CF417341
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_CAEEL (60S ribosomal protein L4 OS=Caenorhabditis elegans GN=rpl-4 PE=1 SV=3) HSP 1 Score: 222.631 bits (566), Expect = 1.492e-57 Identity = 115/226 (50.88%), Postives = 150/226 (66.37%), Query Frame = 1 Query: 4 AARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681 AARPLVTV + + S + LP V + IRPD+V F+ + +N RQ +AV+ KAG Q SAESWGTGRAV+RIPRV GGGTHR+GQGAFG RGG MFAP K++RRWHR +N+ QKRY P+L+ ARGH I+ V E+PLVVSD E KT A+ L++ +AD EK +S+ R GKGK+RNR++ + GP+ +Y + A+ +AFRNI Sbjct: 2 AARPLVTVYDEKYEAT---QSQIRLPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVIY-GQDAECARAFRNI 223
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_ENTHI (60S ribosomal protein L4 (Fragments) OS=Entamoeba histolytica GN=RPL4 PE=2 SV=2) HSP 1 Score: 154.836 bits (390), Expect = 3.822e-37 Identity = 85/177 (48.02%), Postives = 107/177 (60.45%), Query Frame = 1 Query: 175 KAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLV--------VSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681 KAG Q SA SWGTGRAV+RIPR+ G G+ R GQGAFG R G MF+P K +R+W RK +R+ P+LV ARGH I VP++P V S S ++KT A+ +LK+I AY+D K S+ IR G+GKMR R+ RKGPL VY + + VKAFRNI Sbjct: 3 KAGKQHSAISWGTGRAVARIPRISGSGSGRNGQGAFGNMTRKGHMFSPLKNFRKWQRKTPKQMRRFAVASCIAASAVPALVSARGHHIAGVPQLPSVSFLQPQFHSSKSISVIKKTKQAVYLLKKINAYSDVLKVIASKTIRAGQGKMRGRKIKERKGPLVVYGNDDLQAVKAFRNI 179
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_METTH (50S ribosomal protein L4P OS=Methanobacterium thermoautotrophicum GN=rpl4p PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29 Identity = 70/206 (33.98%), Postives = 110/206 (53.40%), Query Frame = 1 Query: 19 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXV 636 + V SLEG+ A + LP++ RPD++ + QP+ AG +TSA+S+G GR V+ +PR+ G + AF GGR P + + +H +IN ++R LV ARGH+IE VP++PLVV D +++T+ +V +++G D +A++ + IR GKGKMR R+Y + +GPL V Sbjct: 3 IKVYSLEGE----AIDEMELPEIFNEEFRPDVIKRAVLSAQTARVQPWGPDPMAGKRTSAQSYGAGRGVAMVPRIKNGS-----RAAFVPQAVGGRRAHPPRPQKNYHERINRKERRLAIRSAVAATARKDLVEARGHRIENVPQLPLVVDDELSMIKRTADTREVFRKLGIMDDIVRAREGKKIRAGKGKMRGRKYRTPRGPLIV 199
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_METKA (50S ribosomal protein L4P OS=Methanopyrus kandleri GN=rpl4p PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.456e-28 Identity = 77/214 (35.98%), Postives = 108/214 (50.47%), Query Frame = 1 Query: 25 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGA-FGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSA-EGAKL 660 V +LEG+ TV LP + +R D++ N RQPY +AG +TSAESWG G V+ +PRV G AG+ A + G + APT + W +++N ++R P V RGH I+ VP +P+VV D + + K + K +G +AD E+AK ++ IR GKGK R RRY+ K L V EG KL Sbjct: 5 VFNLEGEEV----DTVELPSFFEEPVRKDLIRRAVLAAQANRRQPYGTDPRAGFRTSAESWGAGHGVAMVPRVKGRRHPAAGRAARVAQAVGGQKAHAPTP-EKDWTQRVNRKERRAALRSALAATAKPEFVKERGHVIDDVPHLPVVVVDELKSLNKAREVREFFKSVGLWADVERAKSNRRIRAGKGKRRGRRYVKPKSVLIVVDEDEGIKL 213
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_METS3 (50S ribosomal protein L4P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl4p PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 4.682e-27 Identity = 67/213 (31.46%), Postives = 109/213 (51.17%), Query Frame = 1 Query: 25 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAE-GAKL 660 V S+EG++ + + LP + RPD++ + QP+ +AG +TSA+ WG+GR +R+PR+ G + AF GGR PT+ + H KIN+ ++R+ LV RGH++ + ++P++V D V+ T ++ + +G Y D +AK+ + IR G+GK R R+Y KGPL V + G KL Sbjct: 5 VYSMEGEVKEE----IELPAIFNEEYRPDLIKRAVISAQTARVQPWGNDPEAGKRTSAKGWGSGRGTARVPRIKNGS-----KAAFVPMAVGGRRAHPTRAEKNHHEKINIKERRFAIRSAVAATANKELVENRGHRLGDLEQVPIIVEDDICSVKTTKQTREIFQNLGVYDDITRAKEGKRIRAGRGKTRGRKYKKVKGPLLVVGEDNGIKL 208
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_PYRAE (50S ribosomal protein L4P OS=Pyrobaculum aerophilum GN=rpl4p PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.043e-26 Identity = 72/193 (37.31%), Postives = 99/193 (51.30%), Query Frame = 1 Query: 100 IRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRN 678 IRPD++ + + QP V + AG + S ES+G G ++RIPR G R G F RGGR P K+ ++ H +IN +K+ S V ARGH +E VP +P+VV AE + + A K+ + +G + D E+A + IR GKGKMR RRY K L V S A L+ A RN Sbjct: 52 IRPDLIRRAYLSALSARFQPKGVYEGAGKEHSCESFGVGLGIARIPRYKGSLWPR---GCFAPNTRGGRRAHPPKVEKKLHEEINKKEKKLAIRSAIAATAYRSWVAARGHVVEKVPSLPVVVVGDAEKINRAKEAKKLFEALGLWPDVERAAEGVKIRAGKGKMRGRRYKEPKSVLVVVSDLNAPLIAAVRN 241
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_METBF (50S ribosomal protein L4P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl4p PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.964e-26 Identity = 72/213 (33.80%), Postives = 105/213 (49.30%), Query Frame = 1 Query: 43 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681 D+ + LPDV RPD++ N QPY AG +TSA WG+GR S +PR+ + + A RGGR P K K+N ++RY P+LV RGH E E+P+V ++ E ++KT ++ L+ IG Y D +AK + IR G+GK+R R+Y +K L V + E A ++KA RN+ Sbjct: 8 DLTGKVVREIELPDVFDVDYRPDLIKKAVLAAQANRLQPYGPRLYAGMETSARGWGSGRGTSHVPRLVN-----SSRAARVPHARGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATRDPTLVSLRGHIFEA--ELPIVTENALEDLDKTKQVIEFLQAIGVYEDVLRAKYGRHIRAGRGKLRGRKYKHKKSVLIV-AGESAPILKAARNL 212
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_METMJ (50S ribosomal protein L4P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl4p PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 5.177e-26 Identity = 75/220 (34.09%), Postives = 113/220 (51.36%), Query Frame = 1 Query: 25 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGG-THRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681 V++L G++A + + LP++ + RPD++ + QP+ + AG +TSAESWG+GR +++PR+ G R Q GGR P K+ + ++IN +KR P LV RGH E ++PLV D E V +T + L +G YAD E+AK S+ +R G+G MR RRY RK L V G + ++A RN+ Sbjct: 5 VRTLTGEIAHE----IDLPEIFREEYRPDLIKRAVLALQSTRFQPHGTNPYAGMRTSAESWGSGRGAAQVPRLKNGSRVARVPQAT------GGRAAHPPKVEKILVKEINRKEKRKALRSAVAASTYPDLVRERGHLFEG--DLPLVFEDRFEEVTRTGDVIAALTALGVYADVERAKGSRKVRAGRGTMRGRRYKQRKSVLIV---TGGEPLRAARNL 209
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_METST (50S ribosomal protein L4P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl4p PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25 Identity = 64/206 (31.07%), Postives = 106/206 (51.46%), Query Frame = 1 Query: 19 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXV 636 + V SL+GD+ + + LP++ + RPD++ ++ QP+ AG +T+AES+G+GR + +PRV G + + AF GGR P ++ +H KIN ++ LV RGH++ + ++P V+ D E V+ T ++ K +G D +AK + I+ GKGK+R R+Y + KGPL V Sbjct: 4 INVYSLKGDITEE----IELPEIFEEEYRPDVIKRAVISMQTARIQPWGTDPMAGKRTTAESFGSGRGAAMVPRVKG-----SSKAAFVPQAIGGRKAHPPRVNTIYHEKINKKERTLAIRSAIAATANKELVEQRGHQVSELEQIPFVIDDEIETVKTTKETREIFKDLGIMDDIVRAKKGRKIKSGKGKLRGRKYRTPKGPLVV 200
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_METBU (50S ribosomal protein L4P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl4p PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.383e-25 Identity = 75/214 (35.05%), Postives = 103/214 (48.13%), Query Frame = 1 Query: 43 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGG-THRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681 D++ ++ + LP+V RPD++ + N QPY AG QTSA SWG+GR V+++PR+ G R Q GGR P K KIN +KR LV ARGHK E+P V D+ E + K + L+ G Y D +AK+ + IR GKGK R R+Y +RK L V + E + L KA N+ Sbjct: 8 DLSGNSKGEIALPEVFSEIFRPDLIKKAVLSAQANRLQPYGTKLYAGMQTSAHSWGSGRGVAQVPRISNGSRVARIPQAV------GGRRAHPPKTETDRTEKINKKEKRLAVRSAIAATIDADLVKARGHKF--TAEVPFVADDAIEGLVKIKEVISFLQAAGLYDDIIRAKEGKHIRAGKGKRRGRKYKNRKSVLIV-TGEESLLSKAANNL 212 The following BLAST results are available for this feature:
BLAST of CF417341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417341 ID=CF417341; Name=CF417341; organism=Citrus sinensis; type=EST; length=683bpback to top |