CF417340

Overview
NameCF417340
Unique NameCF417340
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: DPYL2_RAT (Dihydropyrimidinase-related protein 2 OS=Rattus norvegicus GN=Dpysl2 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.382e-20
Identity = 45/95 (47.37%), Postives = 70/95 (73.68%), Query Frame = 2
Query:   14 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF 298
            +V +TST  A++FN+YPRKG I VGSDAD++I++P+S   I+A++H+S L+ N++EG   +G   V I+ G++V E+  L+V  GSG+YI  +PF
Sbjct:  380 FVAVTSTNAAKVFNLYPRKGRISVGSDADLVIWDPDSVKTISAKTHNSALEYNIFEGMECRGSPLVVISQGKIVLEDGTLHVTEGSGRYIPRKPF 474          
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: DPYL2_MOUSE (Dihydropyrimidinase-related protein 2 OS=Mus musculus GN=Dpysl2 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.382e-20
Identity = 45/95 (47.37%), Postives = 70/95 (73.68%), Query Frame = 2
Query:   14 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF 298
            +V +TST  A++FN+YPRKG I VGSDAD++I++P+S   I+A++H+S L+ N++EG   +G   V I+ G++V E+  L+V  GSG+YI  +PF
Sbjct:  380 FVAVTSTNAAKVFNLYPRKGRISVGSDADLVIWDPDSVKTISAKTHNSALEYNIFEGMECRGSPLVVISQGKIVLEDGTLHVTEGSGRYIPRKPF 474          
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: DPYL2_CHICK (Dihydropyrimidinase-related protein 2 OS=Gallus gallus GN=DPYSL2 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.079e-20
Identity = 45/95 (47.37%), Postives = 69/95 (72.63%), Query Frame = 2
Query:   14 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF 298
            +V +TST  A+IFN+YPRKG I VGSDAD++I++P+S   I+A++H+  L+ N++EG   +G   V I+ G++V E+  L+V  GSG+YI  +PF
Sbjct:  380 FVAVTSTNAAKIFNLYPRKGRIAVGSDADLVIWDPDSVKTISAKTHNISLEYNIFEGMECRGSPLVVISQGKIVLEDGNLHVTEGSGRYIPRKPF 474          
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: DPYS_HUMAN (Dihydropyrimidinase OS=Homo sapiens GN=DPYS PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.860e-20
Identity = 47/107 (43.93%), Postives = 72/107 (67.29%), Query Frame = 2
Query:   14 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF-NYLFHGLDKAD 331
            +V +TST  A+IFN+YPRKG I VGSDADI+I++P  +  I+A++HH  ++ N++EG    G   VTI+ G+VV+E    +V  G GK+I  +PF  Y++  + + D
Sbjct:  374 FVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWDPKGTRTISAKTHHQAVNFNIFEGMVCHGVPLVTISRGKVVYEAGVFSVTAGDGKFIPRKPFAEYIYKRIKQRD 480          
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: DPYL4_RAT (Dihydropyrimidinase-related protein 4 (Fragment) OS=Rattus norvegicus GN=Dpysl4 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.170e-19
Identity = 44/96 (45.83%), Postives = 68/96 (70.83%), Query Frame = 2
Query:   11 DYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF 298
            ++V +TST  A+IFN YPRKG + VGSDAD++I+NP ++  I+A+SH+  ++ N++EG   +G   V I+ GRVV E+  L V PG+G++I  + F
Sbjct:  371 EFVAVTSTNAAKIFNFYPRKGRVAVGSDADLVIWNPRATKVISAKSHNLNVEYNIFEGVECRGMPTVVISQGRVVLEDGNLLVTPGAGRFIPRKTF 466          
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: DPYS_RAT (Dihydropyrimidinase OS=Rattus norvegicus GN=Dpys PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.528e-19
Identity = 50/120 (41.67%), Postives = 78/120 (65.00%), Query Frame = 2
Query:   14 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF-NYLFHGLDKADAKYLSSLQAPVKR 370
            +V +TST  A+IFN+YP+KG I VGSDADI+I++P ++  I+A++HH  ++ N++EG    G   VTI+ GRVV+E    +V  G GK+I  +PF  +++  + + D    +    PVKR
Sbjct:  374 FVAVTSTNAAKIFNLYPKKGRIAVGSDADIVIWDPEATRTISAKTHHQAVNFNIFEGMVCHGVPLVTISRGRVVYEAGVFDVTAGHGKFIPRQPFAEFIYKRVKQRDQ---TCTPIPVKR 490          
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: DPYL1_MOUSE (Dihydropyrimidinase-related protein 1 OS=Mus musculus GN=Crmp1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.996e-19
Identity = 43/95 (45.26%), Postives = 67/95 (70.53%), Query Frame = 2
Query:   14 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF 298
            +V +TST  A+IFN+YPRKG I VGSDAD++I++P+    ITA+SH S ++ N++EG    G   V I+ G++V+E+  ++V  G G++I  +PF
Sbjct:  380 FVAVTSTNAAKIFNLYPRKGRIAVGSDADVVIWDPDKMKTITAKSHKSTVEYNIFEGMECHGSPLVVISQGKIVFEDGNISVSKGMGRFIPRKPF 474          
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: DPYL1_RAT (Dihydropyrimidinase-related protein 1 OS=Rattus norvegicus GN=Crmp1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.404e-19
Identity = 42/95 (44.21%), Postives = 67/95 (70.53%), Query Frame = 2
Query:   14 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF 298
            +V +TST  A+IFN+YPRKG I VGSDAD++I++P+    +TA+SH S ++ N++EG    G   V I+ G++V+E+  ++V  G G++I  +PF
Sbjct:  380 FVAVTSTNAAKIFNLYPRKGRIAVGSDADVVIWDPDKMKTLTAKSHKSTVEYNIFEGMECHGSPLVVISQGKIVFEDGNISVSKGMGRFIPRKPF 474          
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: DPYL4_MOUSE (Dihydropyrimidinase-related protein 4 OS=Mus musculus GN=Dpysl4 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.446e-19
Identity = 43/96 (44.79%), Postives = 67/96 (69.79%), Query Frame = 2
Query:   11 DYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF 298
            ++V +TST  A+IFN YPRKG + VGSDAD++I+NP ++   +A+SH+  ++ N++EG   +G   V I+ GRVV E+  L V PG+G++I  + F
Sbjct:  379 EFVAVTSTNAAKIFNFYPRKGRVAVGSDADLVIWNPRATKVFSAKSHNLNVEYNIFEGVECRGVPTVVISQGRVVLEDGNLLVTPGAGRFIPRKTF 474          
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: DPY3A_XENLA (Dihydropyrimidinase-related protein 3-A OS=Xenopus laevis GN=dpysl3-A PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.446e-19
Identity = 41/95 (43.16%), Postives = 68/95 (71.58%), Query Frame = 2
Query:   14 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF 298
            +V +TST  A+IFN+YPRKG I VGSD+D++I++P++   ++A+SHHS  + N++EG  ++G   V I  G+++ E+  L+V  G+G++I   PF
Sbjct:  380 FVSVTSTNAAKIFNLYPRKGRIAVGSDSDLVIWDPDAVKIVSAKSHHSAAEYNIFEGMELRGAPLVVICQGKIMMEDGTLHVTQGTGRFIHCSPF 474          
The following BLAST results are available for this feature:
BLAST of CF417340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
DPYL2_RAT1.382e-2047.37Dihydropyrimidinase-related protein 2 OS=Rattus no... [more]
DPYL2_MOUSE1.382e-2047.37Dihydropyrimidinase-related protein 2 OS=Mus muscu... [more]
DPYL2_CHICK3.079e-2047.37Dihydropyrimidinase-related protein 2 OS=Gallus ga... [more]
DPYS_HUMAN6.860e-2043.93Dihydropyrimidinase OS=Homo sapiens GN=DPYS PE=1 S... [more]
DPYL4_RAT1.170e-1945.83Dihydropyrimidinase-related protein 4 (Fragment) O... [more]
DPYS_RAT1.528e-1941.67Dihydropyrimidinase OS=Rattus norvegicus GN=Dpys P... [more]
DPYL1_MOUSE1.996e-1945.26Dihydropyrimidinase-related protein 1 OS=Mus muscu... [more]
DPYL1_RAT3.404e-1944.21Dihydropyrimidinase-related protein 1 OS=Rattus no... [more]
DPYL4_MOUSE4.446e-1944.79Dihydropyrimidinase-related protein 4 OS=Mus muscu... [more]
DPY3A_XENLA4.446e-1943.16Dihydropyrimidinase-related protein 3-A OS=Xenopus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-270 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417340 ID=CF417340; Name=CF417340; organism=Citrus sinensis; type=EST; length=664bp
TTCTGTGACTGATTATGTCAGGTTAACTAGCACTGAATGTGCTAGAATAT
TCAACGTATATCCCAGGAAAGGAGCAATTCTTGTTGGATCTGATGCAGAT
ATAATTATATTCAACCCAAATTCAAGCTTTGAAATTACTGCAAGGTCCCA
CCACTCTAGATTAGATACAAATGTCTATGAGGGCAGGAGAGTAAAAGGGA
AGGTTGAAGTGACGATTGCTGGTGGCAGGGTTGTTTGGGAAAATGATGAA
CTGAATGTCGTTCCAGGTTCTGGAAAGTACATAGAAATGCGTCCCTTTAA
TTATCTTTTTCATGGACTTGACAAAGCTGATGCTAAGTATTTATCTTCCC
TCCAAGCTCCAGTGAAGCGTCTTAAGTCCTCGACCTAGATTGCAGGTATT
AGCTTCTTTTTTTTTTCAGTTGTTGGAACTAAATTAGAAGGAAAATCATG
CCCAATGTTCAGATTTGTGTTGAGCTGTGAACTATGACAAATAAATTCAG
CTGTTTATCCGCCTGGACAAAAGAAACAAACACTGCATCCAATTTGTAAA
ATATGTATACCTGTTAATAAATTTTTTTTACAGAAGTTGTAATTAGATTA
TTCTGTTTTCTTTGTCTCGTCTGGGGACAATAGATGCAATAAAAATTTGA
ACAATTCTTAAAAA
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