CF417341

Overview
NameCF417341
Unique NameCF417341
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6266 contig Csv1_Contig6266:98..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_CAEEL (60S ribosomal protein L4 OS=Caenorhabditis elegans GN=rpl-4 PE=1 SV=3)

HSP 1 Score: 222.631 bits (566), Expect = 1.492e-57
Identity = 115/226 (50.88%), Postives = 150/226 (66.37%), Query Frame = 1
Query:    4 AARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            AARPLVTV   + +      S + LP V +  IRPD+V F+   + +N RQ +AV+ KAG Q SAESWGTGRAV+RIPRV GGGTHR+GQGAFG   RGG MFAP K++RRWHR +N+ QKRY           P+L+ ARGH I+ V E+PLVVSD  E   KT  A+  L++   +AD EK  +S+  R GKGK+RNR++  + GP+ +Y  + A+  +AFRNI
Sbjct:    2 AARPLVTVYDEKYEAT---QSQIRLPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVIY-GQDAECARAFRNI 223          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_ENTHI (60S ribosomal protein L4 (Fragments) OS=Entamoeba histolytica GN=RPL4 PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 3.822e-37
Identity = 85/177 (48.02%), Postives = 107/177 (60.45%), Query Frame = 1
Query:  175 KAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLV--------VSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            KAG Q SA SWGTGRAV+RIPR+ G G+ R GQGAFG   R G MF+P K +R+W RK     +R+           P+LV ARGH I  VP++P V         S S   ++KT  A+ +LK+I AY+D  K   S+ IR G+GKMR R+   RKGPL VY  +  + VKAFRNI
Sbjct:    3 KAGKQHSAISWGTGRAVARIPRISGSGSGRNGQGAFGNMTRKGHMFSPLKNFRKWQRKTPKQMRRFAVASCIAASAVPALVSARGHHIAGVPQLPSVSFLQPQFHSSKSISVIKKTKQAVYLLKKINAYSDVLKVIASKTIRAGQGKMRGRKIKERKGPLVVYGNDDLQAVKAFRNI 179          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_METTH (50S ribosomal protein L4P OS=Methanobacterium thermoautotrophicum GN=rpl4p PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29
Identity = 70/206 (33.98%), Postives = 110/206 (53.40%), Query Frame = 1
Query:   19 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXV 636
            + V SLEG+    A   + LP++     RPD++     +      QP+     AG +TSA+S+G GR V+ +PR+  G      + AF     GGR   P +  + +H +IN  ++R              LV ARGH+IE VP++PLVV D    +++T+   +V +++G   D  +A++ + IR GKGKMR R+Y + +GPL V
Sbjct:    3 IKVYSLEGE----AIDEMELPEIFNEEFRPDVIKRAVLSAQTARVQPWGPDPMAGKRTSAQSYGAGRGVAMVPRIKNGS-----RAAFVPQAVGGRRAHPPRPQKNYHERINRKERRLAIRSAVAATARKDLVEARGHRIENVPQLPLVVDDELSMIKRTADTREVFRKLGIMDDIVRAREGKKIRAGKGKMRGRKYRTPRGPLIV 199          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_METKA (50S ribosomal protein L4P OS=Methanopyrus kandleri GN=rpl4p PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.456e-28
Identity = 77/214 (35.98%), Postives = 108/214 (50.47%), Query Frame = 1
Query:   25 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGA-FGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSA-EGAKL 660
            V +LEG+       TV LP   +  +R D++         N RQPY    +AG +TSAESWG G  V+ +PRV G     AG+ A   +   G +  APT   + W +++N  ++R            P  V  RGH I+ VP +P+VV D  + + K     +  K +G +AD E+AK ++ IR GKGK R RRY+  K  L V    EG KL
Sbjct:    5 VFNLEGEEV----DTVELPSFFEEPVRKDLIRRAVLAAQANRRQPYGTDPRAGFRTSAESWGAGHGVAMVPRVKGRRHPAAGRAARVAQAVGGQKAHAPTP-EKDWTQRVNRKERRAALRSALAATAKPEFVKERGHVIDDVPHLPVVVVDELKSLNKAREVREFFKSVGLWADVERAKSNRRIRAGKGKRRGRRYVKPKSVLIVVDEDEGIKL 213          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_METS3 (50S ribosomal protein L4P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.682e-27
Identity = 67/213 (31.46%), Postives = 109/213 (51.17%), Query Frame = 1
Query:   25 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAE-GAKL 660
            V S+EG++  +    + LP +     RPD++     +      QP+    +AG +TSA+ WG+GR  +R+PR+  G      + AF     GGR   PT+  +  H KIN+ ++R+             LV  RGH++  + ++P++V D    V+ T    ++ + +G Y D  +AK+ + IR G+GK R R+Y   KGPL V   + G KL
Sbjct:    5 VYSMEGEVKEE----IELPAIFNEEYRPDLIKRAVISAQTARVQPWGNDPEAGKRTSAKGWGSGRGTARVPRIKNGS-----KAAFVPMAVGGRRAHPTRAEKNHHEKINIKERRFAIRSAVAATANKELVENRGHRLGDLEQVPIIVEDDICSVKTTKQTREIFQNLGVYDDITRAKEGKRIRAGRGKTRGRKYKKVKGPLLVVGEDNGIKL 208          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_PYRAE (50S ribosomal protein L4P OS=Pyrobaculum aerophilum GN=rpl4p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.043e-26
Identity = 72/193 (37.31%), Postives = 99/193 (51.30%), Query Frame = 1
Query:  100 IRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRN 678
            IRPD++   + +      QP  V + AG + S ES+G G  ++RIPR  G    R   G F    RGGR   P K+ ++ H +IN  +K+             S V ARGH +E VP +P+VV   AE + +   A K+ + +G + D E+A +   IR GKGKMR RRY   K  L V S   A L+ A RN
Sbjct:   52 IRPDLIRRAYLSALSARFQPKGVYEGAGKEHSCESFGVGLGIARIPRYKGSLWPR---GCFAPNTRGGRRAHPPKVEKKLHEEINKKEKKLAIRSAIAATAYRSWVAARGHVVEKVPSLPVVVVGDAEKINRAKEAKKLFEALGLWPDVERAAEGVKIRAGKGKMRGRRYKEPKSVLVVVSDLNAPLIAAVRN 241          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_METBF (50S ribosomal protein L4P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.964e-26
Identity = 72/213 (33.80%), Postives = 105/213 (49.30%), Query Frame = 1
Query:   43 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            D+       + LPDV     RPD++         N  QPY     AG +TSA  WG+GR  S +PR+       + + A     RGGR   P K       K+N  ++RY           P+LV  RGH  E   E+P+V  ++ E ++KT   ++ L+ IG Y D  +AK  + IR G+GK+R R+Y  +K  L V + E A ++KA RN+
Sbjct:    8 DLTGKVVREIELPDVFDVDYRPDLIKKAVLAAQANRLQPYGPRLYAGMETSARGWGSGRGTSHVPRLVN-----SSRAARVPHARGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATRDPTLVSLRGHIFEA--ELPIVTENALEDLDKTKQVIEFLQAIGVYEDVLRAKYGRHIRAGRGKLRGRKYKHKKSVLIV-AGESAPILKAARNL 212          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_METMJ (50S ribosomal protein L4P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.177e-26
Identity = 75/220 (34.09%), Postives = 113/220 (51.36%), Query Frame = 1
Query:   25 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGG-THRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            V++L G++A +    + LP++ +   RPD++      +     QP+  +  AG +TSAESWG+GR  +++PR+  G    R  Q        GGR   P K+ +   ++IN  +KR            P LV  RGH  E   ++PLV  D  E V +T   +  L  +G YAD E+AK S+ +R G+G MR RRY  RK  L V    G + ++A RN+
Sbjct:    5 VRTLTGEIAHE----IDLPEIFREEYRPDLIKRAVLALQSTRFQPHGTNPYAGMRTSAESWGSGRGAAQVPRLKNGSRVARVPQAT------GGRAAHPPKVEKILVKEINRKEKRKALRSAVAASTYPDLVRERGHLFEG--DLPLVFEDRFEEVTRTGDVIAALTALGVYADVERAKGSRKVRAGRGTMRGRRYKQRKSVLIV---TGGEPLRAARNL 209          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_METST (50S ribosomal protein L4P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25
Identity = 64/206 (31.07%), Postives = 106/206 (51.46%), Query Frame = 1
Query:   19 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXV 636
            + V SL+GD+  +    + LP++ +   RPD++     ++     QP+     AG +T+AES+G+GR  + +PRV G     + + AF     GGR   P ++   +H KIN  ++               LV  RGH++  + ++P V+ D  E V+ T    ++ K +G   D  +AK  + I+ GKGK+R R+Y + KGPL V
Sbjct:    4 INVYSLKGDITEE----IELPEIFEEEYRPDVIKRAVISMQTARIQPWGTDPMAGKRTTAESFGSGRGAAMVPRVKG-----SSKAAFVPQAIGGRKAHPPRVNTIYHEKINKKERTLAIRSAIAATANKELVEQRGHQVSELEQIPFVIDDEIETVKTTKETREIFKDLGIMDDIVRAKKGRKIKSGKGKLRGRKYRTPKGPLVV 200          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_METBU (50S ribosomal protein L4P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.383e-25
Identity = 75/214 (35.05%), Postives = 103/214 (48.13%), Query Frame = 1
Query:   43 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGG-THRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            D++ ++   + LP+V     RPD++     +   N  QPY     AG QTSA SWG+GR V+++PR+  G    R  Q        GGR   P K       KIN  +KR              LV ARGHK     E+P V  D+ E + K    +  L+  G Y D  +AK+ + IR GKGK R R+Y +RK  L V + E + L KA  N+
Sbjct:    8 DLSGNSKGEIALPEVFSEIFRPDLIKKAVLSAQANRLQPYGTKLYAGMQTSAHSWGSGRGVAQVPRISNGSRVARIPQAV------GGRRAHPPKTETDRTEKINKKEKRLAVRSAIAATIDADLVKARGHKF--TAEVPFVADDAIEGLVKIKEVISFLQAAGLYDDIIRAKEGKHIRAGKGKRRGRKYKNRKSVLIV-TGEESLLSKAANNL 212          
The following BLAST results are available for this feature:
BLAST of CF417341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RL4_CAEEL1.492e-5750.8860S ribosomal protein L4 OS=Caenorhabditis elegans... [more]
RL4_ENTHI3.822e-3748.0260S ribosomal protein L4 (Fragments) OS=Entamoeba ... [more]
RL4_METTH8.533e-2933.9850S ribosomal protein L4P OS=Methanobacterium ther... [more]
RL4_METKA1.456e-2835.9850S ribosomal protein L4P OS=Methanopyrus kandleri... [more]
RL4_METS34.682e-2731.4650S ribosomal protein L4P OS=Methanobrevibacter sm... [more]
RL4_PYRAE1.043e-2637.3150S ribosomal protein L4P OS=Pyrobaculum aerophilu... [more]
RL4_METBF3.964e-2633.8050S ribosomal protein L4P OS=Methanosarcina barker... [more]
RL4_METMJ5.177e-2634.0950S ribosomal protein L4P OS=Methanoculleus marisn... [more]
RL4_METST1.153e-2531.0750S ribosomal protein L4P OS=Methanosphaera stadtm... [more]
RL4_METBU4.383e-2535.0550S ribosomal protein L4P OS=Methanococcoides burt... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-271 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417341 ID=CF417341; Name=CF417341; organism=Citrus sinensis; type=EST; length=683bp
GCCGCTGCCCGTCCTCTTGTCACCGTCCAGTCTTTGGAAGGTGACATGGC
CACCGACGCAAGCTCCACCGTCCCCTTGCCCGACGTCATGAAGGCCTCTA
TCCGACCCGACATCGTGGGCTTCGTTCACTCTAACATCTCCAAGAACAGC
CGCCAGCCTTACGCCGTTTCCAAGAAGGCAGGGCACCAGACCTCCGCCGA
ATCATGGGGTACCGGTCGCGCCGTATCCCGTATCCCCCGAGTTCCCGGAG
GCGGTACCCACCGTGCCGGCCAGGGAGCCTTCGGTAAATGTGGTCGCGGT
GGTCGCATGTTCGCTCCCACAAAGATCTGGCGCCGATGGCACCGTAAGAT
CAACGTCAATCAAAAGCGATACGCCATCGTTTCCGCCATTGCCGCCTCCG
CTGTCCCCTCACTTGTGATGGCCCGTGGTCACAAGATCGAGACTGTTCCG
GAAATGCCCCTGGTCGTCAGTGATTCCGCCGAATGTGTTGAGAAAACATC
AGCTGCTCTTAAAGTTCTGAAGCAGATCGGTGCATATGCTGACGCCGAGA
AGGCGAAGGACAGCCAGGGGATTCGCCCTGGAAAGGGTAAAATGAGAAAT
AGGCGTTACATTTCTCGCAAGGGCCCGCTTGNTGTGTACTCAGCCGAGGG
TGCTAAGCTTGTCAAGGCTTTTAGGAACATTCC
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