CF417326 | Citrus Genome Database

Overview


Name	CF417326
Unique Name	CF417326
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	654

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_YERPY (50S ribosomal protein L13 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=rplM PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.715e-31
Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1

Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDA+ K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NAEKVAV+G KRT KIY  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG LGR ++  LK
Sbjct:   13 RDWYVVDASGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRTDKIYYHHTGFVGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMYRKLK 123

[Close]

BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_YERPS (50S ribosomal protein L13 OS=Yersinia pseudotuberculosis GN=rplM PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.715e-31
Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1

Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDA+ K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NAEKVAV+G KRT KIY  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG LGR ++  LK
Sbjct:   13 RDWYVVDASGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRTDKIYYHHTGFVGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMYRKLK 123

[Close]

BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_YERPP (50S ribosomal protein L13 OS=Yersinia pestis (strain Pestoides F) GN=rplM PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.715e-31
Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1

Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDA+ K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NAEKVAV+G KRT KIY  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG LGR ++  LK
Sbjct:   13 RDWYVVDASGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRTDKIYYHHTGFVGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMYRKLK 123

[Close]

BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_YERPN (50S ribosomal protein L13 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rplM PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.715e-31
Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1

Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDA+ K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NAEKVAV+G KRT KIY  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG LGR ++  LK
Sbjct:   13 RDWYVVDASGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRTDKIYYHHTGFVGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMYRKLK 123

[Close]

BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_YERPG (50S ribosomal protein L13 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rplM PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.715e-31
Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1

Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDA+ K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NAEKVAV+G KRT KIY  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG LGR ++  LK
Sbjct:   13 RDWYVVDASGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRTDKIYYHHTGFVGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMYRKLK 123

[Close]

BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_YERPE (50S ribosomal protein L13 OS=Yersinia pestis GN=rplM PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.715e-31
Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1

Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDA+ K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NAEKVAV+G KRT KIY  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG LGR ++  LK
Sbjct:   13 RDWYVVDASGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRTDKIYYHHTGFVGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMYRKLK 123

[Close]

BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_YERPB (50S ribosomal protein L13 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rplM PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.715e-31
Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1

Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDA+ K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NAEKVAV+G KRT KIY  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG LGR ++  LK
Sbjct:   13 RDWYVVDASGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRTDKIYYHHTGFVGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMYRKLK 123

[Close]

BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_YERPA (50S ribosomal protein L13 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rplM PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.715e-31
Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1

Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDA+ K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NAEKVAV+G KRT KIY  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG LGR ++  LK
Sbjct:   13 RDWYVVDASGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRTDKIYYHHTGFVGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMYRKLK 123

[Close]

BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_YERP3 (50S ribosomal protein L13 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rplM PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.715e-31
Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1

Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDA+ K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NAEKVAV+G KRT KIY  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG LGR ++  LK
Sbjct:   13 RDWYVVDASGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRTDKIYYHHTGFVGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMYRKLK 123

[Close]

BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_SHISS (50S ribosomal protein L13 OS=Shigella sonnei (strain Ss046) GN=rplM PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.715e-31
Identity = 65/111 (58.56%), Postives = 85/111 (76.58%), Query Frame = 1

Query:  322 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ +F+++  R PER+IE AV+GMLPKG LGR +F  LK
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQVSFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLK 123

The following BLAST results are available for this feature:

BLAST of CF417326 vs. ExPASy Swiss-Prot

BLAST of CF417326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RL13_YERPY	1.715e-31	59.46	50S ribosomal protein L13 OS=Yersinia pseudotuberc...	[more]
RL13_YERPS	1.715e-31	59.46	50S ribosomal protein L13 OS=Yersinia pseudotuberc...	[more]
RL13_YERPP	1.715e-31	59.46	50S ribosomal protein L13 OS=Yersinia pestis (stra...	[more]
RL13_YERPN	1.715e-31	59.46	50S ribosomal protein L13 OS=Yersinia pestis bv. A...	[more]
RL13_YERPG	1.715e-31	59.46	50S ribosomal protein L13 OS=Yersinia pestis bv. A...	[more]
RL13_YERPE	1.715e-31	59.46	50S ribosomal protein L13 OS=Yersinia pestis GN=rp...	[more]
RL13_YERPB	1.715e-31	59.46	50S ribosomal protein L13 OS=Yersinia pseudotuberc...	[more]
RL13_YERPA	1.715e-31	59.46	50S ribosomal protein L13 OS=Yersinia pestis bv. A...	[more]
RL13_YERP3	1.715e-31	59.46	50S ribosomal protein L13 OS=Yersinia pseudotuberc...	[more]
RL13_SHISS	1.715e-31	58.56	50S ribosomal protein L13 OS=Shigella sonnei (stra...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-256 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_A03 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417326 ID=CF417326; Name=CF417326; organism=Citrus sinensis; type=EST; length=654bp
AAAATGGCAACCCTCTGTACGCCAACTTGTGTAATCTTCTCATCATTACA
ATCATCATCATCTTCTTCTTCTTCATTCAAGACACTCAACACAGGCACTA
CCATCAGTTCTAGCACAACCCCATTCTTCGGGTTCTCTGTTGCTTCAGCG
AAATCGACATCGCCTTTGAACACCAAGCGATCGTTTAAGGTTCGCTGCTG
CCAGAACCTCTCTCTTGTCCCCGACAACCAACGCTGGATGTTCGAGCAGT
CCGAAGTTAATGGACCAGACATTTGGAACAATACATGGTATCCAAAAGCT
GCTGATCACAGGCATTCAGATAAAACATGGTATGTGGTTGATGCAACCGA
TAAGATTCTTGGGAGACTTGCATCCACTATTGCCATTCATATTCGTGGAA
AGAATCTCGCCACCTACACTCCTAGTGTGGACATGGGAGCATATGTGATT
GTGGTGAATGCTGAAAAAGTTGCTGTATCTGGGAAGAAGAGGACACAAAA
GATCTACAGAAGGCATTCAGGGAGACCTGGTGGTATGAAAGAGGAAACAT
TTGACCAGCTACAGCATAGAATCCCAGAAAGAATTATTGAGCATGCTGTT
CGCGGAATGCTTCCGAAAGGGAGGCTTGGTAGAGAACTGTTCACCCATCT
AAAG