CF417341

Overview
NameCF417341
Unique NameCF417341
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_METMP (50S ribosomal protein L4P OS=Methanococcus maripaludis GN=rpl4p PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25
Identity = 78/221 (35.29%), Postives = 108/221 (48.87%), Query Frame = 1
Query:   19 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            V V +L+G    D    + LP V +A  RPD++     +      QP      AG++TSA+S G G   +R+ R   G       GAF     GGR   P K+ +    +IN  +K             P +V ARGHKIE VP +PLVV+   E + KT   L+V K +   AD E+AKD   IR G+GK+R R+YI  K  L V   +  + + A RN+
Sbjct:    3 VKVYNLDGSEKGD----IELPAVFEAEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKEKLKALASAIAASANPEIVSARGHKIEGVPSLPLVVNAEFESLVKTKEVLEVFKTLKLDADLERAKDGVKIRAGRGKLRGRKYIKPKSVLVVV-GDACEAITASRNL 212          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_METAC (50S ribosomal protein L4P OS=Methanosarcina acetivorans GN=rpl4p PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25
Identity = 73/213 (34.27%), Postives = 105/213 (49.30%), Query Frame = 1
Query:   43 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            D+   A   V LP V  A  RPD++         N  QPY     +G +TSA  WG+GR VS +PR+    + RA +    K   GGR   P K       K+N  ++RY           P+LV  RGH  E   E+P+V  +  E +E+T   ++ L+  G Y D  +AK  + IR G+GK+R R+Y  +K  L V + E   ++KA RN+
Sbjct:    8 DLTGKAVGEVELPAVFDADYRPDLIKKAVLAAQANRLQPYGPRLYSGMETSARGWGSGRGVSHVPRLV--NSSRAARVPHAK---GGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATTDPTLVSLRGHIFEA--ELPIVAVNDLESLERTKQVIEFLEAAGLYEDVLRAKYGRHIRAGRGKLRGRKYKHKKSVLIV-AGENTPILKAARNL 212          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_METMA (50S ribosomal protein L4P OS=Methanosarcina mazei GN=rpl4p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.476e-25
Identity = 73/213 (34.27%), Postives = 106/213 (49.77%), Query Frame = 1
Query:   43 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            D+       + LP V  A  RPD++         N  QPY  S  AG +TSA  WG+GR VS +PR+    + RA +    K   GGR   P K       K+N  ++RY           P+LV  RGH  E   E+P+V  +  E +E+T   ++ L+  G Y D  +AK  + IR G+GK+R R+Y  +K  L V + E + ++KA RN+
Sbjct:    8 DLTGRTVGEIELPAVFDADYRPDLIKKAVLAAQANRLQPYGPSLYAGMKTSATGWGSGRGVSHVPRLK--NSSRAARVPHAK---GGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATIDPTLVNLRGHIFEA--ELPIVAVNDLENLERTKQVIEFLEAAGLYEDVLRAKYGRHIRAGRGKLRGRKYKHKKSVLIV-AGENSPILKAARNL 212          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_HALWD (50S ribosomal protein L4P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.763e-25
Identity = 70/215 (32.56%), Postives = 106/215 (49.30%), Query Frame = 1
Query:   22 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVK 666
            T+ +L GD A     T+ LP V +   RPD++         N +QPY     AG +T AES+G+GR ++ +PR   G   R  Q         GR   P K  +   + +N  +++            PS V  RGH+ E   E+PLVVSD  E + KT   + VL+ +G +AD  ++ +++ IR G+GK R R+Y   K  L + S E +K  +
Sbjct:    4 TIHNLNGDKA----DTLELPAVFETPYRPDVIERAVVAAQANRKQPYGADPYAGMRTPAESFGSGRGMAHVPR-ENGQARRVPQAV------SGRKAHPPKAEKDQSKSVNTKERKLAFQSAVAATADPSQVEERGHQFENDVELPLVVSDEFEELIKTQEVVDVLESLGVHADIVRSDENKSIRAGRGKTRGRKYRRPKSILFITSDEPSKAAR 207          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_SULAC (50S ribosomal protein L4P OS=Sulfolobus acidocaldarius GN=rpl4p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.275e-24
Identity = 71/221 (32.13%), Postives = 112/221 (50.68%), Query Frame = 1
Query:   19 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            V+V  L+G+   +    + LP      +R D++  V  +    S QP      AG +TSA S+G    ++R+PRV G     +G+ A      GGR+  P    +R   ++N+ +K+            P+ V ARGH+  T   +P+++ D  E + K    + +LK IG   D ++ K+S+G+R GKGKMR RRY   KGPL V S   + +V++  NI
Sbjct:   10 VSVLDLKGNQLEE----IELPLFFSYPVRKDLIRRVFLSEFTKSLQPKGRDPLAGKRTSALSFGINLGIARVPRVKG-----SGEAALAPNTVGGRLAFPPTTEKRLVEEVNLKEKKLGIISALAATADPNFVKARGHRF-TSNNVPIILVDDFENISKAKEIMDILKSIGVVDDIKRVKESKGVRAGKGKMRGRRYQIAKGPLIVVSNHKSPVVESASNI 220          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_ARCFU (50S ribosomal protein L4P OS=Archaeoglobus fulgidus GN=rpl4p PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.665e-24
Identity = 74/219 (33.79%), Postives = 107/219 (48.86%), Query Frame = 1
Query:   25 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            V +L+G++  +    + LP+V     RPDI+      +  + RQPY  +  +G   S E+WG G   +R+PR   G        A G     GR   P K  R+W  KIN  + R              LV  R H  E   E+P VVS+  E V++T    +V + IG YAD E+AK+ +  R G+GKMR RRY+ +K  L V   +   +VKA +N+
Sbjct:    5 VLNLKGEVTEE----IELPEVFAEEFRPDIIKRAVLALQSHRRQPYGPNPLSGVDYSWENWGPGHGYARVPRWKLGRRAVVVPQAVG-----GRRAHPPKPERKWAEKINKKEMRKALKSAIAATANEELVRQRSHVFEG--ELPKVVSNELESVKRTKDVAEVFRAIGVYADVERAKERKRYRAGRGKMRGRRYVKKKSVLLVVGKDDG-VVKAAKNL 211          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_SULSO (50S ribosomal protein L4P OS=Sulfolobus solfataricus GN=rpl4p PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.841e-23
Identity = 67/204 (32.84%), Postives = 101/204 (49.51%), Query Frame = 1
Query:   70 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            V LP +    +R D++  V      +S QP      AG +TSAES+G    ++R+PRV       +G+ A      GGR+  P  + ++   + NV +KR             + V ARGH  +     P+VV+D    ++ TS   + LK+IG Y D E+ K+   IR GKGKMR R+Y    GPL +     + ++KA RN+
Sbjct:   23 VELPIIFSFPVRKDLIRRVFIAEFTHSLQPKGRDPNAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLAFPPSVNKKLAEEANVKEKRLAVISALSATADIAFVRARGHVFKDSVRFPIVVTDDIVNLKTTSEVEEFLKKIGVYDDVERVKERIRIRAGKGKMRGRKYKEPIGPLIIVHDSNSPIIKAARNL 221          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_THEGJ (50S ribosomal protein L4P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.102e-23
Identity = 74/220 (33.64%), Postives = 105/220 (47.73%), Query Frame = 1
Query:   19 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRN 678
            V V +LEG+   +    + LP V     RPD++         +  QP      AG +   E+ G G  ++R+ R+           AF    RGGR   P K+ +     IN  ++R            P LV ARGH ++ VP  PLVV D  + V KT+   ++ K++G + D E+AK +  IR GKGKMR RRY   KGPL V  A+   +V+  RN
Sbjct:    3 VKVFNLEGEPVEE----IELPKVFSTPFRPDLIRRAVIASWTHRIQPQGRDPLAGKRRVTENIGKGHGMARVERIKTPPRF----AAFVPFARGGRRTHPPKVEKIIWEDINKKERRLAIMSAIAATANPDLVRARGHVVDNVPAFPLVVVDDLQKVFKTAQTREIFKKLGIWDDIERAKRNTKIRAGKGKMRGRRYKKAKGPLIVV-AKNEGIVQGARN 213          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_THEAC (50S ribosomal protein L4P OS=Thermoplasma acidophilum GN=rpl4p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.357e-23
Identity = 68/221 (30.77%), Postives = 108/221 (48.87%), Query Frame = 1
Query:   19 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            V + S+ G+M  +    + LP+V    +R DI+      IS + RQPY  S  AG +    +   G  +SR+PR+ GG        A G     G+     +  +  + KIN  +++               V  RGH+ +   ++P+VV D  E + KT  A+ +LK +G Y D E++++ + IR G+GKMR RRY   K  L V  A  +  +KAFR++
Sbjct:    5 VPIYSVSGEMKGE----IDLPEVFDTEVREDIIRRAFRAISLSMRQPYGSSPLAGMRRVGHTTRPGLGISRMPRIAGGSRVVGIASAVG-----GKSAHSPRTTKNLYVKINDRERKMAKYSAIALTASVEAVKKRGHRFKEGLKLPIVVEDGVEGINKTKDAIALLKNLGVYEDIERSREGKHIRAGRGKMRGRRYKQPKSVLIV--ARNSSAMKAFRSL 214          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_HALLT (50S ribosomal protein L4P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.997e-23
Identity = 72/215 (33.49%), Postives = 107/215 (49.77%), Query Frame = 1
Query:   22 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVK 666
            TV  L+G    DA S V LP + + + RPD++G   S    N +Q Y   + AG +T AES+G+GR ++ IPR       R    A       GR   P K  +   + +N  +++               V  RGH  +   ++PLVVSD  E + KT  AL VL+ +GA AD E+A++ + +R G+GK R R+Y   K  L V S E ++  +
Sbjct:    4 TVHDLDGG---DAGS-VELPAIFETAFRPDLIGRAVSAAQANRKQAYGADEFAGLRTPAESFGSGRGLAHIPR--SENVARRVPNAVS-----GRAAHPPKAEKDQTKSLNDKERQLAIRSAIAATADAETVAERGHAFDEDLDLPLVVSDEFEDLNKTQEALGVLEAVGADADIERAEEGRSVRAGRGKTRGRKYSQPKSVLVVTSEEPSRAAR 207          
The following BLAST results are available for this feature:
BLAST of CF417341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RL4_METMP5.724e-2535.2950S ribosomal protein L4P OS=Methanococcus maripal... [more]
RL4_METAC5.724e-2534.2750S ribosomal protein L4P OS=Methanosarcina acetiv... [more]
RL4_METMA7.476e-2534.2750S ribosomal protein L4P OS=Methanosarcina mazei ... [more]
RL4_HALWD9.763e-2532.5650S ribosomal protein L4P OS=Haloquadratum walsbyi... [more]
RL4_SULAC1.275e-2432.1350S ribosomal protein L4P OS=Sulfolobus acidocalda... [more]
RL4_ARCFU1.665e-2433.7950S ribosomal protein L4P OS=Archaeoglobus fulgidu... [more]
RL4_SULSO1.841e-2332.8450S ribosomal protein L4P OS=Sulfolobus solfataric... [more]
RL4_THEGJ4.102e-2333.6450S ribosomal protein L4P OS=Thermococcus gammatol... [more]
RL4_THEAC5.357e-2330.7750S ribosomal protein L4P OS=Thermoplasma acidophi... [more]
RL4_HALLT6.997e-2333.4950S ribosomal protein L4P OS=Halorubrum lacusprofu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-271 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417341 ID=CF417341; Name=CF417341; organism=Citrus sinensis; type=EST; length=683bp
GCCGCTGCCCGTCCTCTTGTCACCGTCCAGTCTTTGGAAGGTGACATGGC
CACCGACGCAAGCTCCACCGTCCCCTTGCCCGACGTCATGAAGGCCTCTA
TCCGACCCGACATCGTGGGCTTCGTTCACTCTAACATCTCCAAGAACAGC
CGCCAGCCTTACGCCGTTTCCAAGAAGGCAGGGCACCAGACCTCCGCCGA
ATCATGGGGTACCGGTCGCGCCGTATCCCGTATCCCCCGAGTTCCCGGAG
GCGGTACCCACCGTGCCGGCCAGGGAGCCTTCGGTAAATGTGGTCGCGGT
GGTCGCATGTTCGCTCCCACAAAGATCTGGCGCCGATGGCACCGTAAGAT
CAACGTCAATCAAAAGCGATACGCCATCGTTTCCGCCATTGCCGCCTCCG
CTGTCCCCTCACTTGTGATGGCCCGTGGTCACAAGATCGAGACTGTTCCG
GAAATGCCCCTGGTCGTCAGTGATTCCGCCGAATGTGTTGAGAAAACATC
AGCTGCTCTTAAAGTTCTGAAGCAGATCGGTGCATATGCTGACGCCGAGA
AGGCGAAGGACAGCCAGGGGATTCGCCCTGGAAAGGGTAAAATGAGAAAT
AGGCGTTACATTTCTCGCAAGGGCCCGCTTGNTGTGTACTCAGCCGAGGG
TGCTAAGCTTGTCAAGGCTTTTAGGAACATTCC
back to top