CF417326
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_PROMA (50S ribosomal protein L13 OS=Prochlorococcus marinus GN=rplM PE=3 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 9.717e-35 Identity = 68/112 (60.71%), Postives = 89/112 (79.46%), Query Frame = 1 Query: 319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 ++ WY+VDA ++ LGRLA+ +A +RGKN ++TP +D G +VI+VNAEK+ V+GKK QK+YRRHSGRPGGMK ETF+ LQ RIPERI+E A++GMLP LGR+LF LK Sbjct: 13 NRQWYLVDAENQTLGRLATEVASVLRGKNKPSFTPHLDTGDFVIIVNAEKIKVTGKKGMQKLYRRHSGRPGGMKVETFNSLQERIPERIVEKAIKGMLPHNALGRQLFRKLK 124
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_PROM2 (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplM PE=3 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 9.717e-35 Identity = 71/112 (63.39%), Postives = 88/112 (78.57%), Query Frame = 1 Query: 319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 ++ W++VDA +K LGRLA+ IA +RGKN T+TP +D G +VIVVNAEKV V+GKK +QK+YRRHSGRPGGMK E F+ L+ RIPERIIE AV+GMLP LGR+ F LK Sbjct: 13 ERNWFLVDAKNKTLGRLATEIATLLRGKNKPTFTPHLDTGDFVIVVNAEKVEVTGKKASQKLYRRHSGRPGGMKIEKFESLKERIPERIIEQAVKGMLPHNSLGRQQFKKLK 124
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SYNPW (50S ribosomal protein L13 OS=Synechococcus sp. (strain WH7803) GN=rplM PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.269e-34 Identity = 67/112 (59.82%), Postives = 88/112 (78.57%), Query Frame = 1 Query: 319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 D+ WY+VDA ++ LGRLA+ +A +RGKN A++TP +D G +V+VVNA+K+ VSG K QK+YRRHSGRPGGMK ETF LQ R+PERI+E A++GMLP LGR++F LK Sbjct: 13 DRQWYLVDAENQTLGRLATEVASVLRGKNKASFTPHLDTGDFVVVVNADKIRVSGNKPQQKLYRRHSGRPGGMKVETFTHLQERLPERIVEKAIKGMLPHNALGRQMFRKLK 124
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RK13_PORPU (50S ribosomal protein L13, chloroplastic OS=Porphyra purpurea GN=rpl13 PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.269e-34 Identity = 67/113 (59.29%), Postives = 93/113 (82.30%), Query Frame = 1 Query: 316 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 + ++WYV+DA ++ LGR+++ I+ +RGKN +YTP +D G YVIV+N+ +V+VSG K TQK+YRRHSG+PGG+K ETF+QLQ R+P RI+E +V+GMLPKG LGR+LFT LK Sbjct: 11 TSQSWYVIDAKNQKLGRMSTHISNILRGKNKPSYTPYLDTGDYVIVINSSEVSVSGNKTTQKLYRRHSGQPGGLKVETFEQLQTRLPNRIVEKSVKGMLPKGPLGRKLFTKLK 123
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RK13_PORYE (50S ribosomal protein L13, chloroplastic OS=Porphyra yezoensis GN=rpl13 PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 1.658e-34 Identity = 72/126 (57.14%), Postives = 93/126 (73.81%), Query Frame = 1 Query: 277 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 N T P + H WYV+DA ++ LGR+++ I+ +RGKN +YTP +D G YVIV+N+ V+VSG K QK+YRRHSG+PGG+K ETFDQLQ R+P RIIE +V+GMLPKG LGR+LFT LK Sbjct: 2 NKTQSPSLNTNSH----WYVIDAKNQTLGRISTHISNILRGKNKPSYTPYLDTGDYVIVINSAHVSVSGNKTNQKLYRRHSGQPGGLKVETFDQLQTRLPNRIIEKSVKGMLPKGPLGRKLFTKLK 123
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SYNR3 (50S ribosomal protein L13 OS=Synechococcus sp. (strain RCC307) GN=rplM PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 2.165e-34 Identity = 68/112 (60.71%), Postives = 87/112 (77.68%), Query Frame = 1 Query: 319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 ++ WYVVDA ++ LGRLA+ +A +RGKN TYTP +D G +V+V+NA+KV V+G K + K+YRRHSGRPGGMK ETF LQ RIPERI+E A++GMLP LGR+LF LK Sbjct: 13 ERHWYVVDAENQCLGRLATEVASVLRGKNKPTYTPHLDTGDFVVVINADKVKVTGNKASDKLYRRHSGRPGGMKVETFAALQQRIPERIVEKAIKGMLPHNALGRQLFRKLK 124
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_PROMM (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplM PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.833e-33 Identity = 65/112 (58.04%), Postives = 87/112 (77.68%), Query Frame = 1 Query: 319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 ++ W++VDA ++ LGRLA+ +A +RGKN ++TP +D G +V+VVNA+K+ VSG K QK+YRRHSGRPGGMK ETF LQ R+PERI+E A++GMLP LGR+LF LK Sbjct: 13 ERQWFLVDAENQTLGRLATEVASVLRGKNKPSFTPHLDTGDFVVVVNADKIRVSGNKANQKLYRRHSGRPGGMKVETFQALQDRLPERIVEKAIKGMLPHNALGRQLFRKLK 124
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_PROM3 (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplM PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.833e-33 Identity = 65/112 (58.04%), Postives = 87/112 (77.68%), Query Frame = 1 Query: 319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 ++ W++VDA ++ LGRLA+ +A +RGKN ++TP +D G +V+VVNA+K+ VSG K QK+YRRHSGRPGGMK ETF LQ R+PERI+E A++GMLP LGR+LF LK Sbjct: 13 ERQWFLVDAENQTLGRLATEVASVLRGKNKPSFTPHLDTGDFVVVVNADKIRVSGNKANQKLYRRHSGRPGGMKVETFQALQDRLPERIVEKAIKGMLPHNALGRQLFRKLK 124
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_CITK8 (50S ribosomal protein L13 OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=rplM PE=3 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.188e-32 Identity = 66/111 (59.46%), Postives = 86/111 (77.48%), Query Frame = 1 Query: 322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 + WYVVDAT K LGRLA+ +A+ +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y H+G GG+K+ TF+++ R PER+IE AV+GMLPKG LGR +F LK Sbjct: 13 RDWYVVDATGKTLGRLATELALRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLK 123
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_YERE8 (50S ribosomal protein L13 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rplM PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 2.026e-32 Identity = 67/111 (60.36%), Postives = 85/111 (76.58%), Query Frame = 1 Query: 322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 + WYVVDA K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NAEKVAV+G KRT KIY RH+G GG+K+ TF+++ R PER+IE AV+GMLPKG LGR ++ LK Sbjct: 13 RDWYVVDANGKTLGRLATELASRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRTDKIYYRHTGHIGGIKQATFEEMIARSPERVIEIAVKGMLPKGPLGRAMYRKLK 123 The following BLAST results are available for this feature:
BLAST of CF417326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417326 ID=CF417326; Name=CF417326; organism=Citrus sinensis; type=EST; length=654bpback to top |