CF417326
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_PROM5 (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplM PE=3 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 8.789e-36 Identity = 73/112 (65.18%), Postives = 88/112 (78.57%), Query Frame = 1 Query: 319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 ++ W++VDA DK LGRLA+ IA +RGKN T+TP +D G +VIVVNAEKV V+GKK +QK+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP LGR+ F LK Sbjct: 13 ERNWFLVDAKDKTLGRLATEIASVLRGKNKPTFTPHLDTGDFVIVVNAEKVEVTGKKTSQKLYRRHSGRPGGMKVEKFESLQERIPERIIEQAVKGMLPHNSLGRQQFKKLK 124
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_PROM0 (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplM PE=3 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 8.789e-36 Identity = 73/112 (65.18%), Postives = 88/112 (78.57%), Query Frame = 1 Query: 319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 ++ W++VDA DK LGRLA+ IA +RGKN T+TP +D G +VIVVNAEKV V+GKK +QK+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP LGR+ F LK Sbjct: 13 ERNWFLVDAKDKTLGRLATEIATVLRGKNKPTFTPHLDTGDFVIVVNAEKVEVTGKKASQKLYRRHSGRPGGMKIEKFESLQERIPERIIEQAVKGMLPHNSLGRQQFKKLK 124
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SYNJA (50S ribosomal protein L13 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplM PE=3 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.148e-35 Identity = 73/109 (66.97%), Postives = 87/109 (79.82%), Query Frame = 1 Query: 328 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 WY+VDA ++ LGRLA +A +RGK+ +TP +D G YVIV+NAEKV V+GKKRTQK+YRRHSGRPGGMK ETF QLQ R+PER+IE AV+GMLP RLGR FT LK Sbjct: 16 WYLVDAANQRLGRLAVVVAKLLRGKHKPNFTPHLDTGDYVIVINAEKVVVTGKKRTQKLYRRHSGRPGGMKVETFAQLQARLPERVIEKAVKGMLPHTRLGRRQFTKLK 124
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_TRIEI (50S ribosomal protein L13 OS=Trichodesmium erythraeum (strain IMS101) GN=rplM PE=3 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 1.499e-35 Identity = 74/111 (66.67%), Postives = 87/111 (78.38%), Query Frame = 1 Query: 322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 K WYV+DA + LGRLA+ IA+ IRGKN TYTP +D G +VIVVNAEKV V+GKK +QK+YRRHSGRPGGMK E F +LQ R+P+RIIE AV GMLPK LGR+L LK Sbjct: 14 KKWYVIDAEGQRLGRLATAIAMIIRGKNKPTYTPHMDTGDFVIVVNAEKVTVTGKKSSQKLYRRHSGRPGGMKTEVFSKLQARLPQRIIEEAVFGMLPKNSLGRKLHNKLK 124
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SYNPX (50S ribosomal protein L13 OS=Synechococcus sp. (strain WH8102) GN=rplM PE=3 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 1.499e-35 Identity = 69/112 (61.61%), Postives = 89/112 (79.46%), Query Frame = 1 Query: 319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 ++ WY+VDA +K LGRLA+ +A +RGKN ++TP +D G +V+VVNAEK+ VSG K TQK+YRRHSGRPGGMK ETF+ LQ RIPERI+E A++GMLP LGR++F LK Sbjct: 13 ERQWYLVDAENKTLGRLATEVAAVLRGKNNPSFTPHLDTGDFVVVVNAEKIRVSGSKPTQKLYRRHSGRPGGMKTETFEALQDRIPERIVEKAIKGMLPHNALGRQMFRKLK 124
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_PROMP (50S ribosomal protein L13 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplM PE=3 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 1.499e-35 Identity = 72/112 (64.29%), Postives = 88/112 (78.57%), Query Frame = 1 Query: 319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 ++ W++VDA DK LGRL++ IA +RGKN T+TP +D G +VIVVNAEKV V+GKK +QK+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP LGR+ F LK Sbjct: 13 ERNWFLVDAKDKTLGRLSTEIAAVLRGKNKPTFTPHLDTGDFVIVVNAEKVEVTGKKASQKLYRRHSGRPGGMKVEKFESLQERIPERIIEQAVKGMLPHNSLGRQQFKKLK 124
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SYNS9 (50S ribosomal protein L13 OS=Synechococcus sp. (strain CC9902) GN=rplM PE=3 SV=2) HSP 1 Score: 148.673 bits (374), Expect = 2.557e-35 Identity = 69/112 (61.61%), Postives = 88/112 (78.57%), Query Frame = 1 Query: 319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 D+ WYVVDA ++ LGRLA+ +A +RGKN +TP +D G +V+VVNAEK+ VSGKK QK+YRRHSGRPGGMK ETF+ LQ RIPERI+E A++GMLP LGR+++ LK Sbjct: 13 DRQWYVVDAENQTLGRLATEVASILRGKNNPNFTPHLDTGDFVVVVNAEKIQVSGKKPQQKLYRRHSGRPGGMKVETFESLQERIPERIVEKAIKGMLPHNALGRQMYRKLK 124
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_PROMT (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain NATL2A) GN=rplM PE=3 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 5.697e-35 Identity = 70/112 (62.50%), Postives = 88/112 (78.57%), Query Frame = 1 Query: 319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 D+ W++VDA ++ LGRLA+ +A +RGK +TP +D G +VIVVNAEK+ V+GKK QK+YRRHSGRPGGMK ETF LQ RIPERI+E A++GMLP RLGR+LFT LK Sbjct: 13 DRQWFLVDAENQTLGRLATEVASVLRGKTKPNFTPHLDTGDFVIVVNAEKIKVTGKKSDQKLYRRHSGRPGGMKVETFKALQSRIPERIVEKAIKGMLPHTRLGRQLFTKLK 124
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_PROM1 (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain NATL1A) GN=rplM PE=3 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 5.697e-35 Identity = 70/112 (62.50%), Postives = 88/112 (78.57%), Query Frame = 1 Query: 319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 D+ W++VDA ++ LGRLA+ +A +RGK +TP +D G +VIVVNAEK+ V+GKK QK+YRRHSGRPGGMK ETF LQ RIPERI+E A++GMLP RLGR+LFT LK Sbjct: 13 DRQWFLVDAENQTLGRLATEVASVLRGKTKPNFTPHLDTGDFVIVVNAEKIKVTGKKSDQKLYRRHSGRPGGMKVETFKALQSRIPERIVEKAIKGMLPHTRLGRQLFTKLK 124
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SYNSC (50S ribosomal protein L13 OS=Synechococcus sp. (strain CC9605) GN=rplM PE=3 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 9.717e-35 Identity = 68/112 (60.71%), Postives = 88/112 (78.57%), Query Frame = 1 Query: 319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 D+ WYVVDA ++ LGRLA+ +A +RGK ++TP +D G +V+VVNAEK+ VSG+K QK+YRRHSGRPGGMK ETF+ LQ RIPERI+E A++GMLP LGR++F LK Sbjct: 13 DRQWYVVDAENQTLGRLATEVAAVLRGKTNPSFTPHLDTGDFVVVVNAEKIKVSGRKPQQKLYRRHSGRPGGMKVETFEALQERIPERIVEKAIKGMLPHNALGRQMFRKLK 124 The following BLAST results are available for this feature:
BLAST of CF417326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417326 ID=CF417326; Name=CF417326; organism=Citrus sinensis; type=EST; length=654bpback to top |