CF417335

Overview
NameCF417335
Unique NameCF417335
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417335 vs. ExPASy Swiss-Prot
Match: RS4X_CERAE (40S ribosomal protein S4, X isoform OS=Cercopithecus aethiops GN=RPS4X PE=2 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 2.648e-37
Identity = 69/103 (66.99%), Postives = 86/103 (83.50%), Query Frame = 3
Query:    3 LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 311
            LIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  153 LIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of CF417335 vs. ExPASy Swiss-Prot
Match: RS4X_DANRE (40S ribosomal protein S4, X isoform OS=Danio rerio GN=rps4x PE=2 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 4.516e-37
Identity = 67/103 (65.05%), Postives = 87/103 (84.47%), Query Frame = 3
Query:    3 LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 311
            LIK NDTI++DL+  KITDFIKF+ GN+ MVTGG N GR+G+I NREKH GSF+ +H++D++G+ FATRL N+F IGKG+KPWVSLP+GKG++L+I EE  KR
Sbjct:  153 LIKVNDTIRIDLDTGKITDFIKFETGNMCMVTGGANLGRIGVITNREKHPGSFDVVHVKDSIGNSFATRLSNIFVIGKGNKPWVSLPRGKGVRLTIAEERDKR 255          
BLAST of CF417335 vs. ExPASy Swiss-Prot
Match: RS4Y1_MONDO (40S ribosomal protein S4, Y isoform 1 OS=Monodelphis domestica GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 5.898e-37
Identity = 68/103 (66.02%), Postives = 86/103 (83.50%), Query Frame = 3
Query:    3 LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 311
            LIK NDT++++LE  KITDFIKFD GN+ MVTGG N GR+G+I NREKH GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  153 LIKVNDTVQINLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of CF417335 vs. ExPASy Swiss-Prot
Match: RS4_ICTPU (40S ribosomal protein S4 OS=Ictalurus punctatus GN=rps4 PE=2 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 6.521e-36
Identity = 65/103 (63.11%), Postives = 86/103 (83.50%), Query Frame = 3
Query:    3 LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 311
            +IKANDT+++DLE  KIT+FIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++D+ G+ FATRL N+F IGKG+K WVS+P+GKGI+L+I EE  KR
Sbjct:  153 MIKANDTVRIDLETGKITEFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNKAWVSIPRGKGIRLTIAEERDKR 255          
BLAST of CF417335 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 5.521e-35
Identity = 67/103 (65.05%), Postives = 85/103 (82.52%), Query Frame = 3
Query:    3 LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 311
            LI AND++++D+   KITD+IKFD GN+ M+TGGRN GRVG + NRE+H GSF+ +HI+D+ GH FATRL NVF IGKG+KP++SLPKGKG+KLSI EE  KR
Sbjct:  153 LIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKLSIAEERDKR 255          
BLAST of CF417335 vs. ExPASy Swiss-Prot
Match: RS4Y1_MACFU (40S ribosomal protein S4, Y isoform 1 OS=Macaca fuscata fuscata GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 2.098e-34
Identity = 63/103 (61.17%), Postives = 82/103 (79.61%), Query Frame = 3
Query:    3 LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 311
            +IK NDT+++DL   KIT FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATR+ N+F IG G+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  153 VIKVNDTVRIDLGSGKITSFIKFDTGNVCMVIGGANLGRVGVITNRERHPGSFDVVHVKDASGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of CF417335 vs. ExPASy Swiss-Prot
Match: RS4Y1_PONPY (40S ribosomal protein S4, Y isoform 1 OS=Pongo pygmaeus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 7.972e-34
Identity = 63/103 (61.17%), Postives = 82/103 (79.61%), Query Frame = 3
Query:    3 LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 311
            LIK NDT+++DL   KI +FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATR+ N+F IG G+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  153 LIKVNDTVQIDLGTGKIINFIKFDTGNVCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of CF417335 vs. ExPASy Swiss-Prot
Match: RS4B_SCHPO (40S ribosomal protein S4-B OS=Schizosaccharomyces pombe GN=rps4b PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.041e-33
Identity = 71/103 (68.93%), Postives = 79/103 (76.70%), Query Frame = 3
Query:    3 LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 311
            LIK NDTIKL+LE NKI  FIKFD    VMVTGGRN GRVG I +RE H GSFE IH++DAL  EFATRL NVF IG+  K W+SLPKGKG+KLSI EE  +R
Sbjct:  153 LIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLPKGKGVKLSITEERDRR 255          
BLAST of CF417335 vs. ExPASy Swiss-Prot
Match: RS4Y1_HUMAN (40S ribosomal protein S4, Y isoform 1 OS=Homo sapiens GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 1.776e-33
Identity = 62/103 (60.19%), Postives = 82/103 (79.61%), Query Frame = 3
Query:    3 LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 311
            +IK NDT+++DL   KI +FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATRL N+F IG G+KPW+SLP+GKGI+L++ EE  KR
Sbjct:  153 VIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAEERDKR 255          
BLAST of CF417335 vs. ExPASy Swiss-Prot
Match: RS4C_SCHPO (40S ribosomal protein S4-C OS=Schizosaccharomyces pombe GN=rps4c PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.776e-33
Identity = 71/103 (68.93%), Postives = 79/103 (76.70%), Query Frame = 3
Query:    3 LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 311
            LIK NDTIKL+LE NKI  FIKFD    VMVTGGRN GRVG I +RE H GSFE IH++DAL  EFATRL NVF IG+  K W+SLPKGKG+KLSI EE  +R
Sbjct:  153 LIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRR 255          
The following BLAST results are available for this feature:
BLAST of CF417335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
RS4X_CERAE2.648e-3766.9940S ribosomal protein S4, X isoform OS=Cercopithec... [more]
RS4X_DANRE4.516e-3765.0540S ribosomal protein S4, X isoform OS=Danio rerio... [more]
RS4Y1_MONDO5.898e-3766.0240S ribosomal protein S4, Y isoform 1 OS=Monodelph... [more]
RS4_ICTPU6.521e-3663.1140S ribosomal protein S4 OS=Ictalurus punctatus GN... [more]
RS4_DROME5.521e-3565.0540S ribosomal protein S4 OS=Drosophila melanogaste... [more]
RS4Y1_MACFU2.098e-3461.1740S ribosomal protein S4, Y isoform 1 OS=Macaca fu... [more]
RS4Y1_PONPY7.972e-3461.1740S ribosomal protein S4, Y isoform 1 OS=Pongo pyg... [more]
RS4B_SCHPO1.041e-3368.9340S ribosomal protein S4-B OS=Schizosaccharomyces ... [more]
RS4Y1_HUMAN1.776e-3360.1940S ribosomal protein S4, Y isoform 1 OS=Homo sapi... [more]
RS4C_SCHPO1.776e-3368.9340S ribosomal protein S4-C OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-265 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417335 ID=CF417335; Name=CF417335; organism=Citrus sinensis; type=EST; length=568bp
CACTCATCAAAGCCAATGATACCATCAAACTTGACTTAGAAGAGAACAAG
ATCACTGACTTCATCAAGTTTGATGTTGGGAATATTGTCATGGTCACTGG
GGGTAGAAACAGAGGTCGGGTTGGAATCATCAAGAACAGGGAAAAGCATA
AGGGAAGTTTTGAGACCATCCATATTCAAGATGCCCTTGGTCATGAGTTT
GCAACTCGTCTAGGCAATGTGTTCACCATCGGGAAGGGTTCAAAACCATG
GGTGTCACTTCCTAAGGGCAAGGGTATTAAGTTGTCCATCATTGAGGAAG
CTAGGAAGAGACAGGCTGCCCAGGCTGCTGCTTAAGCTTTTACAATGAAT
TTGGATACATTTTGCTGCTTTGTTTTTTCTTGTTGAATTAGAGCTGATTG
GCACTCTCTAAAGCTGAAGTAGGACGGATGCAAAAATGAATCTTTATTTT
TATTTTATCAGCACAATTTTGAACCTGCTTTGTCCTTTTTTATTTTAGCT
ACTATTTTGGTGGATGTTATTTTCAACTATTTAATCTAAGTTCATGTATC
TCTTTATCGTTTCTGTTT
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