CF417340

Overview
NameCF417340
Unique NameCF417340
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: DPYL5_MOUSE (Dihydropyrimidinase-related protein 5 OS=Mus musculus GN=Dpysl5 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.644e-15
Identity = 39/95 (41.05%), Postives = 61/95 (64.21%), Query Frame = 2
Query:   14 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF 298
            +V +TS+  A+I N+YPRKG I+ G+DAD+++++P ++  I+A +     D N+YE  R  G   VTI+ GRVV+EN       G+GK+  +R F
Sbjct:  373 FVAVTSSNAAKILNLYPRKGRIIPGADADVVVWDPEATKTISASTQVQGGDFNLYENMRCHGVPLVTISRGRVVYENGVFMCAEGTGKFCPLRSF 467          
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: DPYL5_HUMAN (Dihydropyrimidinase-related protein 5 OS=Homo sapiens GN=DPYSL5 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.133e-14
Identity = 38/95 (40.00%), Postives = 61/95 (64.21%), Query Frame = 2
Query:   14 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF 298
            +V +TS+  A++ N+YPRKG I+ G+DAD+++++P ++  I+A +     D N+YE  R  G   VTI+ GRVV+EN       G+GK+  +R F
Sbjct:  373 FVAVTSSNAAKLLNLYPRKGRIIPGADADVVVWDPEATKTISASTQVQGGDFNLYENMRCHGVPLVTISRGRVVYENGVFMCAEGTGKFCPLRSF 467          
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: UNC33_CAEEL (Protein unc-33 OS=Caenorhabditis elegans GN=unc-33 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.594e-14
Identity = 36/107 (33.64%), Postives = 66/107 (61.68%), Query Frame = 2
Query:   14 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFN-YLFHGLDKAD 331
            +V +TST  A++FN+YP+KG I VG+DAD++I++ +    + +    S  + ++Y+G  V   V  TI GG++ ++N E+   P +G ++ + P + YLF  + + D
Sbjct:  683 FVAVTSTNAAKMFNMYPKKGRIAVGADADLVIWDASGKRVLESSRAQSSQENSMYDGLTVHSVVTATIVGGKIAYQNGEVREAPVAGGFLRLSPNSPYLFSMVGQRD 789          
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: HYDA_BURPI (D-hydantoinase OS=Burkholderia pickettii GN=hyuA PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.594e-14
Identity = 34/99 (34.34%), Postives = 61/99 (61.62%), Query Frame = 2
Query:    2 SVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF 298
            S+T +V L +T  A++F ++P+KG I VGSDADI++++P +   I   + H+ +D + YEG +VKG  +  +  G+V+ +       P  GK+++ R +
Sbjct:  357 SLTQFVELVATRPAKVFGMFPQKGTIAVGSDADIVLWDPEAEMVIEQTAMHNAMDYSSYEGHKVKGVPKTVLLRGKVIVDEGSYVGEPTDGKFLKRRKY 455          
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: HYDA_STRCO (D-hydantoinase OS=Streptomyces coelicolor GN=hyuA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.253e-13
Identity = 35/98 (35.71%), Postives = 56/98 (57.14%), Query Frame = 2
Query:   14 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYL 307
            ++ +     AR+F +YP+KG I  G+DADI++++P++   I+A +HH  +D + YEGRR+ G+VE  ++ G  V    E     G G Y       YL
Sbjct:  369 WIEIACATPARMFGLYPKKGTIAPGADADIVVYDPHAEQVISAETHHMNVDYSAYEGRRITGRVETVLSRGEPVVTEREYTGRKGHGAYTPRATCQYL 466          
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: HYDA_BACST (D-hydantoinase OS=Bacillus stearothermophilus PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.137e-13
Identity = 35/107 (32.71%), Postives = 61/107 (57.01%), Query Frame = 2
Query:    2 SVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLFHGLD 322
            ++  +V + ST  A++F ++P+KG I VG+DAD++IF+P     I+A +HH  +D N +EG +V G+    +  G  V  + +    PG G+Y++   +  L    D
Sbjct:  360 TLNQFVDIVSTRIAKLFGLFPKKGTIAVGADADLVIFDPTVERVISAETHHMAVDYNPFEGMKVTGEPVSVLCRGEFVVRDKQFVGKPGYGQYVKRAKYGALMADQD 466          
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: HYDA_RHIRD (D-hydantoinase OS=Rhizobium radiobacter GN=hyuA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.809e-12
Identity = 31/99 (31.31%), Postives = 59/99 (59.60%), Query Frame = 2
Query:    2 SVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF 298
            S+T +V L +T  A++F ++P KG + VGSDADI++++P +   I   + H+ +D + YEG ++KG  +  +  G+V+ +       P  G++ + R +
Sbjct:  357 SLTQFVELVATRPAKVFGMFPEKGTVAVGSDADIVLWDPEAEMVIEQSAMHNAMDYSSYEGHKIKGVPKTVLLRGKVIVDEGTYVGAPTDGQFRKRRKY 455          
The following BLAST results are available for this feature:
BLAST of CF417340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
DPYL5_MOUSE6.644e-1541.05Dihydropyrimidinase-related protein 5 OS=Mus muscu... [more]
DPYL5_HUMAN1.133e-1440.00Dihydropyrimidinase-related protein 5 OS=Homo sapi... [more]
UNC33_CAEEL9.594e-1433.64Protein unc-33 OS=Caenorhabditis elegans GN=unc-33... [more]
HYDA_BURPI9.594e-1434.34D-hydantoinase OS=Burkholderia pickettii GN=hyuA P... [more]
HYDA_STRCO1.253e-1335.71D-hydantoinase OS=Streptomyces coelicolor GN=hyuA ... [more]
HYDA_BACST2.137e-1332.71D-hydantoinase OS=Bacillus stearothermophilus PE=1... [more]
HYDA_RHIRD1.809e-1231.31D-hydantoinase OS=Rhizobium radiobacter GN=hyuA PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-270 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417340 ID=CF417340; Name=CF417340; organism=Citrus sinensis; type=EST; length=664bp
TTCTGTGACTGATTATGTCAGGTTAACTAGCACTGAATGTGCTAGAATAT
TCAACGTATATCCCAGGAAAGGAGCAATTCTTGTTGGATCTGATGCAGAT
ATAATTATATTCAACCCAAATTCAAGCTTTGAAATTACTGCAAGGTCCCA
CCACTCTAGATTAGATACAAATGTCTATGAGGGCAGGAGAGTAAAAGGGA
AGGTTGAAGTGACGATTGCTGGTGGCAGGGTTGTTTGGGAAAATGATGAA
CTGAATGTCGTTCCAGGTTCTGGAAAGTACATAGAAATGCGTCCCTTTAA
TTATCTTTTTCATGGACTTGACAAAGCTGATGCTAAGTATTTATCTTCCC
TCCAAGCTCCAGTGAAGCGTCTTAAGTCCTCGACCTAGATTGCAGGTATT
AGCTTCTTTTTTTTTTCAGTTGTTGGAACTAAATTAGAAGGAAAATCATG
CCCAATGTTCAGATTTGTGTTGAGCTGTGAACTATGACAAATAAATTCAG
CTGTTTATCCGCCTGGACAAAAGAAACAAACACTGCATCCAATTTGTAAA
ATATGTATACCTGTTAATAAATTTTTTTTACAGAAGTTGTAATTAGATTA
TTCTGTTTTCTTTGTCTCGTCTGGGGACAATAGATGCAATAAAAATTTGA
ACAATTCTTAAAAA
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