CF417326

Overview
NameCF417326
Unique NameCF417326
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_PROMA (50S ribosomal protein L13 OS=Prochlorococcus marinus GN=rplM PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.717e-35
Identity = 68/112 (60.71%), Postives = 89/112 (79.46%), Query Frame = 1
Query:  319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            ++ WY+VDA ++ LGRLA+ +A  +RGKN  ++TP +D G +VI+VNAEK+ V+GKK  QK+YRRHSGRPGGMK ETF+ LQ RIPERI+E A++GMLP   LGR+LF  LK
Sbjct:   13 NRQWYLVDAENQTLGRLATEVASVLRGKNKPSFTPHLDTGDFVIIVNAEKIKVTGKKGMQKLYRRHSGRPGGMKVETFNSLQERIPERIVEKAIKGMLPHNALGRQLFRKLK 124          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_PROM2 (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplM PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.717e-35
Identity = 71/112 (63.39%), Postives = 88/112 (78.57%), Query Frame = 1
Query:  319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            ++ W++VDA +K LGRLA+ IA  +RGKN  T+TP +D G +VIVVNAEKV V+GKK +QK+YRRHSGRPGGMK E F+ L+ RIPERIIE AV+GMLP   LGR+ F  LK
Sbjct:   13 ERNWFLVDAKNKTLGRLATEIATLLRGKNKPTFTPHLDTGDFVIVVNAEKVEVTGKKASQKLYRRHSGRPGGMKIEKFESLKERIPERIIEQAVKGMLPHNSLGRQQFKKLK 124          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SYNPW (50S ribosomal protein L13 OS=Synechococcus sp. (strain WH7803) GN=rplM PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.269e-34
Identity = 67/112 (59.82%), Postives = 88/112 (78.57%), Query Frame = 1
Query:  319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            D+ WY+VDA ++ LGRLA+ +A  +RGKN A++TP +D G +V+VVNA+K+ VSG K  QK+YRRHSGRPGGMK ETF  LQ R+PERI+E A++GMLP   LGR++F  LK
Sbjct:   13 DRQWYLVDAENQTLGRLATEVASVLRGKNKASFTPHLDTGDFVVVVNADKIRVSGNKPQQKLYRRHSGRPGGMKVETFTHLQERLPERIVEKAIKGMLPHNALGRQMFRKLK 124          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RK13_PORPU (50S ribosomal protein L13, chloroplastic OS=Porphyra purpurea GN=rpl13 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.269e-34
Identity = 67/113 (59.29%), Postives = 93/113 (82.30%), Query Frame = 1
Query:  316 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + ++WYV+DA ++ LGR+++ I+  +RGKN  +YTP +D G YVIV+N+ +V+VSG K TQK+YRRHSG+PGG+K ETF+QLQ R+P RI+E +V+GMLPKG LGR+LFT LK
Sbjct:   11 TSQSWYVIDAKNQKLGRMSTHISNILRGKNKPSYTPYLDTGDYVIVINSSEVSVSGNKTTQKLYRRHSGQPGGLKVETFEQLQTRLPNRIVEKSVKGMLPKGPLGRKLFTKLK 123          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RK13_PORYE (50S ribosomal protein L13, chloroplastic OS=Porphyra yezoensis GN=rpl13 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.658e-34
Identity = 72/126 (57.14%), Postives = 93/126 (73.81%), Query Frame = 1
Query:  277 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            N T  P    + H    WYV+DA ++ LGR+++ I+  +RGKN  +YTP +D G YVIV+N+  V+VSG K  QK+YRRHSG+PGG+K ETFDQLQ R+P RIIE +V+GMLPKG LGR+LFT LK
Sbjct:    2 NKTQSPSLNTNSH----WYVIDAKNQTLGRISTHISNILRGKNKPSYTPYLDTGDYVIVINSAHVSVSGNKTNQKLYRRHSGQPGGLKVETFDQLQTRLPNRIIEKSVKGMLPKGPLGRKLFTKLK 123          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SYNR3 (50S ribosomal protein L13 OS=Synechococcus sp. (strain RCC307) GN=rplM PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.165e-34
Identity = 68/112 (60.71%), Postives = 87/112 (77.68%), Query Frame = 1
Query:  319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            ++ WYVVDA ++ LGRLA+ +A  +RGKN  TYTP +D G +V+V+NA+KV V+G K + K+YRRHSGRPGGMK ETF  LQ RIPERI+E A++GMLP   LGR+LF  LK
Sbjct:   13 ERHWYVVDAENQCLGRLATEVASVLRGKNKPTYTPHLDTGDFVVVINADKVKVTGNKASDKLYRRHSGRPGGMKVETFAALQQRIPERIVEKAIKGMLPHNALGRQLFRKLK 124          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_PROMM (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplM PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.833e-33
Identity = 65/112 (58.04%), Postives = 87/112 (77.68%), Query Frame = 1
Query:  319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            ++ W++VDA ++ LGRLA+ +A  +RGKN  ++TP +D G +V+VVNA+K+ VSG K  QK+YRRHSGRPGGMK ETF  LQ R+PERI+E A++GMLP   LGR+LF  LK
Sbjct:   13 ERQWFLVDAENQTLGRLATEVASVLRGKNKPSFTPHLDTGDFVVVVNADKIRVSGNKANQKLYRRHSGRPGGMKVETFQALQDRLPERIVEKAIKGMLPHNALGRQLFRKLK 124          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_PROM3 (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplM PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.833e-33
Identity = 65/112 (58.04%), Postives = 87/112 (77.68%), Query Frame = 1
Query:  319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            ++ W++VDA ++ LGRLA+ +A  +RGKN  ++TP +D G +V+VVNA+K+ VSG K  QK+YRRHSGRPGGMK ETF  LQ R+PERI+E A++GMLP   LGR+LF  LK
Sbjct:   13 ERQWFLVDAENQTLGRLATEVASVLRGKNKPSFTPHLDTGDFVVVVNADKIRVSGNKANQKLYRRHSGRPGGMKVETFQALQDRLPERIVEKAIKGMLPHNALGRQLFRKLK 124          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_CITK8 (50S ribosomal protein L13 OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=rplM PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.188e-32
Identity = 66/111 (59.46%), Postives = 86/111 (77.48%), Query Frame = 1
Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDAT K LGRLA+ +A+ +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG LGR +F  LK
Sbjct:   13 RDWYVVDATGKTLGRLATELALRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLK 123          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_YERE8 (50S ribosomal protein L13 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rplM PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.026e-32
Identity = 67/111 (60.36%), Postives = 85/111 (76.58%), Query Frame = 1
Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDA  K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NAEKVAV+G KRT KIY RH+G  GG+K+ TF+++  R PER+IE AV+GMLPKG LGR ++  LK
Sbjct:   13 RDWYVVDANGKTLGRLATELASRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRTDKIYYRHTGHIGGIKQATFEEMIARSPERVIEIAVKGMLPKGPLGRAMYRKLK 123          
The following BLAST results are available for this feature:
BLAST of CF417326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_PROMA9.717e-3560.7150S ribosomal protein L13 OS=Prochlorococcus marin... [more]
RL13_PROM29.717e-3563.3950S ribosomal protein L13 OS=Prochlorococcus marin... [more]
RL13_SYNPW1.269e-3459.8250S ribosomal protein L13 OS=Synechococcus sp. (st... [more]
RK13_PORPU1.269e-3459.2950S ribosomal protein L13, chloroplastic OS=Porphy... [more]
RK13_PORYE1.658e-3457.1450S ribosomal protein L13, chloroplastic OS=Porphy... [more]
RL13_SYNR32.165e-3460.7150S ribosomal protein L13 OS=Synechococcus sp. (st... [more]
RL13_PROMM1.833e-3358.0450S ribosomal protein L13 OS=Prochlorococcus marin... [more]
RL13_PROM31.833e-3358.0450S ribosomal protein L13 OS=Prochlorococcus marin... [more]
RL13_CITK81.188e-3259.4650S ribosomal protein L13 OS=Citrobacter koseri (s... [more]
RL13_YERE82.026e-3260.3650S ribosomal protein L13 OS=Yersinia enterocoliti... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-256 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417326 ID=CF417326; Name=CF417326; organism=Citrus sinensis; type=EST; length=654bp
AAAATGGCAACCCTCTGTACGCCAACTTGTGTAATCTTCTCATCATTACA
ATCATCATCATCTTCTTCTTCTTCATTCAAGACACTCAACACAGGCACTA
CCATCAGTTCTAGCACAACCCCATTCTTCGGGTTCTCTGTTGCTTCAGCG
AAATCGACATCGCCTTTGAACACCAAGCGATCGTTTAAGGTTCGCTGCTG
CCAGAACCTCTCTCTTGTCCCCGACAACCAACGCTGGATGTTCGAGCAGT
CCGAAGTTAATGGACCAGACATTTGGAACAATACATGGTATCCAAAAGCT
GCTGATCACAGGCATTCAGATAAAACATGGTATGTGGTTGATGCAACCGA
TAAGATTCTTGGGAGACTTGCATCCACTATTGCCATTCATATTCGTGGAA
AGAATCTCGCCACCTACACTCCTAGTGTGGACATGGGAGCATATGTGATT
GTGGTGAATGCTGAAAAAGTTGCTGTATCTGGGAAGAAGAGGACACAAAA
GATCTACAGAAGGCATTCAGGGAGACCTGGTGGTATGAAAGAGGAAACAT
TTGACCAGCTACAGCATAGAATCCCAGAAAGAATTATTGAGCATGCTGTT
CGCGGAATGCTTCCGAAAGGGAGGCTTGGTAGAGAACTGTTCACCCATCT
AAAG
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