CF417341

Overview
NameCF417341
Unique NameCF417341
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_METVS (50S ribosomal protein L4P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.553e-21
Identity = 71/221 (32.13%), Postives = 101/221 (45.70%), Query Frame = 1
Query:   19 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            V V +L+G         + LP V +   RPD++     +      QP      AG++TSA+S G G   +R+ R   G       GAF     GGR   P K+ +    +IN  ++               +V ARGHKIE VP +PLVV+   E + KT   L V K +   AD E+AKD   I+ G+ K+R R+Y   +  L V   +    V A RN+
Sbjct:    3 VKVYNLDGS----EKGAIELPSVFETEYRPDVIKRAVISSLTARLQPKGSDPLAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKERLKALASAIAASANSEIVAARGHKIEGVPSLPLVVNAEFESLVKTKEVLSVFKALKLEADLERAKDGIKIKAGRAKLRGRKYKKPRSVLVVV-GDACDAVAASRNL 212          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_METTP (50S ribosomal protein L4P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.459e-20
Identity = 67/213 (31.46%), Postives = 99/213 (46.48%), Query Frame = 1
Query:   43 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            D++ +    + LP +     RPD++         N  QPY     AG  TSA SWG G  VSR+PR+  G   RA      + GR      P+K+      KIN  ++             P +V ARGH      E+P+VV    E + KTS   + L   G + D  +AK+ + +R GKGK+R RR+   +  L V +A+   + +A RN+
Sbjct:    7 DISGNPVGEIVLPAIFDEEYRPDLIKRAVLAAQANRLQPYGPHFYAGMNTSARSWGPGHGVSRVPRIVTG--RRAAAVPMARGGRASHPPVPSKV---LSEKINEKERIKAIRSAVAATAKPDIVAARGHLFS--GELPIVVRGEIESISKTSELRRFLMAAGLWDDVMRAKNGRKVRAGKGKIRGRRFRQPRSILIVAAADNG-IGRAARNL 211          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_SULTO (50S ribosomal protein L4P OS=Sulfolobus tokodaii GN=rpl4p PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20
Identity = 64/213 (30.05%), Postives = 99/213 (46.48%), Query Frame = 1
Query:   43 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            D+  +    + LP      +R D++  V  +    + QP      AG +TSA S+G    ++R+PRV        G+ A      GGR+  P  + ++   ++N  +K+             + V  RGH + ++  +P++V D    + KT   ++VL+ +  Y D E+ KD   IR GKGKMR RRY   KGPL V        VKA  NI
Sbjct:   14 DLKGNKVEEIELPIFFSYPVRKDLIRRVFISEFTKALQPKGRDPMAGKRTSALSFGINLGLARVPRVK-----TTGEAALAPNTVGGRLAFPPTVEKKLVEEVNKKEKKLAIISALSATANMNFVKNRGH-VFSIDTLPIIVVDDITKLTKTKEIIEVLESLKVYEDVERVKDRIRIRSGKGKMRGRRYKEPKGPLFVIHENNPVFVKAASNI 220          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_THEVO (50S ribosomal protein L4P OS=Thermoplasma volcanium GN=rpl4p PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.593e-19
Identity = 61/206 (29.61%), Postives = 98/206 (47.57%), Query Frame = 1
Query:   19 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXV 636
            V + S+ G+   +    + LP++   S+R D++      IS + RQPY  S  AG +    +   G  +SR+PR+ GG        A G     G+     +  ++ +  IN  +++               V  RGH+      +P+VV D+   ++KT  A+ +LK IG Y D  ++K+ + IR G+GKMRNRRY   K  L V
Sbjct:    5 VPIYSINGEKRGE----IDLPEIFNYSVREDLIRKAFRAISLSLRQPYGSSPLAGLRRVGHTTKPGLGISRMPRIAGGSRVVGIASAVG-----GKSAHSPRSTKKLYVGINEKERKMAKFSAIAMTASADAVRKRGHRFSESLPLPVVVEDAVSGIKKTKDAVNLLKSIGLYEDILRSKEGKHIRAGRGKMRNRRYKVPKSLLIV 201          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_NATPD (50S ribosomal protein L4P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.693e-19
Identity = 66/207 (31.88%), Postives = 96/207 (46.38%), Query Frame = 1
Query:   22 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYS 642
            TV+ L+GD A +    V LP V +   RPD++         N  Q     + AG +T AES G+GR ++ +PR   G      Q         GR   P K  +     IN  +++               V  RGH+ +   ++PLVVSD  E + KT  A+ VL+ +G Y D E+A+D + +R G+G  R R+Y   K  L V S
Sbjct:    4 TVRDLDGDDAGE----VELPAVFETDYRPDLIKRAVLAAQANRIQDTGTDEYAGLRTPAESPGSGRGMAHVPR-QNGRAREVPQAV------SGRPAHPPKAEKDRGLDINTKERKLATRSAIAATANADRVEERGHEFDEETDLPLVVSDEFEDLVKTQEAVDVLEALGVYDDIERAEDGKTVRAGRGTTRGRKYTEPKSVLVVTS 199          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_METJA (50S ribosomal protein L4P OS=Methanocaldococcus jannaschii GN=rpl4p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.510e-17
Identity = 62/209 (29.67%), Postives = 95/209 (45.45%), Query Frame = 1
Query:   55 DASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            +A   + LP V +   RPD++     +      QP      AG +TSA++ G G   +R+ RVP G   R  Q        GGR   P K+ +    ++N  ++             P LV  RGH  ET   +P++V  S E ++KT     V +++G   D  +AK+   IR GKGKMR R+Y  +   + V   +    + A RN+
Sbjct:   11 EAVKEIDLPAVFEEEYRPDLIKRAFLSAFTARLQPKGSDPLAGLRTSAKNIGKGHGRARVDRVPQGWAARVPQAV------GGRRAHPPKVEKILWERVNKKERIKAIKSAIAATANPELVKERGHVFET-ENLPIIVESSFEELQKTKDVFAVFEKLGISDDVIRAKNGIKIRAGKGKMRGRKY-KKPRSILVVVGDKCNAILASRNL 211          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_AERPE (50S ribosomal protein L4P OS=Aeropyrum pernix GN=rpl4p PE=3 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.278e-16
Identity = 64/209 (30.62%), Postives = 97/209 (46.41%), Query Frame = 1
Query:   67 TVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKI--ETVPEMPLVVSDSAECVEKTSA--ALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            +V LP + +  +R D++     +      QP      AG +TSA S G GR V+R+PR+ G     + + A     RGGR   P ++ +     IN  +KR              LV  RGH+   ET+P    +V DS+   + ++A  A  +L+ +G Y D  +AK+ +    GKGKMR RRY   K  L V     + L  A + +
Sbjct:   28 SVVLPQIFRFPVRKDLIRRAFLSEFTARLQPKGRDPMAGKRTSAVSLGVGRGVARVPRIKG-----SLRAALVNMARGGRAAHPPRVEKVLKEYINKKEKRLATISAISATSREDLVRQRGHRFSAETLP----IVLDSSVLAKISTAREARSLLESVGVYEDVLRAKEGKRYNAGKGKMRGRRYKVPKSVLFVLEDPRSPLALAVKGM 227          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_NANEQ (50S ribosomal protein L4P OS=Nanoarchaeum equitans GN=rpl4p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.847e-16
Identity = 72/218 (33.03%), Postives = 97/218 (44.50%), Query Frame = 1
Query:   70 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSA------ESWGT--GRAVSRIPRVPGGGTHRAGQGAFGKCGRG------GRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            + LP      IR D++      I  + RQPY  S  AG Q SA       SW T  GR +SR+ R       R     F    R       G+   P K  + W+ KIN  ++R              LV ARGH I+    +P+VV D  E + KT    ++L ++G   + E+  + +  R GKGK R R YI RKGPL V +    +L KA  NI
Sbjct:   16 IELPPQFNEKIRFDVIKRAFLAIQSHKRQPYGASPIAGKQHSAWTSKRRRSWRTSYGRGISRVSRA----ILRRHGALFYWVARNIAQAVKGKKAHPPKAEKDWYEKINKKERRLAIRSALAATKELDLVKARGHIIDK--PVPIVV-DGLEQLRKTKEIQQLLLKLGLEKELERVYEIKR-RAGKGKRRGRAYIERKGPLIVVNDYNEQLFKAVDNI 225          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_HALMA (50S ribosomal protein L4P OS=Haloarcula marismortui GN=rpl4p PE=1 SV=4)

HSP 1 Score: 82.4185 bits (202), Expect = 2.410e-15
Identity = 63/209 (30.14%), Postives = 98/209 (46.89%), Query Frame = 1
Query:   22 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAE 648
            T+  L+G+  TD    V LPDV +  +R D++G        N +Q Y   + AG +T AES+G+GR  + +P+   G   R  Q         GR   P K  +     +N  +++              LV  RGH+ +   E+P+VVSD  E + KT   + +L+ +  +AD ++A D   I+ G+G  R R+Y      L V S E
Sbjct:    4 TIYDLDGN--TDGE--VDLPDVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPK-QDGRARRVPQAV------KGRSAHPPKTEKDRSLDLNDKERQLAVRSALAATADADLVADRGHEFDR-DEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRA-DETKIKAGQGSARGRKYRRPASILFVTSDE 199          
The following BLAST results are available for this feature:
BLAST of CF417341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RL4_METVS8.553e-2132.1350S ribosomal protein L4P OS=Methanococcus vanniel... [more]
RL4_METTP1.459e-2031.4650S ribosomal protein L4P OS=Methanosaeta thermoph... [more]
RL4_SULTO2.489e-2030.0550S ribosomal protein L4P OS=Sulfolobus tokodaii G... [more]
RL4_THEVO3.593e-1929.6150S ribosomal protein L4P OS=Thermoplasma volcaniu... [more]
RL4_NATPD4.693e-1931.8850S ribosomal protein L4P OS=Natronomonas pharaoni... [more]
RL4_METJA1.510e-1729.6750S ribosomal protein L4P OS=Methanocaldococcus ja... [more]
RL4_AERPE1.278e-1630.6250S ribosomal protein L4P OS=Aeropyrum pernix GN=r... [more]
RL4_NANEQ2.847e-1633.0350S ribosomal protein L4P OS=Nanoarchaeum equitans... [more]
RL4_HALMA2.410e-1530.1450S ribosomal protein L4P OS=Haloarcula marismortu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-271 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417341 ID=CF417341; Name=CF417341; organism=Citrus sinensis; type=EST; length=683bp
GCCGCTGCCCGTCCTCTTGTCACCGTCCAGTCTTTGGAAGGTGACATGGC
CACCGACGCAAGCTCCACCGTCCCCTTGCCCGACGTCATGAAGGCCTCTA
TCCGACCCGACATCGTGGGCTTCGTTCACTCTAACATCTCCAAGAACAGC
CGCCAGCCTTACGCCGTTTCCAAGAAGGCAGGGCACCAGACCTCCGCCGA
ATCATGGGGTACCGGTCGCGCCGTATCCCGTATCCCCCGAGTTCCCGGAG
GCGGTACCCACCGTGCCGGCCAGGGAGCCTTCGGTAAATGTGGTCGCGGT
GGTCGCATGTTCGCTCCCACAAAGATCTGGCGCCGATGGCACCGTAAGAT
CAACGTCAATCAAAAGCGATACGCCATCGTTTCCGCCATTGCCGCCTCCG
CTGTCCCCTCACTTGTGATGGCCCGTGGTCACAAGATCGAGACTGTTCCG
GAAATGCCCCTGGTCGTCAGTGATTCCGCCGAATGTGTTGAGAAAACATC
AGCTGCTCTTAAAGTTCTGAAGCAGATCGGTGCATATGCTGACGCCGAGA
AGGCGAAGGACAGCCAGGGGATTCGCCCTGGAAAGGGTAAAATGAGAAAT
AGGCGTTACATTTCTCGCAAGGGCCCGCTTGNTGTGTACTCAGCCGAGGG
TGCTAAGCTTGTCAAGGCTTTTAGGAACATTCC
back to top