CF417326
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SALPA (50S ribosomal protein L13 OS=Salmonella paratyphi A GN=rplM PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.514e-32 Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1 Query: 322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 + WYVVDAT K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y H+G GG+K+ TF+++ R PER+IE AV+GMLPKG LGR +F LK Sbjct: 13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLK 123
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SALNS (50S ribosomal protein L13 OS=Salmonella newport (strain SL254) GN=rplM PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.514e-32 Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1 Query: 322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 + WYVVDAT K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y H+G GG+K+ TF+++ R PER+IE AV+GMLPKG LGR +F LK Sbjct: 13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLK 123
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SALHS (50S ribosomal protein L13 OS=Salmonella heidelberg (strain SL476) GN=rplM PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.514e-32 Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1 Query: 322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 + WYVVDAT K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y H+G GG+K+ TF+++ R PER+IE AV+GMLPKG LGR +F LK Sbjct: 13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLK 123
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SALG2 (50S ribosomal protein L13 OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rplM PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.514e-32 Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1 Query: 322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 + WYVVDAT K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y H+G GG+K+ TF+++ R PER+IE AV+GMLPKG LGR +F LK Sbjct: 13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLK 123
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SALEP (50S ribosomal protein L13 OS=Salmonella enteritidis PT4 (strain P125109) GN=rplM PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.514e-32 Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1 Query: 322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 + WYVVDAT K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y H+G GG+K+ TF+++ R PER+IE AV+GMLPKG LGR +F LK Sbjct: 13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLK 123
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SALDC (50S ribosomal protein L13 OS=Salmonella dublin (strain CT_02021853) GN=rplM PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.514e-32 Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1 Query: 322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 + WYVVDAT K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y H+G GG+K+ TF+++ R PER+IE AV+GMLPKG LGR +F LK Sbjct: 13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLK 123
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SALCH (50S ribosomal protein L13 OS=Salmonella choleraesuis GN=rplM PE=3 SV=2) HSP 1 Score: 137.887 bits (346), Expect = 4.514e-32 Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1 Query: 322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 + WYVVDAT K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y H+G GG+K+ TF+++ R PER+IE AV+GMLPKG LGR +F LK Sbjct: 13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLK 123
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SALAR (50S ribosomal protein L13 OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=rplM PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.514e-32 Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1 Query: 322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 + WYVVDAT K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y H+G GG+K+ TF+++ R PER+IE AV+GMLPKG LGR +F LK Sbjct: 13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLK 123
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SALA4 (50S ribosomal protein L13 OS=Salmonella agona (strain SL483) GN=rplM PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.514e-32 Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1 Query: 322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 + WYVVDAT K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y H+G GG+K+ TF+++ R PER+IE AV+GMLPKG LGR +F LK Sbjct: 13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLK 123
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_ESCF3 (50S ribosomal protein L13 OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=rplM PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.514e-32 Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1 Query: 322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 + WYVVDAT K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y H+G GG+K+ TF+++ R PER+IE AV+GMLPKG LGR +F LK Sbjct: 13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLK 123 The following BLAST results are available for this feature:
BLAST of CF417326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417326 ID=CF417326; Name=CF417326; organism=Citrus sinensis; type=EST; length=654bpback to top |