CF417340

Overview
NameCF417340
Unique NameCF417340
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: DPYL3_XENTR (Dihydropyrimidinase-related protein 3 OS=Xenopus tropicalis GN=dpysl3 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.807e-19
Identity = 41/95 (43.16%), Postives = 68/95 (71.58%), Query Frame = 2
Query:   14 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF 298
            +V +TST  A+IFN+YPRKG I VGSD+D++I++P++   ++A+SHHS  + N++EG  ++G   V I  G+++ E+  L+V  G+G++I   PF
Sbjct:  380 FVAVTSTNAAKIFNLYPRKGRIAVGSDSDLVIWDPDAVKIVSAKSHHSAAEYNIFEGMELRGAPLVVICQGKIMMEDGTLHVTQGTGRFIPCSPF 474          
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: DPYL1_HUMAN (Dihydropyrimidinase-related protein 1 OS=Homo sapiens GN=CRMP1 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.584e-19
Identity = 43/95 (45.26%), Postives = 66/95 (69.47%), Query Frame = 2
Query:   14 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF 298
            +V +TST  A+IFN+YPRKG I VGSDAD++I++P+    ITA+SH S ++ N++EG    G   V I+ G++V+E+  +NV  G G++I  + F
Sbjct:  380 FVAVTSTNAAKIFNLYPRKGRIAVGSDADVVIWDPDKLKTITAKSHKSAVEYNIFEGMECHGSPLVVISQGKIVFEDGNINVNKGMGRFIPRKAF 474          
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: DPYL4_HUMAN (Dihydropyrimidinase-related protein 4 OS=Homo sapiens GN=DPYSL4 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.690e-18
Identity = 40/96 (41.67%), Postives = 68/96 (70.83%), Query Frame = 2
Query:   11 DYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF 298
            ++V +TST  A+IFN YPRKG + VGSDAD++I+NP ++  I+A++H+  ++ N++EG   +G   V I+ GRV  E+ ++ V PG+G+++  + F
Sbjct:  379 EFVAVTSTNAAKIFNFYPRKGRVAVGSDADLVIWNPKATKIISAKTHNLNVEYNIFEGVECRGAPAVVISQGRVALEDGKMFVTPGAGRFVPRKTF 474          
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: DPY3B_XENLA (Dihydropyrimidinase-related protein 3-B OS=Xenopus laevis GN=dpysl3-B PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.690e-18
Identity = 40/95 (42.11%), Postives = 67/95 (70.53%), Query Frame = 2
Query:   14 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF 298
            +V +TST  A+IFN+YPRKG I VGSD+D++I++P++   ++A+SHHS  + N++EG  ++G   V I  G+++ E+  L+   G+G++I   PF
Sbjct:  380 FVAVTSTNAAKIFNLYPRKGRIAVGSDSDLVIWDPDAVKIVSAKSHHSAAEYNIFEGMELRGAPLVVICQGKIMMEDGTLHATQGTGRFIPCSPF 474          
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: HYDA_PSEPU (D-hydantoinase/dihydropyrimidinase OS=Pseudomonas putida GN=dht PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.882e-18
Identity = 39/84 (46.43%), Postives = 65/84 (77.38%), Query Frame = 2
Query:    2 SVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDEL 253
            S+ ++V LTST  A+IFN++PRKGAI VG+DAD+++++P  +  ++A++HH R+D N++EGR V+G    TI+ G+V+W + +L
Sbjct:  360 SMHEFVALTSTNTAKIFNLFPRKGAIRVGADADLVLWDPQGTRTLSAQTHHQRVDFNIFEGRTVRGVPSHTISQGKVLWADGDL 443          
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: DPYL3_HUMAN (Dihydropyrimidinase-related protein 3 OS=Homo sapiens GN=DPYSL3 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.385e-18
Identity = 42/108 (38.89%), Postives = 72/108 (66.67%), Query Frame = 2
Query:   14 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLFHGLDKADAK 337
            +V +TST  A+IFN+YPRKG I VGSD+D++I++P++   ++A++H S  + N++EG  ++G   V I  G+++ E+  L+V  G+G++I   PF+   +   KA  K
Sbjct:  380 FVAVTSTNAAKIFNLYPRKGRISVGSDSDLVIWDPDAVKIVSAKNHQSAAEYNIFEGMELRGAPLVVICQGKIMLEDGNLHVTQGAGRFIPCSPFSDYVYKRIKARRK 487          
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: DPYL3_RAT (Dihydropyrimidinase-related protein 3 OS=Rattus norvegicus GN=Dpysl3 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.095e-17
Identity = 42/108 (38.89%), Postives = 72/108 (66.67%), Query Frame = 2
Query:   14 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLFHGLDKADAK 337
            +V +TST  A+IFN+YPRKG I VGSD+D++I++P++   ++A++H S  + N++EG  ++G   V I  G+++ E+  L+V  G+G++I   PF+   +   KA  K
Sbjct:  380 FVAVTSTNAAKIFNLYPRKGRIAVGSDSDLVIWDPDAVKIVSAKNHQSVAEYNIFEGMELRGAPLVVICQGKIMLEDGNLHVTQGAGRFIPCSPFSDYVYKRIKARRK 487          
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: DPYL3_MOUSE (Dihydropyrimidinase-related protein 3 OS=Mus musculus GN=Dpysl3 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.095e-17
Identity = 42/108 (38.89%), Postives = 72/108 (66.67%), Query Frame = 2
Query:   14 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLFHGLDKADAK 337
            +V +TST  A+IFN+YPRKG I VGSD+D++I++P++   ++A++H S  + N++EG  ++G   V I  G+++ E+  L+V  G+G++I   PF+   +   KA  K
Sbjct:  380 FVAVTSTNAAKIFNLYPRKGRIAVGSDSDLVIWDPDALKIVSAKNHQSVAEYNIFEGMELRGAPLVVICQGKIMLEDGNLHVTQGAGRFIPCSPFSDYVYKRIKARRK 487          
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: DPYL3_DANRE (Dihydropyrimidinase-related protein 3 OS=Danio rerio GN=dpysl3 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.868e-17
Identity = 39/95 (41.05%), Postives = 65/95 (68.42%), Query Frame = 2
Query:   14 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF 298
            +V +TST  A+I N+YPRKG I VGSD+D++I++ ++   ITA++HHS  + NV+EG  ++G   + +  G++V E+  L+   G+G++I   PF
Sbjct:  380 FVAVTSTNAAKILNLYPRKGRIAVGSDSDLVIWDTDAVRTITAKTHHSAAEYNVFEGMELRGAPMLVVCQGKIVLEDGNLHATSGTGRFIPCSPF 474          
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: DPYL5_RAT (Dihydropyrimidinase-related protein 5 OS=Rattus norvegicus GN=Dpysl5 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.644e-15
Identity = 39/95 (41.05%), Postives = 61/95 (64.21%), Query Frame = 2
Query:   14 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF 298
            +V +TS+  A+I N+YPRKG I+ G+DAD+++++P ++  I+A +     D N+YE  R  G   VTI+ GRVV+EN       G+GK+  +R F
Sbjct:  373 FVAVTSSNAAKILNLYPRKGRIIPGADADVVVWDPEATKTISASTQVQGGDFNLYENMRCHGVPLVTISRGRVVYENGVFMCAEGTGKFCPLRSF 467          
The following BLAST results are available for this feature:
BLAST of CF417340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
DPYL3_XENTR5.807e-1943.16Dihydropyrimidinase-related protein 3 OS=Xenopus t... [more]
DPYL1_HUMAN7.584e-1945.26Dihydropyrimidinase-related protein 1 OS=Homo sapi... [more]
DPYL4_HUMAN1.690e-1841.67Dihydropyrimidinase-related protein 4 OS=Homo sapi... [more]
DPY3B_XENLA1.690e-1842.11Dihydropyrimidinase-related protein 3-B OS=Xenopus... [more]
HYDA_PSEPU2.882e-1846.43D-hydantoinase/dihydropyrimidinase OS=Pseudomonas ... [more]
DPYL3_HUMAN8.385e-1838.89Dihydropyrimidinase-related protein 3 OS=Homo sapi... [more]
DPYL3_RAT1.095e-1738.89Dihydropyrimidinase-related protein 3 OS=Rattus no... [more]
DPYL3_MOUSE1.095e-1738.89Dihydropyrimidinase-related protein 3 OS=Mus muscu... [more]
DPYL3_DANRE1.868e-1741.05Dihydropyrimidinase-related protein 3 OS=Danio rer... [more]
DPYL5_RAT6.644e-1541.05Dihydropyrimidinase-related protein 5 OS=Rattus no... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-270 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417340 ID=CF417340; Name=CF417340; organism=Citrus sinensis; type=EST; length=664bp
TTCTGTGACTGATTATGTCAGGTTAACTAGCACTGAATGTGCTAGAATAT
TCAACGTATATCCCAGGAAAGGAGCAATTCTTGTTGGATCTGATGCAGAT
ATAATTATATTCAACCCAAATTCAAGCTTTGAAATTACTGCAAGGTCCCA
CCACTCTAGATTAGATACAAATGTCTATGAGGGCAGGAGAGTAAAAGGGA
AGGTTGAAGTGACGATTGCTGGTGGCAGGGTTGTTTGGGAAAATGATGAA
CTGAATGTCGTTCCAGGTTCTGGAAAGTACATAGAAATGCGTCCCTTTAA
TTATCTTTTTCATGGACTTGACAAAGCTGATGCTAAGTATTTATCTTCCC
TCCAAGCTCCAGTGAAGCGTCTTAAGTCCTCGACCTAGATTGCAGGTATT
AGCTTCTTTTTTTTTTCAGTTGTTGGAACTAAATTAGAAGGAAAATCATG
CCCAATGTTCAGATTTGTGTTGAGCTGTGAACTATGACAAATAAATTCAG
CTGTTTATCCGCCTGGACAAAAGAAACAAACACTGCATCCAATTTGTAAA
ATATGTATACCTGTTAATAAATTTTTTTTACAGAAGTTGTAATTAGATTA
TTCTGTTTTCTTTGTCTCGTCTGGGGACAATAGATGCAATAAAAATTTGA
ACAATTCTTAAAAA
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