS=Prochlorococcus marin... [more]
RL13_SYNS92.557e-3561.6150S ribosomal protein L13 OS=Synechococcus sp. (st... [more]
RL13_PROMT5.697e-3562.5050S ribosomal protein L13 OS=Prochlorococcus marin... [more]
RL13_PROM15.697e-3562.5050S ribosomal protein L13 OS=Prochlorococcus marin... [more]
RL13_SYNSC9.717e-3560.7150S ribosomal protein L13 OS=Synechococcus sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-256 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417326 ID=CF417326; Name=CF417326; organism=Citrus sinensis; type=EST; length=654bp
AAAATGGCAACCCTCTGTACGCCAACTTGTGTAATCTTCTCATCATTACA
ATCATCATCATCTTCTTCTTCTTCATTCAAGACACTCAACACAGGCACTA
CCATCAGTTCTAGCACAACCCCATTCTTCGGGTTCTCTGTTGCTTCAGCG
AAATCGACATCGCCTTTGAACACCAAGCGATCGTTTAAGGTTCGCTGCTG
CCAGAACCTCTCTCTTGTCCCCGACAACCAACGCTGGATGTTCGAGCAGT
CCGAAGTTAATGGACCAGACATTTGGAACAATACATGGTATCCAAAAGCT
GCTGATCACAGGCATTCAGATAAAACATGGTATGTGGTTGATGCAACCGA
TAAGATTCTTGGGAGACTTGCATCCACTATTGCCATTCATATTCGTGGAA
AGAATCTCGCCACCTACACTCCTAGTGTGGACATGGGAGCATATGTGATT
GTGGTGAATGCTGAAAAAGTTGCTGTATCTGGGAAGAAGAGGACACAAAA
GATCTACAGAAGGCATTCAGGGAGACCTGGTGGTATGAAAGAGGAAACAT
TTGACCAGCTACAGCATAGAATCCCAGAAAGAATTATTGAGCATGCTGTT
CGCGGAATGCTTCCGAAAGGGAGGCTTGGTAGAGAACTGTTCACCCATCT
AAAG
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