CF417326 | Citrus Genome Database

Overview


Name	CF417326
Unique Name	CF417326
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	654

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CF417326_ssr51	microsatellite	CF417326_ssr51:51..62.	BLAST: Citrus ESTs to Prunus persica proteins V1
CF417326_ssr63	microsatellite	CF417326_ssr63:63..74.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig882	contig	Csv1_Contig882:36..686.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_ECODH (50S ribosomal protein L13 OS=Escherichia coli (strain K12 / DH10B) GN=rplM PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.514e-32
Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1

Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG LGR +F  LK
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLK 123

[Close]

BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_ECOBW (50S ribosomal protein L13 OS=Escherichia coli (strain K12 / BW2952) GN=rplM PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.514e-32
Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1

Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG LGR +F  LK
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLK 123

[Close]

BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_ECO8A (50S ribosomal protein L13 OS=Escherichia coli O8 (strain IAI1) GN=rplM PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.514e-32
Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1

Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG LGR +F  LK
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLK 123

[Close]

BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_ECO81 (50S ribosomal protein L13 OS=Escherichia coli O81 (strain ED1a) GN=rplM PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.514e-32
Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1

Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG LGR +F  LK
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLK 123

[Close]

BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_ECO7I (50S ribosomal protein L13 OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rplM PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.514e-32
Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1

Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG LGR +F  LK
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLK 123

[Close]

BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_ECO5E (50S ribosomal protein L13 OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rplM PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.514e-32
Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1

Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG LGR +F  LK
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLK 123

[Close]

BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_ECO57 (50S ribosomal protein L13 OS=Escherichia coli O157:H7 GN=rplM PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.514e-32
Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1

Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG LGR +F  LK
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLK 123

[Close]

BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_ECO55 (50S ribosomal protein L13 OS=Escherichia coli (strain 55989 / EAEC) GN=rplM PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.514e-32
Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1

Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG LGR +F  LK
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLK 123

[Close]

BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_ECO45 (50S ribosomal protein L13 OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rplM PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.514e-32
Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1

Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG LGR +F  LK
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLK 123

[Close]

BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_ECO27 (50S ribosomal protein L13 OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=rplM PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.514e-32
Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1

Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG LGR +F  LK
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLK 123

The following BLAST results are available for this feature:

BLAST of CF417326 vs. ExPASy Swiss-Prot

BLAST of CF417326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RL13_ECODH	4.514e-32	59.46	50S ribosomal protein L13 OS=Escherichia coli (str...	[more]
RL13_ECOBW	4.514e-32	59.46	50S ribosomal protein L13 OS=Escherichia coli (str...	[more]
RL13_ECO8A	4.514e-32	59.46	50S ribosomal protein L13 OS=Escherichia coli O8 (...	[more]
RL13_ECO81	4.514e-32	59.46	50S ribosomal protein L13 OS=Escherichia coli O81 ...	[more]
RL13_ECO7I	4.514e-32	59.46	50S ribosomal protein L13 OS=Escherichia coli O7:K...	[more]
RL13_ECO5E	4.514e-32	59.46	50S ribosomal protein L13 OS=Escherichia coli O157...	[more]
RL13_ECO57	4.514e-32	59.46	50S ribosomal protein L13 OS=Escherichia coli O157...	[more]
RL13_ECO55	4.514e-32	59.46	50S ribosomal protein L13 OS=Escherichia coli (str...	[more]
RL13_ECO45	4.514e-32	59.46	50S ribosomal protein L13 OS=Escherichia coli O45:...	[more]
RL13_ECO27	4.514e-32	59.46	50S ribosomal protein L13 OS=Escherichia coli O127...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_115000-256 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_A03 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417326 ID=CF417326; Name=CF417326; organism=Citrus sinensis; type=EST; length=654bp
AAAATGGCAACCCTCTGTACGCCAACTTGTGTAATCTTCTCATCATTACA
ATCATCATCATCTTCTTCTTCTTCATTCAAGACACTCAACACAGGCACTA
CCATCAGTTCTAGCACAACCCCATTCTTCGGGTTCTCTGTTGCTTCAGCG
AAATCGACATCGCCTTTGAACACCAAGCGATCGTTTAAGGTTCGCTGCTG
CCAGAACCTCTCTCTTGTCCCCGACAACCAACGCTGGATGTTCGAGCAGT
CCGAAGTTAATGGACCAGACATTTGGAACAATACATGGTATCCAAAAGCT
GCTGATCACAGGCATTCAGATAAAACATGGTATGTGGTTGATGCAACCGA
TAAGATTCTTGGGAGACTTGCATCCACTATTGCCATTCATATTCGTGGAA
AGAATCTCGCCACCTACACTCCTAGTGTGGACATGGGAGCATATGTGATT
GTGGTGAATGCTGAAAAAGTTGCTGTATCTGGGAAGAAGAGGACACAAAA
GATCTACAGAAGGCATTCAGGGAGACCTGGTGGTATGAAAGAGGAAACAT
TTGACCAGCTACAGCATAGAATCCCAGAAAGAATTATTGAGCATGCTGTT
CGCGGAATGCTTCCGAAAGGGAGGCTTGGTAGAGAACTGTTCACCCATCT
AAAG