CF417342

Overview
NameCF417342
Unique NameCF417342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_METMA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Methanosarcina mazei GN=gpmI PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.520e-31
Identity = 79/202 (39.11%), Postives = 113/202 (55.94%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            LHL+GL+S GGVHS +  L  L+K A E+G K++ +H+  DGRDV   +++G V    K+L     +    +IA+  GR Y  MDR +  W+  K  +DA  LG AP+K   AV AV +  E+    D+++ P ++ D  G     I D D++V  NFR DR   L  A   +DF+ F R + PK+ Y  M QYD  L LP+
Sbjct:  119 LHLMGLVSYGGVHSHMTHLYALIKLAQEKGLKKVYIHVFLDGRDVPPKAALGDV----KELDAFCKENQSVKIATVQGRYYA-MDR-DKRWERTKLAYDALTLGVAPYKTSDAVTAVSEAYER-GETDEFIKPTIVTDSEGNPEAVIQDTDSIVFLNFRPDRARQLTWAFVKDDFEGFTREKRPKVHYVCMAQYDETLDLPI 313          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_HALOH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=gpmI PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.710e-31
Identity = 85/206 (41.26%), Postives = 127/206 (61.65%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQ--PNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDR-VRFPK-IRYAGMLQYDGELKLPV 606
            LHL+GLLSDGGVHS ++ L  LL+ A  +  +++ +H + DGRD    S+  ++  +E+ LAEL   G+  +IA+  GR Y TMDR +N WD  K+ +DA VLGE       A +A+  L++    + +D+++ P  ++ +NG+ VG I D DAV+ +NFRADR   + KAL  E+FD F+R    P+ + Y  M +YD E  LPV
Sbjct:  112 LHLMGLLSDGGVHSHINHLFGLLEMARVKNIEKVYVHPILDGRDTPPRSAEKYLNQLEEKLAEL---GI-GEIATVSGR-YYTMDR-DNRWDRTKKSYDALVLGEG----LEASDAISALKQSYAADKSDEFVIP-TVIKKNGQPVGTIKDNDAVIFYNFRADRARQITKALALEEFDEFERPAEHPENLYYVCMAEYDEEFNLPV 306          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI1_METAC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 OS=Methanosarcina acetivorans GN=gpmI1 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.997e-30
Identity = 82/202 (40.59%), Postives = 114/202 (56.44%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            LHLIGL+S GGVHS    L  L+K A E+G K++ +H   DGRDV   +++G ++ + +   E  G    A+IA+  GR Y  MDR +  WD  K  +D   LG + +K  +A  AV +   +    D+++ P VI D   K V  I D D+V+ FNFRADR   L  A   +DFD F R + PKI +  M +YD +L LPV
Sbjct:  113 LHLIGLVSCGGVHSYTPHLHALIKLAKEKGLKKVYIHAFLDGRDVPPKTALGDIKKLNEFCKEHGG----AKIATVSGRYYA-MDR-DKRWDRTKLAYDVLTLGASQYKAPNAETAVSEAYGR-GETDEFVKPTVITDHEEKPVATIRDKDSVIFFNFRADRARQLTWAFVKDDFDGFVREKRPKIYFVCMARYDEDLDLPV 307          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI1_METBF (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=gpmI1 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.527e-30
Identity = 77/202 (38.12%), Postives = 113/202 (55.94%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            LHL+GL+S GGVHS +  +  L+K A + G K++ +H   DGRDV   +++  +E ++    E      +A+IA+  GR Y  MDR +  WD  K  +DA  +G AP+K   A  AV +  ++    D+++ P VI D  GK    I D D+++ FNFR DR   L  A   +DF+ F R + PK+ Y  M QYD  L LP+
Sbjct:  116 LHLMGLVSYGGVHSYMAHIHALIKLAQQEGVKKVYIHAFLDGRDVPPKAALKDIEELDAFCKE----NGNAKIATISGRYYA-MDR-DKRWDRTKLAYDALTMGVAPYKTPDAETAVSEAYKR-GETDEFVKPTVITDSEGKPEAVIKDNDSIIFFNFRPDRARQLTWAFVNKDFENFPREKHPKVYYVCMAQYDETLDLPI 310          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_CLOTE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium tetani GN=gpmI PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.899e-29
Identity = 81/195 (41.54%), Postives = 117/195 (60.00%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYD 585
            LHL+GLLSDGGVHS +D L+ +LK A ++G  R+ +H   DGRDV   S+  ++  IE  + EL       QIA+  GR Y  MDR +  W+ V+  ++A V G       SAVEA++K   + N  D+++ P VI+ ++GK  G I D D+++ FNFR DR   + +AL  +DFD F+R R  K+ +  M QYD
Sbjct:  111 LHLLGLLSDGGVHSHIDHLKAILKLAKDKGLNRVYVHAFLDGRDVPPSSAKEYIINIENYMKELS----VGQIATLAGR-YYAMDR-DKRWERVELAYNALVYGTG-ELSNSAVEAIEK-SYKDNTTDEFVLPTVIL-KDGKPTGTIKDEDSIIFFNFRPDRARQITRALNDKDFDGFERKRL-KLNFITMTQYD 295          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_LISIN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Listeria innocua GN=gpmI PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.608e-28
Identity = 79/204 (38.73%), Postives = 119/204 (58.33%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDR-VRFPK-IRYAGMLQYDGELKLPV 606
            LHL GLLSDGGVHS ++ L  LL+ A ++G K + +H   DGRDV   SS+ ++ET+EK +++L        IA+  GR Y  MDR +  W+ V++ + A V  E   KF+  +E VK      + ND+++ P  I+ ++GK V  + D DAV+ FNFR DR + L+ A   +++D FDR    PK I++  M  Y+  +   V
Sbjct:  111 LHLFGLLSDGGVHSHINHLVALLETAKDKGVKNVYIHAFLDGRDVAPQSSLEYLETLEKAISDLN----YGAIATVSGRFY-AMDR-DKRWERVEKAYKAIVSAEG-EKFEDPIELVKASYAN-DKNDEFVVP-AIITKDGKPVATVKDNDAVIFFNFRPDRAIQLSNAFTDKEWDHFDRGANHPKNIKFVTMTLYNPSIDAEV 305          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI2_METAC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 OS=Methanosarcina acetivorans GN=gpmI2 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.608e-28
Identity = 75/202 (37.13%), Postives = 110/202 (54.46%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            LHL+GL+S GGVHS +  L  L+K A ++G K++ +H   DGRDV   +++  +  ++    E       A+IA+  GR Y  MDR +  W+  K  +DA  LG AP+    A  AV     +    D+++ P V+   +GK    + D D+++ FNFR DR   L  A E +DFD F R + PK+ Y  M QYD  L LP+
Sbjct:  119 LHLMGLVSYGGVHSYMTHLYALIKLARDKGLKKVYIHAFLDGRDVPPKAALADIRELDAFCKE----NGSARIATVQGRYYA-MDR-DKRWERSKLAYDALTLGVAPYTTSDAETAVSDAYAR-GETDEFVKPTVVTGSDGKPEAVVQDNDSIIFFNFRPDRARQLTWAFENDDFDGFPREKRPKVHYVCMAQYDETLDLPI 313          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_CLOPS (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium perfringens (strain SM101 / Type A) GN=gpmI PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.742e-28
Identity = 79/199 (39.70%), Postives = 121/199 (60.80%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELK 597
            LHL+GLLS+GGVHS +D L+ LL+ A ++G +++ +H   DGRDV   S   F+  +E  + E+   GV  +IA+  GR Y  MDR +N W+ V+  ++A VLGE   K  SAVEA++K     N  D+++ P  +++E+G  V  I DGD+V+ FNFR DR   + +A+   +F  F+R +   + +  M QYD  L+
Sbjct:  111 LHLMGLLSNGGVHSHIDHLKGLLELAKKKGLQKVYVHAFMDGRDVAPSSGKEFIVELENAMKEI---GV-GEIATISGR-YYAMDR-DNRWERVELAYNAMVLGEG-EKASSAVEAIEK-SYHDNKTDEFVLP-TVIEEDGHPVSRIKDGDSVIFFNFRPDRAREITRAIVDPEFKGFERKQL-HVNFVCMTQYDKTLE 299          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_CLOP1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=gpmI PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.742e-28
Identity = 79/199 (39.70%), Postives = 121/199 (60.80%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELK 597
            LHL+GLLS+GGVHS +D L+ LL+ A ++G +++ +H   DGRDV   S   F+  +E  + E+   GV  +IA+  GR Y  MDR +N W+ V+  ++A VLGE   K  SAVEA++K     N  D+++ P  +++E+G  V  I DGD+V+ FNFR DR   + +A+   +F  F+R +   + +  M QYD  L+
Sbjct:  111 LHLMGLLSNGGVHSHIDHLKGLLELAKKKGLQKVYVHAFMDGRDVAPSSGKEFIVELENAMKEI---GV-GEIATISGR-YYAMDR-DNRWERVELAYNAMVLGEG-EKASSAVEAIEK-SYHDNKTDEFVLP-TVIEEDGHPVARIKDGDSVIFFNFRPDRAREITRAIVDPEFKGFERKQL-HVNFVCMTQYDKTLE 299          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_AKKM8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=gpmI PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.742e-28
Identity = 78/203 (38.42%), Postives = 111/203 (54.68%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPVI 609
            LHL+GL+SDGGVHS ++ L  ++K A E G + I +H +TDGRD    S VGF+  +E+ +     +   A+IA+  GR Y  MDR +  WD  K  WDA VLG       S  E V++   +    D++L P +    N + V    D D V  FNFRADR   ++ A  Y +FD FDR   PK+ Y  + +YD +   P++
Sbjct:  116 LHLLGLVSDGGVHSHINHLIGIVKYAYEAGVRDICIHAITDGRDCSPTSGVGFIRQLEEAV-----RPYGAKIATVVGRFY-AMDR-DKRWDRNKLAWDAIVLGRGEQCSCSPAEYVEQCYAK-GETDEFLKPGIFAYGNEQRVR---DNDVVFFFNFRADRARQMSDAFLYPEFDGFDREVTPKVHYVTLTEYDAKYPSPIV 307          
The following BLAST results are available for this feature:
BLAST of CF417342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_METMA4.520e-3139.112,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HALOH7.710e-3141.262,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI1_METAC4.997e-3040.592,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI1_METBF6.527e-3038.122,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOTE1.899e-2941.542,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LISIN1.608e-2838.732,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI2_METAC1.608e-2837.132,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOPS2.742e-2839.702,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOP12.742e-2839.702,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_AKKM82.742e-2838.422,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-272 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417342 ID=CF417342; Name=CF417342; organism=Citrus sinensis; type=EST; length=625bp
TTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTAGGCTTGA
TCAACTTCAGTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAA
TTCGTCTTCATATTCTTACTGACGGGCGTGATGTTTTGGATGGTTCAAGC
GTAGGATTCGTAGAAACTATTGAGAAAGATCTTGCAGAATTGCGTGGGAA
AGGTGTTGACGCACAGATTGCATCTGGAGGAGGCCGCATGTACGTCACGA
TGGACCGTTATGAGAATGATTGGGATGTTGTCAAACGAGGATGGGATGCC
CAAGTTCTTGGAGAAGCTCCACACAAGTTTAAGAGCGCCGTTGAAGCTGT
CAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCAT
TTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGTAGATGGT
GATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTATGCTTGC
TAAGGCCCTTGAATATGAAGATTTTGACNAATTTGATCGAGTTCGGTTCC
CTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTTGAAACTT
CCCGTCATTACCTTGTGTCTCCTCC
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