CF417342

Overview
NameCF417342
Unique NameCF417342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_ECOHS (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli O9:H4 (strain HS) GN=gpmI PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 71/202 (35.15%), Postives = 114/202 (56.44%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GLLS GGVHS  D +  +++ A+ERGA++I LH   DGRD    S+   ++  E+  A L GKG   ++AS  GR Y  MDR +N WD V++ +D   L +   +  +AV  ++    + + ND+++   VI  E G+    + DGDA++  NFRADR   + +A    DFD F R +   + +  + +Y  ++K  V
Sbjct:  113 VHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPRSAESSLKKFEEKFAAL-GKG---RVASIIGR-YYAMDR-DNRWDRVEKAYDLLTLAQGEFQADTAVAGLQAAYAR-DENDEFVKATVIRAE-GQPDAAMEDGDALIFMNFRADRAREITRAFVNADFDGFARKKVVNVDFVMLTEYAADIKTAV 306          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_ECO57 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli O157:H7 GN=gpmI PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 71/202 (35.15%), Postives = 114/202 (56.44%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GLLS GGVHS  D +  +++ A+ERGA++I LH   DGRD    S+   ++  E+  A L GKG   ++AS  GR Y  MDR +N WD V++ +D   L +   +  +AV  ++    + + ND+++   VI  E G+    + DGDA++  NFRADR   + +A    DFD F R +   + +  + +Y  ++K  V
Sbjct:  113 VHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPRSAESSLKKFEEKFAAL-GKG---RVASIIGR-YYAMDR-DNRWDRVEKAYDLLTLAQGEFQADTAVAGLQAAYAR-DENDEFVKATVIRAE-GQPDAAMEDGDALIFMNFRADRAREITRAFVNADFDGFARKKVVNVDFVMLTEYAADIKTAV 306          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_ECO24 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=gpmI PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 71/202 (35.15%), Postives = 114/202 (56.44%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GLLS GGVHS  D +  +++ A+ERGA++I LH   DGRD    S+   ++  E+  A L GKG   ++AS  GR Y  MDR +N WD V++ +D   L +   +  +AV  ++    + + ND+++   VI  E G+    + DGDA++  NFRADR   + +A    DFD F R +   + +  + +Y  ++K  V
Sbjct:  113 VHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPRSAESSLKKFEEKFAAL-GKG---RVASIIGR-YYAMDR-DNRWDRVEKAYDLLTLAQGEFQADTAVAGLQAAYAR-DENDEFVKATVIRAE-GQPDAAMEDGDALIFMNFRADRAREITRAFVNADFDGFARKKVVNVDFVMLTEYAADIKTAV 306          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_CYAP8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Cyanothece sp. (strain PCC 8801) GN=gpmI PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 73/202 (36.14%), Postives = 106/202 (52.48%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            LHLIGL SDGGVHS LD L  LL+ A E+   ++ +H++TDGRD      +  V  +E  + E+   GV  +I +  GR Y  MDR +  WD +++ +D     + P   +SA E +K   +  +  D+++ P  I      A G I  GD V+ FNFR DR   L  AL   +FD F+R     + +    QYD +L + V
Sbjct:  114 LHLIGLCSDGGVHSHLDHLIGLLELAKEQHLDQVCIHVITDGRDTNTNEGINAVAKLESSIKEI---GV-GRIVTVSGR-YYAMDR-DRRWDRIQKAYDVYT-QDRPGDGRSATEVIKDFYKN-SITDEFIEPTRI------APGAIKSGDGVIFFNFRPDRARQLCYALTMPNFDGFERELIQPLSFVTFTQYDPKLPVKV 301          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_VIBVY (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio vulnificus (strain YJ016) GN=gpmI PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.469e-23
Identity = 71/202 (35.15%), Postives = 112/202 (55.45%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GL+S GGVHS  D +   ++ A+ERGA++I LH   DGRD    S+ G ++  +   A+L GKG   ++AS  GR Y  MDR +N+WD V+  +D     +A   + SAV  +    E+   ND+++    I  E G+    + DGDAV+  N+RADR   + +     DF  F+R  FP + +  + QY  ++ L +
Sbjct:  112 VHIMGLMSPGGVHSHEDHILAAVEMAAERGAEKIYLHCFLDGRDTPPRSAEGSLQRFQDLFAKL-GKG---RVASLVGR-YYAMDR-DNNWDRVQVAYDLLTQAKADFTYDSAVAGLAAAYER-GENDEFVKATEIKAE-GQESAAMQDGDAVIFMNYRADRARQITRTF-VADFAGFERAAFPAVNFVMLTQYAADIPLAI 304          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_PSEU2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=gpmI PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.469e-23
Identity = 78/201 (38.81%), Postives = 106/201 (52.74%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLP 603
            +H++GLLSDGGVHS  D L  + + A +RGA++I LH   DGRD    S+   +E ++   A L GKG  A I    GR Y  MDR +N WD V   ++  V   A     SAV  ++    + + ND+    FV     G+A   + DGDAVV  NFRADR   L +    +DF  F+R R PK+ Y  + QY   +  P
Sbjct:  113 VHIMGLLSDGGVHSHQDHLVAMAELAVKRGAEKIYLHAFLDGRDTPPRSAKKSLELMDATFARL-GKGRTATIV---GR-YFAMDR-DNRWDRVSSAYNLIVDSTADFHADSAVAGLEAAYAR-DENDE----FVKATRIGEA-ARVEDGDAVVFMNFRADRARELTRVFVEDDFKDFERARQPKVNYVMLTQYAASIPAP 301          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_CHLAD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=gpmI PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.469e-23
Identity = 74/184 (40.22%), Postives = 107/184 (58.15%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQV--LGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVR 546
            LHL+GL   GGVH+  D L  LL+ A  +  +R+ LH+  DGRDVL  S++GF++T+E  +A L G GV   IA+  GR Y  MDR +  W+   R + A V  +GE     ++A+EA        + +D+++ P VIVD +G  V  + DGDAV+  NFR DR   L +A  + D D  +R+R
Sbjct:  112 LHLMGLFGPGGVHAHEDHLHALLELAHRQQVRRVYLHLFLDGRDVLPRSALGFLDTLEGVIARL-GVGV---IATVSGR-YYAMDR-DKRWERTGRAYAALVDGIGERATSARAAIEAA----YANDISDEFVLPTVIVDAHGTPVATVRDGDAVIFTNFRPDRGRQLTRA--FVDPDLNERIR 283          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_FRATW (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=gpmI PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.530e-23
Identity = 72/202 (35.64%), Postives = 112/202 (55.45%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            LHLIGLLS GGVHS  + +  ++K A ++G KR+ LH   DGRD    S+   ++  +K L +L        IAS  GR Y  MDR +N WD V++ ++A V   A   + SA+EA+++   +  +++  +P    + ++G  V  + D D+V+  NFRADR   ++ A   E FD F R +   I +  + +YD +LK  V
Sbjct:  110 LHLIGLLSPGGVHSHEEHIFEMIKIAKQKGIKRLYLHAFLDGRDTPPRSAEKSIKKADKLLQDLN----LGYIASVCGR-YYAMDR-DNRWDRVEKAYNAIVNANADFIYDSALEALEQSYARDQSDEFVIP--TCIKKDGHLV-KVQDNDSVIFMNFRADRAREISHAFTDESFDHFPRKKHLNINFTTLTEYDSKLKCAV 302          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_FRATT (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Francisella tularensis subsp. tularensis GN=gpmI PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.530e-23
Identity = 72/202 (35.64%), Postives = 112/202 (55.45%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            LHLIGLLS GGVHS  + +  ++K A ++G KR+ LH   DGRD    S+   ++  +K L +L        IAS  GR Y  MDR +N WD V++ ++A V   A   + SA+EA+++   +  +++  +P    + ++G  V  + D D+V+  NFRADR   ++ A   E FD F R +   I +  + +YD +LK  V
Sbjct:  110 LHLIGLLSPGGVHSHEEHIFEMIKIAKQKGIKRLYLHAFLDGRDTPPRSAEKSIKKADKLLQDLN----LGYIASVCGR-YYAMDR-DNRWDRVEKAYNAIVNANADFIYDSALEALEQSYARDQSDEFVIP--TCIKKDGHLV-KVQDNDSVIFMNFRADRAREISHAFTDESFDHFPRKKHLNINFTTLTEYDSKLKCAV 302          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_FRATO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=gpmI PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.530e-23
Identity = 72/202 (35.64%), Postives = 112/202 (55.45%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            LHLIGLLS GGVHS  + +  ++K A ++G KR+ LH   DGRD    S+   ++  +K L +L        IAS  GR Y  MDR +N WD V++ ++A V   A   + SA+EA+++   +  +++  +P    + ++G  V  + D D+V+  NFRADR   ++ A   E FD F R +   I +  + +YD +LK  V
Sbjct:  114 LHLIGLLSPGGVHSHEEHIFEMIKIAKQKGIKRLYLHAFLDGRDTPPRSAEKSIKKADKLLQDLN----LGYIASVCGR-YYAMDR-DNRWDRVEKAYNAIVNANADFIYDSALEALEQSYARDQSDEFVIP--TCIKKDGHLV-KVQDNDSVIFMNFRADRAREISHAFTDESFDHFPRKKHLNINFTTLTEYDSKLKCAV 306          
The following BLAST results are available for this feature:
BLAST of CF417342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_ECOHS2.656e-2335.152,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ECO572.656e-2335.152,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ECO242.656e-2335.152,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CYAP82.656e-2336.142,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBVY3.469e-2335.152,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEU23.469e-2338.812,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CHLAD3.469e-2340.222,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FRATW4.530e-2335.642,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FRATT4.530e-2335.642,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FRATO4.530e-2335.642,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-272 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417342 ID=CF417342; Name=CF417342; organism=Citrus sinensis; type=EST; length=625bp
TTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTAGGCTTGA
TCAACTTCAGTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAA
TTCGTCTTCATATTCTTACTGACGGGCGTGATGTTTTGGATGGTTCAAGC
GTAGGATTCGTAGAAACTATTGAGAAAGATCTTGCAGAATTGCGTGGGAA
AGGTGTTGACGCACAGATTGCATCTGGAGGAGGCCGCATGTACGTCACGA
TGGACCGTTATGAGAATGATTGGGATGTTGTCAAACGAGGATGGGATGCC
CAAGTTCTTGGAGAAGCTCCACACAAGTTTAAGAGCGCCGTTGAAGCTGT
CAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCAT
TTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGTAGATGGT
GATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTATGCTTGC
TAAGGCCCTTGAATATGAAGATTTTGACNAATTTGATCGAGTTCGGTTCC
CTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTTGAAACTT
CCCGTCATTACCTTGTGTCTCCTCC
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