CF417341
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_METVS (50S ribosomal protein L4P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl4p PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 8.553e-21 Identity = 71/221 (32.13%), Postives = 101/221 (45.70%), Query Frame = 1 Query: 19 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681 V V +L+G + LP V + RPD++ + QP AG++TSA+S G G +R+ R G GAF GGR P K+ + +IN ++ +V ARGHKIE VP +PLVV+ E + KT L V K + AD E+AKD I+ G+ K+R R+Y + L V + V A RN+ Sbjct: 3 VKVYNLDGS----EKGAIELPSVFETEYRPDVIKRAVISSLTARLQPKGSDPLAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKERLKALASAIAASANSEIVAARGHKIEGVPSLPLVVNAEFESLVKTKEVLSVFKALKLEADLERAKDGIKIKAGRAKLRGRKYKKPRSVLVVV-GDACDAVAASRNL 212
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_METTP (50S ribosomal protein L4P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl4p PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.459e-20 Identity = 67/213 (31.46%), Postives = 99/213 (46.48%), Query Frame = 1 Query: 43 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681 D++ + + LP + RPD++ N QPY AG TSA SWG G VSR+PR+ G RA + GR P+K+ KIN ++ P +V ARGH E+P+VV E + KTS + L G + D +AK+ + +R GKGK+R RR+ + L V +A+ + +A RN+ Sbjct: 7 DISGNPVGEIVLPAIFDEEYRPDLIKRAVLAAQANRLQPYGPHFYAGMNTSARSWGPGHGVSRVPRIVTG--RRAAAVPMARGGRASHPPVPSKV---LSEKINEKERIKAIRSAVAATAKPDIVAARGHLFS--GELPIVVRGEIESISKTSELRRFLMAAGLWDDVMRAKNGRKVRAGKGKIRGRRFRQPRSILIVAAADNG-IGRAARNL 211
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_SULTO (50S ribosomal protein L4P OS=Sulfolobus tokodaii GN=rpl4p PE=3 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20 Identity = 64/213 (30.05%), Postives = 99/213 (46.48%), Query Frame = 1 Query: 43 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681 D+ + + LP +R D++ V + + QP AG +TSA S+G ++R+PRV G+ A GGR+ P + ++ ++N +K+ + V RGH + ++ +P++V D + KT ++VL+ + Y D E+ KD IR GKGKMR RRY KGPL V VKA NI Sbjct: 14 DLKGNKVEEIELPIFFSYPVRKDLIRRVFISEFTKALQPKGRDPMAGKRTSALSFGINLGLARVPRVK-----TTGEAALAPNTVGGRLAFPPTVEKKLVEEVNKKEKKLAIISALSATANMNFVKNRGH-VFSIDTLPIIVVDDITKLTKTKEIIEVLESLKVYEDVERVKDRIRIRSGKGKMRGRRYKEPKGPLFVIHENNPVFVKAASNI 220
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_THEVO (50S ribosomal protein L4P OS=Thermoplasma volcanium GN=rpl4p PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.593e-19 Identity = 61/206 (29.61%), Postives = 98/206 (47.57%), Query Frame = 1 Query: 19 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXV 636 V + S+ G+ + + LP++ S+R D++ IS + RQPY S AG + + G +SR+PR+ GG A G G+ + ++ + IN +++ V RGH+ +P+VV D+ ++KT A+ +LK IG Y D ++K+ + IR G+GKMRNRRY K L V Sbjct: 5 VPIYSINGEKRGE----IDLPEIFNYSVREDLIRKAFRAISLSLRQPYGSSPLAGLRRVGHTTKPGLGISRMPRIAGGSRVVGIASAVG-----GKSAHSPRSTKKLYVGINEKERKMAKFSAIAMTASADAVRKRGHRFSESLPLPVVVEDAVSGIKKTKDAVNLLKSIGLYEDILRSKEGKHIRAGRGKMRNRRYKVPKSLLIV 201
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_NATPD (50S ribosomal protein L4P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl4p PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.693e-19 Identity = 66/207 (31.88%), Postives = 96/207 (46.38%), Query Frame = 1 Query: 22 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYS 642 TV+ L+GD A + V LP V + RPD++ N Q + AG +T AES G+GR ++ +PR G Q GR P K + IN +++ V RGH+ + ++PLVVSD E + KT A+ VL+ +G Y D E+A+D + +R G+G R R+Y K L V S Sbjct: 4 TVRDLDGDDAGE----VELPAVFETDYRPDLIKRAVLAAQANRIQDTGTDEYAGLRTPAESPGSGRGMAHVPR-QNGRAREVPQAV------SGRPAHPPKAEKDRGLDINTKERKLATRSAIAATANADRVEERGHEFDEETDLPLVVSDEFEDLVKTQEAVDVLEALGVYDDIERAEDGKTVRAGRGTTRGRKYTEPKSVLVVTS 199
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_METJA (50S ribosomal protein L4P OS=Methanocaldococcus jannaschii GN=rpl4p PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.510e-17 Identity = 62/209 (29.67%), Postives = 95/209 (45.45%), Query Frame = 1 Query: 55 DASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681 +A + LP V + RPD++ + QP AG +TSA++ G G +R+ RVP G R Q GGR P K+ + ++N ++ P LV RGH ET +P++V S E ++KT V +++G D +AK+ IR GKGKMR R+Y + + V + + A RN+ Sbjct: 11 EAVKEIDLPAVFEEEYRPDLIKRAFLSAFTARLQPKGSDPLAGLRTSAKNIGKGHGRARVDRVPQGWAARVPQAV------GGRRAHPPKVEKILWERVNKKERIKAIKSAIAATANPELVKERGHVFET-ENLPIIVESSFEELQKTKDVFAVFEKLGISDDVIRAKNGIKIRAGKGKMRGRKY-KKPRSILVVVGDKCNAILASRNL 211
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_AERPE (50S ribosomal protein L4P OS=Aeropyrum pernix GN=rpl4p PE=3 SV=3) HSP 1 Score: 86.6557 bits (213), Expect = 1.278e-16 Identity = 64/209 (30.62%), Postives = 97/209 (46.41%), Query Frame = 1 Query: 67 TVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKI--ETVPEMPLVVSDSAECVEKTSA--ALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681 +V LP + + +R D++ + QP AG +TSA S G GR V+R+PR+ G + + A RGGR P ++ + IN +KR LV RGH+ ET+P +V DS+ + ++A A +L+ +G Y D +AK+ + GKGKMR RRY K L V + L A + + Sbjct: 28 SVVLPQIFRFPVRKDLIRRAFLSEFTARLQPKGRDPMAGKRTSAVSLGVGRGVARVPRIKG-----SLRAALVNMARGGRAAHPPRVEKVLKEYINKKEKRLATISAISATSREDLVRQRGHRFSAETLP----IVLDSSVLAKISTAREARSLLESVGVYEDVLRAKEGKRYNAGKGKMRGRRYKVPKSVLFVLEDPRSPLALAVKGM 227
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_NANEQ (50S ribosomal protein L4P OS=Nanoarchaeum equitans GN=rpl4p PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.847e-16 Identity = 72/218 (33.03%), Postives = 97/218 (44.50%), Query Frame = 1 Query: 70 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSA------ESWGT--GRAVSRIPRVPGGGTHRAGQGAFGKCGRG------GRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681 + LP IR D++ I + RQPY S AG Q SA SW T GR +SR+ R R F R G+ P K + W+ KIN ++R LV ARGH I+ +P+VV D E + KT ++L ++G + E+ + + R GKGK R R YI RKGPL V + +L KA NI Sbjct: 16 IELPPQFNEKIRFDVIKRAFLAIQSHKRQPYGASPIAGKQHSAWTSKRRRSWRTSYGRGISRVSRA----ILRRHGALFYWVARNIAQAVKGKKAHPPKAEKDWYEKINKKERRLAIRSALAATKELDLVKARGHIIDK--PVPIVV-DGLEQLRKTKEIQQLLLKLGLEKELERVYEIKR-RAGKGKRRGRAYIERKGPLIVVNDYNEQLFKAVDNI 225
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_HALMA (50S ribosomal protein L4P OS=Haloarcula marismortui GN=rpl4p PE=1 SV=4) HSP 1 Score: 82.4185 bits (202), Expect = 2.410e-15 Identity = 63/209 (30.14%), Postives = 98/209 (46.89%), Query Frame = 1 Query: 22 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAE 648 T+ L+G+ TD V LPDV + +R D++G N +Q Y + AG +T AES+G+GR + +P+ G R Q GR P K + +N +++ LV RGH+ + E+P+VVSD E + KT + +L+ + +AD ++A D I+ G+G R R+Y L V S E Sbjct: 4 TIYDLDGN--TDGE--VDLPDVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPK-QDGRARRVPQAV------KGRSAHPPKTEKDRSLDLNDKERQLAVRSALAATADADLVADRGHEFDR-DEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRA-DETKIKAGQGSARGRKYRRPASILFVTSDE 199 The following BLAST results are available for this feature:
BLAST of CF417341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417341 ID=CF417341; Name=CF417341; organism=Citrus sinensis; type=EST; length=683bpback to top |