CF417335

Overview
NameCF417335
Unique NameCF417335
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3442 contig Csv1_Contig3442:510..1083. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417335 vs. ExPASy Swiss-Prot
Match: RS4A_SCHPO (40S ribosomal protein S4-A OS=Schizosaccharomyces pombe GN=rps4a PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 1.776e-33
Identity = 71/103 (68.93%), Postives = 79/103 (76.70%), Query Frame = 3 
Query:    3 LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 311
            LIK NDTIKL+LE NKI  FIKFD    VMVTGGRN GRVG I +RE H GSFE IH++DAL  EFATRL NVF IG+  K W+SLPKGKG+KLSI EE  +R
Sbjct:  153 LIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRR 255
[Close]
BLAST of CF417335 vs. ExPASy Swiss-Prot
Match: RS4_IXOSC (40S ribosomal protein S4 OS=Ixodes scapularis GN=RpS4 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.319e-33
Identity = 63/103 (61.17%), Postives = 82/103 (79.61%), Query Frame = 3 
Query:    3 LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 311
            LIK NDT+K+DL   KI D+IKFD GN+ MVTGG N GRVG+I +RE+H GSF+ +H++D+ GH FATRL  +F IGK +KP++SLP+GKGIKLS+ EE  +R
Sbjct:  153 LIKVNDTVKVDLATGKIDDYIKFDSGNVCMVTGGHNLGRVGVITSRERHPGSFDIVHVKDSQGHSFATRLNYIFVIGKSTKPYISLPRGKGIKLSVAEERDRR 255
[Close]
BLAST of CF417335 vs. ExPASy Swiss-Prot
Match: RS4Y2_PANTR (40S ribosomal protein S4, Y isoform 2 OS=Pan troglodytes GN=RPS4Y2 PE=2 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 2.319e-33
Identity = 62/103 (60.19%), Postives = 81/103 (78.64%), Query Frame = 3 
Query:    3 LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 311
            LIK NDT+++DL   KIT FIKFD GN+ MV GG N GRVG++ NRE+H GS + +H++DA G+ FATR+ N+F IG G+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  153 LIKVNDTVQIDLGTGKITSFIKFDTGNVCMVIGGANLGRVGVVTNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of CF417335 vs. ExPASy Swiss-Prot
Match: RS4_CARGR (40S ribosomal protein S4 OS=Carabus granulatus GN=RpS4 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.029e-33
Identity = 66/103 (64.08%), Postives = 82/103 (79.61%), Query Frame = 3 
Query:    3 LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 311
            +IK NDTI+L++  +KI D IKFD GN+ M+TGGRN GRVG + NRE+H GSF+ +HI+D+ GH FA RL NVF IGKGSK +VSLP+GKG+KLSI EE  KR
Sbjct:  153 IIKVNDTIQLEIANSKIMDSIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHTFANRLNNVFIIGKGSKAYVSLPRGKGVKLSIAEERDKR 255
[Close]
BLAST of CF417335 vs. ExPASy Swiss-Prot
Match: RS4Y1_GORGO (40S ribosomal protein S4, Y isoform 1 OS=Gorilla gorilla gorilla GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 3.029e-33
Identity = 61/103 (59.22%), Postives = 82/103 (79.61%), Query Frame = 3 
Query:    3 LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 311
            +IK NDT+++DL   KI +FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATR+ N+F IG G+KPW+SLP+GKGI+L++ EE  KR
Sbjct:  153 VIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTVAEERDKR 255
[Close]
BLAST of CF417335 vs. ExPASy Swiss-Prot
Match: RS4_LYSTE (40S ribosomal protein S4 OS=Lysiphlebus testaceipes GN=RpS4 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.748e-33
Identity = 66/103 (64.08%), Postives = 82/103 (79.61%), Query Frame = 3 
Query:    3 LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 311
            +IK NDTI+L++  NKI D IKFD GN+ M+TGGRN GRVG + +RE+H GSF+  HI+D+ GH FATR+ NVF IGKGSK +VSLP+GKG+KLSI EE  KR
Sbjct:  153 VIKVNDTIQLEIATNKILDSIKFDSGNLCMITGGRNLGRVGTVVSRERHPGSFDICHIKDSQGHTFATRMNNVFIIGKGSKAYVSLPRGKGVKLSIAEERDKR 255
[Close]
BLAST of CF417335 vs. ExPASy Swiss-Prot
Match: RS4_BOMMO (40S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.748e-33
Identity = 65/103 (63.11%), Postives = 83/103 (80.58%), Query Frame = 3 
Query:    3 LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 311
            LIK ND+I+LD+   KI DFIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+D+ GH FATRL NVF IGKG+K ++SLP+GKGI+L+I EE  KR
Sbjct:  153 LIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of CF417335 vs. ExPASy Swiss-Prot
Match: RS4_SPOFR (40S ribosomal protein S4 OS=Spodoptera frugiperda GN=RpS4 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 8.814e-33
Identity = 63/103 (61.17%), Postives = 84/103 (81.55%), Query Frame = 3 
Query:    3 LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 311
            LIK ND+++LD+  +KI DFIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+D+ GH FATRL NVF IGKG+K ++SLP+GKG++L+I EE  KR
Sbjct:  153 LIKVNDSVQLDIATSKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGVRLTIAEERDKR 255
[Close]
BLAST of CF417335 vs. ExPASy Swiss-Prot
Match: RS4Y2_HUMAN (40S ribosomal protein S4, Y isoform 2 OS=Homo sapiens GN=RPS4Y2 PE=1 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 8.814e-33
Identity = 62/103 (60.19%), Postives = 80/103 (77.67%), Query Frame = 3 
Query:    3 LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 311
            LIK NDT+++DL   KIT FIKFD GN+ MV  G N GRVG+I NRE+H GS + +H++DA G+ FATR+ N+F IG G+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  153 LIKVNDTVQIDLGTGKITSFIKFDTGNVCMVIAGANLGRVGVITNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of CF417335 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANTR (40S ribosomal protein S4, Y isoform 1 OS=Pan troglodytes GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 8.814e-33
Identity = 61/103 (59.22%), Postives = 81/103 (78.64%), Query Frame = 3 
Query:    3 LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 311
            +IK NDT+++DL   KI +FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATRL N+F IG G+KPW+SLP+GKGI+L++  E  KR
Sbjct:  153 VIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAAERDKR 255
The following BLAST results are available for this feature:
BLAST of CF417335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
RS4A_SCHPO1.776e-3368.9340S ribosomal protein S4-A OS=Schizosaccharomyces ... [more]
RS4_IXOSC2.319e-3361.1740S ribosomal protein S4 OS=Ixodes scapularis GN=R... [more]
RS4Y2_PANTR2.319e-3360.1940S ribosomal protein S4, Y isoform 2 OS=Pan trogl... [more]
RS4_CARGR3.029e-3364.0840S ribosomal protein S4 OS=Carabus granulatus GN=... [more]
RS4Y1_GORGO3.029e-3359.2240S ribosomal protein S4, Y isoform 1 OS=Gorilla g... [more]
RS4_LYSTE6.748e-3364.0840S ribosomal protein S4 OS=Lysiphlebus testaceipe... [more]
RS4_BOMMO6.748e-3363.1140S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE... [more]
RS4_SPOFR8.814e-3361.1740S ribosomal protein S4 OS=Spodoptera frugiperda ... [more]
RS4Y2_HUMAN8.814e-3360.1940S ribosomal protein S4, Y isoform 2 OS=Homo sapi... [more]
RS4Y1_PANTR8.814e-3359.2240S ribosomal protein S4, Y isoform 1 OS=Pan trogl... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-265 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417335 ID=CF417335; Name=CF417335; organism=Citrus sinensis; type=EST; length=568bp
CACTCATCAAAGCCAATGATACCATCAAACTTGACTTAGAAGAGAACAAG
ATCACTGACTTCATCAAGTTTGATGTTGGGAATATTGTCATGGTCACTGG
GGGTAGAAACAGAGGTCGGGTTGGAATCATCAAGAACAGGGAAAAGCATA
AGGGAAGTTTTGAGACCATCCATATTCAAGATGCCCTTGGTCATGAGTTT
GCAACTCGTCTAGGCAATGTGTTCACCATCGGGAAGGGTTCAAAACCATG
GGTGTCACTTCCTAAGGGCAAGGGTATTAAGTTGTCCATCATTGAGGAAG
CTAGGAAGAGACAGGCTGCCCAGGCTGCTGCTTAAGCTTTTACAATGAAT
TTGGATACATTTTGCTGCTTTGTTTTTTCTTGTTGAATTAGAGCTGATTG
GCACTCTCTAAAGCTGAAGTAGGACGGATGCAAAAATGAATCTTTATTTT
TATTTTATCAGCACAATTTTGAACCTGCTTTGTCCTTTTTTATTTTAGCT
ACTATTTTGGTGGATGTTATTTTCAACTATTTAATCTAAGTTCATGTATC
TCTTTATCGTTTCTGTTT
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